Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig1-122O09.5
        

               Conread position:
               1-403
               

               Cow position:
               chr1:67285968-67286338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-441
               

               Cow position:
               chr1:18244925-18244502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               377, 94
               

               Conread position:
               1-441
               

               Cow position:
               chr1:55324065-55323636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               1-442
               

               Cow position:
               chr1:40514031-40513611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               2-164
               

               Cow position:
               chr1:62854347-62854189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               2-378
               

               Cow position:
               chr1:11863815-11863439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 83
               

               Conread position:
               2-402
               

               Cow position:
               chr1:82919177-82918811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               273
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               2-432
               

               Cow position:
               chr1:101149316-101149727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               389, 82
               

               Conread position:
               8-441
               

               Cow position:
               chr1:57567418-57567836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 100
               

               Conread position:
               8-441
               

               Cow position:
               chr1:85881220-85881628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               11-396
               

               Cow position:
               chr1:79637470-79637094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               301, 35
               

               Conread position:
               11-441
               

               Cow position:
               chr1:93853993-93854406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               263, 73
               

               Conread position:
               11-441
               

               Cow position:
               chr1:97227236-97226816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               248, 73
               

               Conread position:
               14-441
               

               Cow position:
               chr1:67902962-67902536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               284
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               150, 84
               

               Conread position:
               15-312
               

               Cow position:
               chr1:37455191-37455470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               114, 69
               

               Conread position:
               15-329
               

               Cow position:
               chr1:94659353-94659651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               15-342
               

               Cow position:
               chr1:72079958-72080265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               230
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-393
               

               Cow position:
               chr1:57656002-57656396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 318
               

               Conread position:
               15-393
               

               Cow position:
               chr1:58223744-58224133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               272
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               69, 293
               

               Conread position:
               15-402
               

               Cow position:
               chr1:79336318-79335956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 55
               

               Conread position:
               15-433
               

               Cow position:
               chr1:52173028-52172592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 336
               

               Conread position:
               15-433
               

               Cow position:
               chr1:56194455-56194053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-439
               

               Cow position:
               chr1:67835681-67835254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               284
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               78, 163
               

               Conread position:
               15-441
               

               Cow position:
               chr1:3386530-3386121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr1:8824542-8824945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr1:17942349-17941925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               285, 38
               

               Conread position:
               15-441
               

               Cow position:
               chr1:25549540-25549949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr1:33550398-33550808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 70
               

               Conread position:
               15-441
               

               Cow position:
               chr1:34688829-34689225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               286
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr1:42735933-42736343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 69
               

               Conread position:
               15-441
               

               Cow position:
               chr1:55775634-55776040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr1:57367656-57367246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               325, 69
               

               Conread position:
               15-441
               

               Cow position:
               chr1:58335312-58335722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               263, 69
               

               Conread position:
               15-441
               

               Cow position:
               chr1:62245174-62244762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               284, 69
               

               Conread position:
               15-441
               

               Cow position:
               chr1:62806327-62805920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr1:63606307-63605896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               397, 71
               

               Conread position:
               15-441
               

               Cow position:
               chr1:72980758-72981153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr1:76753173-76752767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr1:86699744-86699332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 69
               

               Conread position:
               15-441
               

               Cow position:
               chr1:88130237-88130644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr1:91898452-91898884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 183
               

               Conread position:
               15-441
               

               Cow position:
               chr1:100597906-100597496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               382, 69
               

               Conread position:
               15-441
               

               Cow position:
               chr1:102435552-102435141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               366, 69
               

               Conread position:
               15-447
               

               Cow position:
               chr1:49974711-49974299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               326, 53
               

               Conread position:
               17-441
               

               Cow position:
               chr1:87244286-87244679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               18-327
               

               Cow position:
               chr1:56722578-56722904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               228
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               18-388
               

               Cow position:
               chr1:13449637-13450024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               18-394
               

               Cow position:
               chr1:8027696-8027303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 390
               

               Conread position:
               18-441
               

               Cow position:
               chr1:11292658-11292218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               18-441
               

               Cow position:
               chr1:17013282-17012850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               18-441
               

               Cow position:
               chr1:17037106-17036672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               295
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               80, 284
               

               Conread position:
               18-441
               

               Cow position:
               chr1:21086855-21087299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               299
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               77, 155
               

               Conread position:
               18-441
               

               Cow position:
               chr1:22000473-22000070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               364, 66
               

               Conread position:
               18-441
               

               Cow position:
               chr1:25180552-25180145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               18-441
               

               Cow position:
               chr1:39543217-39543657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               18-441
               

               Cow position:
               chr1:61308457-61308888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 133
               

               Conread position:
               18-441
               

               Cow position:
               chr1:71563121-71562692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 266
               

               Conread position:
               18-441
               

               Cow position:
               chr1:80359719-80359283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 295
               

               Conread position:
               18-441
               

               Cow position:
               chr1:85791146-85791575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 154
               

               Conread position:
               18-451
               

               Cow position:
               chr1:86548676-86548238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               303
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               66, 292
               

               Conread position:
               19-395
               

               Cow position:
               chr1:37420494-37420134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 16
               

               Conread position:
               19-432
               

               Cow position:
               chr1:18880937-18880501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               289
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               68, 161
               

               Conread position:
               19-436
               

               Cow position:
               chr1:72119640-72120033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               282
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               149, 63
               

               Conread position:
               19-441
               

               Cow position:
               chr1:20828358-20828775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               278
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               103, 65
               

               Conread position:
               19-441
               

               Cow position:
               chr1:30023743-30023305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 168
               

               Conread position:
               19-441
               

               Cow position:
               chr1:31395878-31396299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 280
               

               Conread position:
               19-441
               

               Cow position:
               chr1:43019576-43020011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 281
               

               Conread position:
               19-441
               

               Cow position:
               chr1:55277032-55276600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 288
               

               Conread position:
               19-441
               

               Cow position:
               chr1:62925079-62925499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 65
               

               Conread position:
               19-441
               

               Cow position:
               chr1:69402473-69402878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 65
               

               Conread position:
               19-441
               

               Cow position:
               chr1:69922983-69922577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 65
               

               Conread position:
               19-441
               

               Cow position:
               chr1:79921280-79920841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               19-441
               

               Cow position:
               chr1:82563962-82564390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 145
               

               Conread position:
               19-441
               

               Cow position:
               chr1:89425038-89425473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 424
               

               Conread position:
               20-441
               

               Cow position:
               chr1:59210686-59210251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 424
               

               Conread position:
               24-441
               

               Cow position:
               chr1:40685233-40684804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               289
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               64, 308
               

               Conread position:
               28-395
               

               Cow position:
               chr1:73071528-73071178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               35-272
               

               Cow position:
               chr1:40907616-40907845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               38-441
               

               Cow position:
               chr1:31366595-31366191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               301, 0
               

               Conread position:
               40-435
               

               Cow position:
               chr1:89740728-89740365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               363, 58
               

               Conread position:
               79-315
               

               Cow position:
               chr1:3934637-3934393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               88-440
               

               Cow position:
               chr1:82652177-82652522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 0
               

               Conread position:
               88-441
               

               Cow position:
               chr1:56162864-56163212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               233
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               201, 0
               

               Conread position:
               89-441
               

               Cow position:
               chr1:28872611-28872963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               97-326
               

               Cow position:
               chr1:9382702-9382475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               46, 113
               

               Conread position:
               97-440
               

               Cow position:
               chr1:77163323-77163664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               216, 168
               

               Conread position:
               98-367
               

               Cow position:
               chr1:30284049-30283791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               45, 21
               

               Conread position:
               98-368
               

               Cow position:
               chr1:97560262-97560530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               98-396
               

               Cow position:
               chr1:99995550-99995252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               210
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               120, 111
               

               Conread position:
               98-429
               

               Cow position:
               chr1:88759109-88759441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               98-441
               

               Cow position:
               chr1:6708547-6708208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               229
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               98-441
               

               Cow position:
               chr1:8553871-8554214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               232
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               74, 66
               

               Conread position:
               98-441
               

               Cow position:
               chr1:33850803-33851165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               243
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               115, 39
               

               Conread position:
               98-441
               

               Cow position:
               chr1:53198335-53198679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               196, 0
               

               Conread position:
               98-441
               

               Cow position:
               chr1:56489390-56489725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               229
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               192, 0
               

               Conread position:
               98-441
               

               Cow position:
               chr1:87449496-87449839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 73
               

               Conread position:
               98-441
               

               Cow position:
               chr1:91719095-91718748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               99-441
               

               Cow position:
               chr1:40052903-40053241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               232
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               100-447
               

               Cow position:
               chr1:18014647-18014298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               224
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               11, 293
               

               Conread position:
               102-438
               

               Cow position:
               chr1:29950751-29950424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               224
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               18, 39
               

               Conread position:
               103-441
               

               Cow position:
               chr1:1461778-1461441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 58
               

               Conread position:
               103-441
               

               Cow position:
               chr1:76545991-76545657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               103-441
               

               Cow position:
               chr1:76623397-76623062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               291, 0
               

               Conread position:
               104-324
               

               Cow position:
               chr1:102548753-102548973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               11, 7
               

               Conread position:
               104-441
               

               Cow position:
               chr1:5501527-5501861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               104-441
               

               Cow position:
               chr1:13253882-13253552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               267, 0
               

               Conread position:
               104-441
               

               Cow position:
               chr1:72187323-72186987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 285
               

               Conread position:
               107-441
               

               Cow position:
               chr1:79457415-79457081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               107-441
               

               Cow position:
               chr1:85781228-85780892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               193, 0
               

               Conread position:
               113-436
               

               Cow position:
               chr1:59933102-59933434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               224
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               10, 29
               

               Conread position:
               118-435
               

               Cow position:
               chr1:20988332-20988640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               212
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               243, 173
               

               Conread position:
               118-441
               

               Cow position:
               chr1:13645286-13645617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               22, 62
               

               Conread position:
               119-432
               

               Cow position:
               chr1:76703803-76703484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               229
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               24, 30
               

               Conread position:
               119-441
               

               Cow position:
               chr1:38414384-38414688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               122-397
               

               Cow position:
               chr1:30058119-30058391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               31, 104
               

               Conread position:
               122-401
               

               Cow position:
               chr1:58180185-58179920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               189
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               88, 42
               

               Conread position:
               122-402
               

               Cow position:
               chr1:63501027-63501308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               37, 195
               

               Conread position:
               122-430
               

               Cow position:
               chr1:32342474-32342168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               200
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               150, 77
               

               Conread position:
               125-400
               

               Cow position:
               chr1:42176809-42176551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               190
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               75, 61
               

               Conread position:
               125-404
               

               Cow position:
               chr1:86608774-86609050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               190
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               69, 184
               

               Conread position:
               128-400
               

               Cow position:
               chr1:98661716-98661446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               75, 37
               

               Conread position:
               128-441
               

               Cow position:
               chr1:30027951-30027657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               218
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               131-402
               

               Cow position:
               chr1:42289977-42290240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               24, 122
               

               Conread position:
               131-441
               

               Cow position:
               chr1:18406621-18406304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               181, 41
               

               Conread position:
               131-441
               

               Cow position:
               chr1:40953284-40953596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               27, 226
               

               Conread position:
               131-441
               

               Cow position:
               chr1:89810053-89809735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               223
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               38, 282
               

               Conread position:
               142-434
               

               Cow position:
               chr1:102555683-102555965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               142-441
               

               Cow position:
               chr1:68607961-68607662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               151-435
               

               Cow position:
               chr1:8330420-8330143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               191
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               145, 0
               

               Conread position:
               159-441
               

               Cow position:
               chr1:89771072-89770797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               206
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               153, 44
               

               Conread position:
               161-433
               

               Cow position:
               chr1:5318374-5318638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               162-441
               

               Cow position:
               chr1:88634988-88635257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               171-441
               

               Cow position:
               chr1:69766088-69766350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               172-434
               

               Cow position:
               chr1:69536519-69536783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               200
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               15, 226
               

               Conread position:
               176-432
               

               Cow position:
               chr1:62854206-62853950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 219
               

               Conread position:
               176-436
               

               Cow position:
               chr1:72656604-72656862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               189
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               176-439
               

               Cow position:
               chr1:33711682-33711947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 5
               

               Conread position:
               176-441
               

               Cow position:
               chr1:28801805-28801538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               243, 0
               

               Conread position:
               188-432
               

               Cow position:
               chr1:25887498-25887264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               153, 46
               

               Conread position:
               188-441
               

               Cow position:
               chr1:89900068-89899816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 0
               

               Conread position:
               188-441
               

               Cow position:
               chr1:97123466-97123718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 0
               

               Conread position:
               188-441
               

               Cow position:
               chr1:101858347-101858098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               192
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               206, 169
               

               Conread position:
               189-448
               

               Cow position:
               chr1:52918973-52918726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               239, 102
               

               Conread position:
               193-436
               

               Cow position:
               chr1:52233460-52233230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               193-441
               

               Cow position:
               chr1:59674127-59674375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               120, 114
               

               Conread position:
               194-441
               

               Cow position:
               chr1:28722431-28722678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               203-441
               

               Cow position:
               chr1:87207775-87207531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               186
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               79, 212
               

               Conread position:
               206-441
               

               Cow position:
               chr1:54366161-54365935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               21, 80
               

               Conread position:
               214-441
               

               Cow position:
               chr1:33895337-33895565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               233-441
               

               Cow position:
               chr1:56144652-56144445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               189, 0
               

               Conread position:
               255-441
               

               Cow position:
               chr1:40307771-40307950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               262-441
               

               Cow position:
               chr1:29361715-29361894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               127
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               268-441
               

               Cow position:
               chr1:99349307-99349132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               1-347
               

               Cow position:
               chr10:54126949-54127275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               1-441
               

               Cow position:
               chr10:25497850-25498261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 95
               

               Conread position:
               2-441
               

               Cow position:
               chr10:29695732-29696151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               306
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               76, 130
               

               Conread position:
               2-441
               

               Cow position:
               chr10:62216103-62216516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               11-441
               

               Cow position:
               chr10:8289465-8289893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 73
               

               Conread position:
               15-276
               

               Cow position:
               chr10:37040590-37040832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-401
               

               Cow position:
               chr10:46190877-46191244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               262
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               149, 80
               

               Conread position:
               15-402
               

               Cow position:
               chr10:61296797-61297201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 232
               

               Conread position:
               15-429
               

               Cow position:
               chr10:38345873-38345465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               397, 64
               

               Conread position:
               15-435
               

               Cow position:
               chr10:281153-280716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 401
               

               Conread position:
               15-441
               

               Cow position:
               chr10:7283179-7282773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr10:10581156-10581583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 104
               

               Conread position:
               15-441
               

               Cow position:
               chr10:19511114-19511515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr10:21486419-21486826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr10:24299353-24298942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               283
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               179, 80
               

               Conread position:
               15-441
               

               Cow position:
               chr10:29847117-29846700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 58
               

               Conread position:
               15-441
               

               Cow position:
               chr10:32650241-32650642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr10:37060430-37060839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr10:37769326-37769732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr10:38538990-38538588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr10:57990462-57990054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr10:60489158-60489572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 83
               

               Conread position:
               18-303
               

               Cow position:
               chr10:19497443-19497140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               202
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               18-401
               

               Cow position:
               chr10:4192743-4192342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               18-401
               

               Cow position:
               chr10:4499215-4499578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               253
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               18-441
               

               Cow position:
               chr10:14803308-14803744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 292
               

               Conread position:
               18-441
               

               Cow position:
               chr10:19839645-19840062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               276
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               104, 66
               

               Conread position:
               18-441
               

               Cow position:
               chr10:21741279-21740842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 218
               

               Conread position:
               18-441
               

               Cow position:
               chr10:39179263-39179693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               294
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               70, 289
               

               Conread position:
               18-441
               

               Cow position:
               chr10:39817873-39817440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 156
               

               Conread position:
               18-441
               

               Cow position:
               chr10:41876393-41876828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 227
               

               Conread position:
               18-441
               

               Cow position:
               chr10:47906252-47906687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 250
               

               Conread position:
               19-388
               

               Cow position:
               chr10:21466726-21467112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               260
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               19-433
               

               Cow position:
               chr10:19143835-19143436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               412, 65
               

               Conread position:
               19-441
               

               Cow position:
               chr10:22100747-22101151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               19-441
               

               Cow position:
               chr10:32577772-32578213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               19-441
               

               Cow position:
               chr10:41156927-41157357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 317
               

               Conread position:
               19-441
               

               Cow position:
               chr10:51953131-51952696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 162
               

               Conread position:
               19-441
               

               Cow position:
               chr10:62409347-62408942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               20-441
               

               Cow position:
               chr10:21401193-21400762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 152
               

               Conread position:
               22-441
               

               Cow position:
               chr10:11686181-11685758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               287
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               71, 306
               

               Conread position:
               22-446
               

               Cow position:
               chr10:39041798-39041390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               38-400
               

               Cow position:
               chr10:38546698-38546354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               84-441
               

               Cow position:
               chr10:41566665-41567016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               245
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               236, 73
               

               Conread position:
               88-441
               

               Cow position:
               chr10:55092671-55093020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               240
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               100, 71
               

               Conread position:
               93-305
               

               Cow position:
               chr10:42736072-42736281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               153
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               9, 81
               

               Conread position:
               98-317
               

               Cow position:
               chr10:28641056-28641276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               98-441
               

               Cow position:
               chr10:57559980-57559639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               300, 221
               

               Conread position:
               104-389
               

               Cow position:
               chr10:19715471-19715188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               107-441
               

               Cow position:
               chr10:123894-124219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               194, 214
               

               Conread position:
               107-441
               

               Cow position:
               chr10:1375113-1375446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               107-456
               

               Cow position:
               chr10:42109310-42109657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               276, 109
               

               Conread position:
               107-456
               

               Cow position:
               chr10:42747679-42748026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               219
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               275, 177
               

               Conread position:
               110-441
               

               Cow position:
               chr10:14859567-14859887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               122-401
               

               Cow position:
               chr10:34318662-34318393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               187
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               122-402
               

               Cow position:
               chr10:28116843-28116553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               40, 32
               

               Conread position:
               128-341
               

               Cow position:
               chr10:183141-183353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               103, 95
               

               Conread position:
               129-400
               

               Cow position:
               chr10:38846978-38847242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               161, 28
               

               Conread position:
               139-400
               

               Cow position:
               chr10:58377952-58377703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               141-441
               

               Cow position:
               chr10:54059736-54059445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               209
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               67, 35
               

               Conread position:
               142-313
               

               Cow position:
               chr10:2123500-2123329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               144-441
               

               Cow position:
               chr10:29633245-29632951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               9, 15
               

               Conread position:
               151-435
               

               Cow position:
               chr10:32063770-32064056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               22, 11
               

               Conread position:
               162-399
               

               Cow position:
               chr10:31523488-31523707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               165-411
               

               Cow position:
               chr10:15862656-15862417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               166, 50
               

               Conread position:
               168-434
               

               Cow position:
               chr10:62777978-62778248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               168-441
               

               Cow position:
               chr10:34685532-34685805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 143
               

               Conread position:
               170-441
               

               Cow position:
               chr10:25565600-25565336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               176-332
               

               Cow position:
               chr10:1938196-1938037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               120
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               176-441
               

               Cow position:
               chr10:276238-276503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 141
               

               Conread position:
               181-400
               

               Cow position:
               chr10:58596156-58596373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               13, 62
               

               Conread position:
               188-436
               

               Cow position:
               chr10:10478473-10478239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               189-441
               

               Cow position:
               chr10:25359060-25359309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               186
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               189-441
               

               Cow position:
               chr10:49310198-49310446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               76, 36
               

               Conread position:
               203-447
               

               Cow position:
               chr10:42628347-42628576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               267-434
               

               Cow position:
               chr10:50018322-50018156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               129
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               40, 120
               

               Conread position:
               1-430
               

               Cow position:
               chr11:12092880-12093303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               399, 94
               

               Conread position:
               2-173
               

               Cow position:
               chr11:12352161-12351995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               2-252
               

               Cow position:
               chr11:75919682-75919930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               232, 83
               

               Conread position:
               2-316
               

               Cow position:
               chr11:7112573-7112879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               207
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               2-435
               

               Cow position:
               chr11:8262577-8262158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               326, 92
               

               Conread position:
               4-378
               

               Cow position:
               chr11:7394245-7394600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               254
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               11-441
               

               Cow position:
               chr11:43515519-43515083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 308
               

               Conread position:
               12-402
               

               Cow position:
               chr11:52462205-52462605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               15-298
               

               Cow position:
               chr11:4271698-4271423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               212, 69
               

               Conread position:
               15-379
               

               Cow position:
               chr11:53432631-53432283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-393
               

               Cow position:
               chr11:44507310-44507669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               260
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               65, 52
               

               Conread position:
               15-395
               

               Cow position:
               chr11:45110242-45110635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 238
               

               Conread position:
               15-429
               

               Cow position:
               chr11:37093924-37093526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-432
               

               Cow position:
               chr11:8243843-8244260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               302
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               232, 28
               

               Conread position:
               15-432
               

               Cow position:
               chr11:54208756-54209172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 59
               

               Conread position:
               15-441
               

               Cow position:
               chr11:9158275-9157878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr11:9220883-9220469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               289, 80
               

               Conread position:
               15-441
               

               Cow position:
               chr11:10846591-10846992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr11:23876442-23876852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr11:26125793-26125383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr11:38836279-38835869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               397, 69
               

               Conread position:
               15-441
               

               Cow position:
               chr11:53288336-53287907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               292
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               118, 66
               

               Conread position:
               15-441
               

               Cow position:
               chr11:58133494-58133917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 56
               

               Conread position:
               15-441
               

               Cow position:
               chr11:71328784-71329192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               286, 69
               

               Conread position:
               15-441
               

               Cow position:
               chr11:72110821-72110413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr11:77729387-77728978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 90
               

               Conread position:
               16-378
               

               Cow position:
               chr11:44496445-44496101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               17-391
               

               Cow position:
               chr11:24677202-24677555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 78
               

               Conread position:
               18-393
               

               Cow position:
               chr11:76375325-76374969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               18-429
               

               Cow position:
               chr11:4028409-4028014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 63
               

               Conread position:
               18-440
               

               Cow position:
               chr11:1496955-1496524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               295
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               8, 296
               

               Conread position:
               18-441
               

               Cow position:
               chr11:9736837-9736404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 289
               

               Conread position:
               18-441
               

               Cow position:
               chr11:12359278-12358874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               18-441
               

               Cow position:
               chr11:17108557-17108138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 66
               

               Conread position:
               18-441
               

               Cow position:
               chr11:19065147-19064702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 35
               

               Conread position:
               18-441
               

               Cow position:
               chr11:19103345-19102939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               18-441
               

               Cow position:
               chr11:24392468-24392873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               18-441
               

               Cow position:
               chr11:28055452-28055048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               18-441
               

               Cow position:
               chr11:37478007-37477571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               296
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               70, 156
               

               Conread position:
               18-441
               

               Cow position:
               chr11:52418506-52418936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 288
               

               Conread position:
               18-441
               

               Cow position:
               chr11:67847457-67847020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 154
               

               Conread position:
               19-330
               

               Cow position:
               chr11:39799164-39798836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               220
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               19-346
               

               Cow position:
               chr11:52530147-52530482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               79, 164
               

               Conread position:
               19-389
               

               Cow position:
               chr11:4041950-4041565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               263
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               75, 293
               

               Conread position:
               19-394
               

               Cow position:
               chr11:32682817-32683187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               234
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               54, 174
               

               Conread position:
               19-400
               

               Cow position:
               chr11:21440772-21441124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               164, 55
               

               Conread position:
               19-441
               

               Cow position:
               chr11:20921637-20921198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               19-441
               

               Cow position:
               chr11:28230633-28230201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 282
               

               Conread position:
               19-441
               

               Cow position:
               chr11:29669484-29669081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               19-441
               

               Cow position:
               chr11:36745068-36744633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 299
               

               Conread position:
               19-441
               

               Cow position:
               chr11:57628932-57628499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 157
               

               Conread position:
               20-302
               

               Cow position:
               chr11:15982756-15983055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               20-441
               

               Cow position:
               chr11:32449979-32450415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 197
               

               Conread position:
               20-441
               

               Cow position:
               chr11:67449605-67450045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 281
               

               Conread position:
               22-441
               

               Cow position:
               chr11:11987264-11987668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               279, 62
               

               Conread position:
               28-327
               

               Cow position:
               chr11:9607543-9607236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               64, 154
               

               Conread position:
               38-402
               

               Cow position:
               chr11:28062839-28063199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               89-426
               

               Cow position:
               chr11:31925406-31925733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               233
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               151, 86
               

               Conread position:
               89-441
               

               Cow position:
               chr11:13581787-13581428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               234
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               23, 203
               

               Conread position:
               94-421
               

               Cow position:
               chr11:17925361-17925040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               217
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               64, 15
               

               Conread position:
               98-441
               

               Cow position:
               chr11:3492220-3492560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               96, 202
               

               Conread position:
               100-420
               

               Cow position:
               chr11:24242653-24242969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               220
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               11, 164
               

               Conread position:
               103-347
               

               Cow position:
               chr11:81853379-81853134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               107, 172
               

               Conread position:
               104-441
               

               Cow position:
               chr11:41171475-41171145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               105-327
               

               Cow position:
               chr11:3237761-3237978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               106-317
               

               Cow position:
               chr11:38006105-38005894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               107-441
               

               Cow position:
               chr11:85394595-85394261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               307, 292
               

               Conread position:
               107-442
               

               Cow position:
               chr11:42428551-42428888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               38, 51
               

               Conread position:
               114-441
               

               Cow position:
               chr11:30126008-30125699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               231
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               118-441
               

               Cow position:
               chr11:9660176-9659851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 283
               

               Conread position:
               122-441
               

               Cow position:
               chr11:11126155-11126462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               53, 93
               

               Conread position:
               125-451
               

               Cow position:
               chr11:33044887-33044563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               211
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               36, 30
               

               Conread position:
               128-441
               

               Cow position:
               chr11:7687150-7687467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               57, 37
               

               Conread position:
               134-398
               

               Cow position:
               chr11:49076419-49076164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               179
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               135-400
               

               Cow position:
               chr11:10210717-10210456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               195
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               29, 106
               

               Conread position:
               142-436
               

               Cow position:
               chr11:87127095-87127386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               54, 17
               

               Conread position:
               142-441
               

               Cow position:
               chr11:44157991-44157688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 255
               

               Conread position:
               142-441
               

               Cow position:
               chr11:63660335-63660034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               159, 0
               

               Conread position:
               144-441
               

               Cow position:
               chr11:43731676-43731975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               207
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               28, 18
               

               Conread position:
               151-441
               

               Cow position:
               chr11:37492382-37492101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               206
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               151-441
               

               Cow position:
               chr11:40777474-40777183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 81
               

               Conread position:
               162-435
               

               Cow position:
               chr11:29234372-29234106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               145, 0
               

               Conread position:
               166-427
               

               Cow position:
               chr11:66725782-66726033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               187
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               168-441
               

               Cow position:
               chr11:25526851-25527120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               19, 215
               

               Conread position:
               170-441
               

               Cow position:
               chr11:33195335-33195071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               196
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               218, 0
               

               Conread position:
               171-435
               

               Cow position:
               chr11:32071390-32071656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               72, 117
               

               Conread position:
               176-441
               

               Cow position:
               chr11:8887867-8887602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               180-441
               

               Cow position:
               chr11:65162248-65161988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               22, 117
               

               Conread position:
               181-441
               

               Cow position:
               chr11:31414947-31414689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               188-431
               

               Cow position:
               chr11:15998187-15998436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               188-441
               

               Cow position:
               chr11:34020204-34020451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               187
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               191-441
               

               Cow position:
               chr11:21466381-21466624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               194-429
               

               Cow position:
               chr11:7073162-7072937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               194-441
               

               Cow position:
               chr11:44861226-44860977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               203-441
               

               Cow position:
               chr11:17220895-17220660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               171
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               127, 82
               

               Conread position:
               223-441
               

               Cow position:
               chr11:17280905-17280693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               15, 85
               

               Conread position:
               250-441
               

               Cow position:
               chr11:12351706-12351516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               173, 0
               

               Conread position:
               1-441
               

               Cow position:
               chr12:2281947-2282381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               193, 82
               

               Conread position:
               2-226
               

               Cow position:
               chr12:22121135-22121346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               15-204
               

               Cow position:
               chr12:21058556-21058370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               134
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               149, 67
               

               Conread position:
               15-426
               

               Cow position:
               chr12:252632-252236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               286, 69
               

               Conread position:
               15-435
               

               Cow position:
               chr12:22332052-22332450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               289
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               29, 81
               

               Conread position:
               15-436
               

               Cow position:
               chr12:20998703-20998290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 92
               

               Conread position:
               15-441
               

               Cow position:
               chr12:6407217-6406811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               412, 69
               

               Conread position:
               15-441
               

               Cow position:
               chr12:11097666-11098076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr12:21197251-21197661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr12:22206315-22205912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr12:27933517-27933111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               18-441
               

               Cow position:
               chr12:42860387-42859980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               18-441
               

               Cow position:
               chr12:43031976-43031548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               295
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               75, 48
               

               Conread position:
               19-359
               

               Cow position:
               chr12:21883420-21883779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               247
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               68, 163
               

               Conread position:
               19-441
               

               Cow position:
               chr12:8678689-8678287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               19-441
               

               Cow position:
               chr12:21207096-21207529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 384
               

               Conread position:
               88-441
               

               Cow position:
               chr12:15951763-15951425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               88-441
               

               Cow position:
               chr12:32653029-32653379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               313, 0
               

               Conread position:
               88-441
               

               Cow position:
               chr12:37558041-37558389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               310, 0
               

               Conread position:
               98-432
               

               Cow position:
               chr12:3360405-3360744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               231
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               270, 310
               

               Conread position:
               98-441
               

               Cow position:
               chr12:21255157-21254821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               98-441
               

               Cow position:
               chr12:21426197-21426528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               234
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               98-441
               

               Cow position:
               chr12:26141305-26141648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               102-441
               

               Cow position:
               chr12:1401989-1402325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               298, 0
               

               Conread position:
               104-441
               

               Cow position:
               chr12:25101566-25101227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 168
               

               Conread position:
               121-436
               

               Cow position:
               chr12:21499636-21499946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               93, 122
               

               Conread position:
               131-441
               

               Cow position:
               chr12:21901477-21901781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               218
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               38, 201
               

               Conread position:
               151-400
               

               Cow position:
               chr12:26947718-26947460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               159, 9
               

               Conread position:
               168-441
               

               Cow position:
               chr12:8310745-8311020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               169-429
               

               Cow position:
               chr12:21941342-21941598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 0
               

               Conread position:
               176-435
               

               Cow position:
               chr12:16293496-16293752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               73, 5
               

               Conread position:
               176-441
               

               Cow position:
               chr12:2368-2633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               194-400
               

               Cow position:
               chr12:48404638-48404843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               194-441
               

               Cow position:
               chr12:14663022-14662777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               212-441
               

               Cow position:
               chr12:28766410-28766182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               153
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               98, 118
               

               Conread position:
               232-400
               

               Cow position:
               chr12:42420784-42420616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-428
               

               Cow position:
               chr13:62328379-62327981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               2-441
               

               Cow position:
               chr13:3276357-3276771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 95
               

               Conread position:
               2-441
               

               Cow position:
               chr13:31831811-31832215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               2-441
               

               Cow position:
               chr13:33825537-33825118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               235, 93
               

               Conread position:
               2-441
               

               Cow position:
               chr13:34187496-34187074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               15-356
               

               Cow position:
               chr13:61951392-61951720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               231
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               107, 54
               

               Conread position:
               15-429
               

               Cow position:
               chr13:32738603-32738219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               283
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               15-433
               

               Cow position:
               chr13:15542670-15543072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               321, 69
               

               Conread position:
               15-439
               

               Cow position:
               chr13:2297620-2297187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 191
               

               Conread position:
               15-439
               

               Cow position:
               chr13:32544158-32544559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr13:4940289-4940700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr13:6668938-6668510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 92
               

               Conread position:
               15-441
               

               Cow position:
               chr13:30302276-30302680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr13:31613131-31612722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr13:31734901-31734467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 292
               

               Conread position:
               15-441
               

               Cow position:
               chr13:34867942-34868382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 308
               

               Conread position:
               15-441
               

               Cow position:
               chr13:35756439-35756854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               310, 69
               

               Conread position:
               15-441
               

               Cow position:
               chr13:54283795-54284196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               288, 80
               

               Conread position:
               15-446
               

               Cow position:
               chr13:9043736-9044129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-448
               

               Cow position:
               chr13:1593951-1593533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 69
               

               Conread position:
               16-402
               

               Cow position:
               chr13:48356529-48356901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               260
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               135, 83
               

               Conread position:
               17-447
               

               Cow position:
               chr13:34043156-34042745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               18-276
               

               Cow position:
               chr13:13323984-13324252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               18-326
               

               Cow position:
               chr13:49972889-49973216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               18-339
               

               Cow position:
               chr13:676141-676477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               232
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               69, 154
               

               Conread position:
               18-432
               

               Cow position:
               chr13:2389622-2389185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               18-441
               

               Cow position:
               chr13:3655100-3654697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               18-441
               

               Cow position:
               chr13:15925176-15924769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               18-441
               

               Cow position:
               chr13:21841022-21840581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               18-441
               

               Cow position:
               chr13:30245552-30245120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               18-441
               

               Cow position:
               chr13:32986868-32986436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 225
               

               Conread position:
               18-441
               

               Cow position:
               chr13:34326485-34326064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 217
               

               Conread position:
               18-441
               

               Cow position:
               chr13:50108641-50109077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 205
               

               Conread position:
               19-389
               

               Cow position:
               chr13:53833947-53834334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               262
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               22-440
               

               Cow position:
               chr13:15521312-15520901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               35-441
               

               Cow position:
               chr13:35029720-35030125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               279
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               63, 261
               

               Conread position:
               37-402
               

               Cow position:
               chr13:30140212-30140568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               240
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               247, 61
               

               Conread position:
               37-438
               

               Cow position:
               chr13:20543140-20542753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               321, 12
               

               Conread position:
               98-433
               

               Cow position:
               chr13:60704243-60703911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               215
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               32, 42
               

               Conread position:
               98-441
               

               Cow position:
               chr13:4872349-4872690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 297
               

               Conread position:
               98-441
               

               Cow position:
               chr13:17307756-17308088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               234
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               69, 74
               

               Conread position:
               99-432
               

               Cow position:
               chr13:15080898-15080579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               33, 166
               

               Conread position:
               104-441
               

               Cow position:
               chr13:4481760-4482090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               104-441
               

               Cow position:
               chr13:33337045-33336709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 61
               

               Conread position:
               118-441
               

               Cow position:
               chr13:34692456-34692776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               231
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               36, 92
               

               Conread position:
               131-436
               

               Cow position:
               chr13:34143358-34143050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 278
               

               Conread position:
               131-441
               

               Cow position:
               chr13:33928245-33927949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               24, 86
               

               Conread position:
               139-380
               

               Cow position:
               chr13:30237490-30237723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               171
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               114, 147
               

               Conread position:
               141-396
               

               Cow position:
               chr13:46733030-46732782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               198, 160
               

               Conread position:
               166-402
               

               Cow position:
               chr13:34936478-34936713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               183
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               28, 132
               

               Conread position:
               168-429
               

               Cow position:
               chr13:2909104-2908846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 233
               

               Conread position:
               171-429
               

               Cow position:
               chr13:34912020-34911766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               189
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               147, 0
               

               Conread position:
               176-441
               

               Cow position:
               chr13:30657612-30657351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 0
               

               Conread position:
               201-441
               

               Cow position:
               chr13:13046446-13046209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               182
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               177, 202
               

               Conread position:
               203-441
               

               Cow position:
               chr13:3058617-3058379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               173
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-396
               

               Cow position:
               chr14:46463862-46464236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               266
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               113, 94
               

               Conread position:
               1-441
               

               Cow position:
               chr14:35388071-35387640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 20
               

               Conread position:
               2-431
               

               Cow position:
               chr14:44551114-44551535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               2-441
               

               Cow position:
               chr14:40338762-40339197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 41
               

               Conread position:
               9-433
               

               Cow position:
               chr14:38533231-38532812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               298, 8
               

               Conread position:
               10-433
               

               Cow position:
               chr14:45833239-45833644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               296, 56
               

               Conread position:
               11-434
               

               Cow position:
               chr14:44376501-44376920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 86
               

               Conread position:
               15-390
               

               Cow position:
               chr14:50133984-50134349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 83
               

               Conread position:
               15-432
               

               Cow position:
               chr14:41754953-41755358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 32
               

               Conread position:
               15-435
               

               Cow position:
               chr14:46083708-46084109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr14:11155073-11154663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr14:13272334-13272748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 32
               

               Conread position:
               15-441
               

               Cow position:
               chr14:13302108-13302520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 90
               

               Conread position:
               15-441
               

               Cow position:
               chr14:17684483-17684885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr14:20781539-20781946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr14:22032598-22032192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               15-441
               

               Cow position:
               chr14:44685109-44685538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 92
               

               Conread position:
               17-441
               

               Cow position:
               chr14:16274215-16273806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               285, 67
               

               Conread position:
               18-387
               

               Cow position:
               chr14:2283043-2283424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 154
               

               Conread position:
               18-394
               

               Cow position:
               chr14:30597323-30596926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               279
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               80, 168
               

               Conread position:
               18-426
               

               Cow position:
               chr14:30585886-30585461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               18-426
               

               Cow position:
               chr14:45916465-45916876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 79
               

               Conread position:
               18-441
               

               Cow position:
               chr14:5528150-5528551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               18-441
               

               Cow position:
               chr14:17001965-17001565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 57
               

               Conread position:
               18-441
               

               Cow position:
               chr14:19329183-19328779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               19-204
               

               Cow position:
               chr14:45304550-45304374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               19-325
               

               Cow position:
               chr14:10561683-10562006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               214
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               19-326
               

               Cow position:
               chr14:33394752-33394428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               19-441
               

               Cow position:
               chr14:749628-750059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               289
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               69, 156
               

               Conread position:
               19-441
               

               Cow position:
               chr14:17492400-17491967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 170
               

               Conread position:
               19-441
               

               Cow position:
               chr14:45672992-45672555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 288
               

               Conread position:
               19-441
               

               Cow position:
               chr14:48255228-48254821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               293, 65
               

               Conread position:
               22-441
               

               Cow position:
               chr14:7471463-7471866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               22-441
               

               Cow position:
               chr14:28994771-28994365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 51
               

               Conread position:
               36-441
               

               Cow position:
               chr14:45205134-45205560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               294
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               60, 10
               

               Conread position:
               38-402
               

               Cow position:
               chr14:22018488-22018857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               252
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               94, 45
               

               Conread position:
               38-433
               

               Cow position:
               chr14:45159955-45160347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               194, 59
               

               Conread position:
               38-441
               

               Cow position:
               chr14:44225514-44225899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               40-427
               

               Cow position:
               chr14:44780809-44780441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               40-427
               

               Cow position:
               chr14:44783149-44782781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               91-436
               

               Cow position:
               chr14:44130056-44130405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               246
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               34, 177
               

               Conread position:
               96-446
               

               Cow position:
               chr14:35928326-35928673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               125, 7
               

               Conread position:
               98-369
               

               Cow position:
               chr14:17241388-17241653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               197, 0
               

               Conread position:
               104-447
               

               Cow position:
               chr14:50109733-50110077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 129
               

               Conread position:
               107-441
               

               Cow position:
               chr14:37223058-37223392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               305, 293
               

               Conread position:
               126-389
               

               Cow position:
               chr14:44580122-44580380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               6, 51
               

               Conread position:
               128-402
               

               Cow position:
               chr14:14309880-14309613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               77, 23
               

               Conread position:
               128-441
               

               Cow position:
               chr14:31607742-31607430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               206
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               185, 59
               

               Conread position:
               131-441
               

               Cow position:
               chr14:7831359-7831048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               217
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               22, 125
               

               Conread position:
               135-396
               

               Cow position:
               chr14:16920502-16920237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               135-441
               

               Cow position:
               chr14:47623756-47624059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 37
               

               Conread position:
               139-432
               

               Cow position:
               chr14:40170491-40170186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               182, 203
               

               Conread position:
               142-441
               

               Cow position:
               chr14:45079732-45080024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               209
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               201, 22
               

               Conread position:
               144-441
               

               Cow position:
               chr14:11467792-11468089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               204
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               19, 80
               

               Conread position:
               148-419
               

               Cow position:
               chr14:14422807-14422543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               150-441
               

               Cow position:
               chr14:23256556-23256849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               202
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               140, 258
               

               Conread position:
               151-400
               

               Cow position:
               chr14:44261890-44261639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               112, 100
               

               Conread position:
               170-440
               

               Cow position:
               chr14:9044784-9045054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               46, 36
               

               Conread position:
               175-441
               

               Cow position:
               chr14:29048670-29048411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               135, 88
               

               Conread position:
               176-435
               

               Cow position:
               chr14:34774827-34775078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               176-435
               

               Cow position:
               chr14:41085582-41085328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 0
               

               Conread position:
               176-441
               

               Cow position:
               chr14:45712752-45712485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 5
               

               Conread position:
               176-441
               

               Cow position:
               chr14:45850453-45850715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 5
               

               Conread position:
               181-390
               

               Cow position:
               chr14:1499983-1500193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               186, 0
               

               Conread position:
               181-435
               

               Cow position:
               chr14:23529762-23529526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               188-441
               

               Cow position:
               chr14:23690989-23690734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               189-441
               

               Cow position:
               chr14:45767247-45767496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               180
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               131, 22
               

               Conread position:
               191-433
               

               Cow position:
               chr14:36967498-36967741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               176
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               191-441
               

               Cow position:
               chr14:13660752-13660497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               191-441
               

               Cow position:
               chr14:44856185-44855935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               202-432
               

               Cow position:
               chr14:13326858-13326630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               186, 0
               

               Conread position:
               206-441
               

               Cow position:
               chr14:13778119-13778354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               207-395
               

               Cow position:
               chr14:15277602-15277407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               148
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               255-441
               

               Cow position:
               chr14:44421862-44422047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               1-402
               

               Cow position:
               chr15:32692608-32693013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 83
               

               Conread position:
               1-429
               

               Cow position:
               chr15:491102-490680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               279
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               74, 48
               

               Conread position:
               1-429
               

               Cow position:
               chr15:4960738-4961133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               281
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               1-434
               

               Cow position:
               chr15:35649139-35648731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               1-436
               

               Cow position:
               chr15:32680495-32680061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 55
               

               Conread position:
               1-441
               

               Cow position:
               chr15:8407622-8408054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               283
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               64, 110
               

               Conread position:
               2-429
               

               Cow position:
               chr15:685230-685651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               290
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               193, 33
               

               Conread position:
               2-433
               

               Cow position:
               chr15:6387233-6386809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               429, 93
               

               Conread position:
               2-441
               

               Cow position:
               chr15:35734534-35734948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               11-441
               

               Cow position:
               chr15:4384351-4384766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 74
               

               Conread position:
               11-441
               

               Cow position:
               chr15:44068876-44069284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               12-401
               

               Cow position:
               chr15:37391586-37391959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 0
               
15-271UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr15:53338133-53338384 (view  custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               68, 0
               
15-330UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr15:8673498-8673167 (view  custom track)

               
               
               
Alignm length: 333

               
               
               
Alignm identity: 233

               
               
               
Alignm E-value: 9.94922e-44

               
               
               
Alignm gaps (pig, cow): 70, 303
15-347UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr15:324004-324324 (view  custom track)

               
               
               
Alignm length: 335

               
               
               
Alignm identity: 217

               
               
               
Alignm E-value: 1e-24

               
               
               
Alignm gaps (pig, cow): 269, 22

               
               
               Conread position:15-381
               
               
               Cow position:chr15:14583535-14583170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 273

               
               
               Conread position:15-401
               
               
               Cow position:chr15:24793140-24793508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 68

               
               
               Conread position:15-402
               
               
               Cow position:chr15:21448149-21448515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:270
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):142, 87

               
               
               Conread position:15-429
               
               
               Cow position:chr15:17291490-17291935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:15-433
               
               
               Cow position:chr15:4648929-4649321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):342, 69

               
               
               Conread position:15-433
               
               
               Cow position:chr15:7259676-7260112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:297
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):73, 226

               
               
               Conread position:15-436
               
               
               Cow position:chr15:6594772-6594338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 50

               
               
               Conread position:15-441
               
               
               Cow position:chr15:689867-690282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 230

               
               
               Conread position:15-441
               
               
               Cow position:chr15:8098556-8098979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:15-441
               
               
               Cow position:chr15:10479614-10479210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:292
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):179, 68

               
               
               Conread position:15-441
               
               
               Cow position:chr15:10887674-10888101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 92

               
               
               Conread position:15-441
               
               
               Cow position:chr15:12422082-12421675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr15:12614148-12614558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):227, 7

               
               
               Conread position:15-441
               
               
               Cow position:chr15:15348039-15347629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr15:17040167-17039761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr15:18268926-18268496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:297
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):73, 242

               
               
               Conread position:15-441
               
               
               Cow position:chr15:18575805-18576215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 76

               
               
               Conread position:15-441
               
               
               Cow position:chr15:21816667-21816256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr15:31357985-31358394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):384, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr15:32495301-32494894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr15:32709596-32710036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:292
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):73, 299

               
               
               Conread position:15-441
               
               
               Cow position:chr15:35754735-35754336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr15:38978984-38979410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 68

               
               
               Conread position:15-441
               
               
               Cow position:chr15:42490287-42490696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr15:42935799-42936205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:16-300
               
               
               Cow position:chr15:52635241-52635516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:16-402
               
               
               Cow position:chr15:38957949-38957569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):282, 56

               
               
               Conread position:16-441
               
               
               Cow position:chr15:2593748-2593318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:293
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):77, 311

               
               
               Conread position:17-388
               
               
               Cow position:chr15:7927714-7928070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:17-435
               
               
               Cow position:chr15:4630834-4630423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:284
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):247, 84

               
               
               Conread position:17-441
               
               
               Cow position:chr15:370598-370165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 21

               
               
               Conread position:17-441
               
               
               Cow position:chr15:36641710-36642118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 66

               
               
               Conread position:18-342
               
               
               Cow position:chr15:21666936-21666627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:18-393
               
               
               Cow position:chr15:28491081-28490700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):70, 277

               
               
               Conread position:18-429
               
               
               Cow position:chr15:1763166-1763571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 77

               
               
               Conread position:18-433
               
               
               Cow position:chr15:2923592-2924001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 77

               
               
               Conread position:18-433
               
               
               Cow position:chr15:7933065-7933459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):413, 69

               
               
               Conread position:18-436
               
               
               Cow position:chr15:4681294-4681703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 56

               
               
               Conread position:18-441
               
               
               Cow position:chr15:2075744-2076144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:18-441
               
               
               Cow position:chr15:17081128-17080697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:295
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):70, 294

               
               
               Conread position:18-441
               
               
               Cow position:chr15:22920188-22920616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 19

               
               
               Conread position:18-441
               
               
               Cow position:chr15:50124882-50124447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 199

               
               
               Conread position:18-441
               
               
               Cow position:chr15:50144550-50144994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:295
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):75, 433

               
               
               Conread position:18-441
               
               
               Cow position:chr15:51215677-51216085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 66

               
               
               Conread position:18-447
               
               
               Cow position:chr15:55260-55698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:299
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):25, 248

               
               
               Conread position:19-307
               
               
               Cow position:chr15:2640751-2641056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:19-358
               
               
               Cow position:chr15:4143704-4143352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):68, 153

               
               
               Conread position:19-393
               
               
               Cow position:chr15:1520094-1519700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:266
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:19-433
               
               
               Cow position:chr15:6554772-6554369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):412, 56

               
               
               Conread position:19-441
               
               
               Cow position:chr15:327490-327899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr15:7186984-7186546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 326

               
               
               Conread position:19-441
               
               
               Cow position:chr15:21878301-21877866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:291
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):68, 299

               
               
               Conread position:19-441
               
               
               Cow position:chr15:22205061-22204622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:23-441
               
               
               Cow position:chr15:4764304-4764705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):390, 61

               
               
               Conread position:40-436
               
               
               Cow position:chr15:2011192-2011570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:265
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:48-400
               
               
               Cow position:chr15:45885917-45886256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):14, 6

               
               
               Conread position:48-441
               
               
               Cow position:chr15:49676149-49676517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:266
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):86, 47

               
               
               Conread position:49-379
               
               
               Cow position:chr15:6456394-6456719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 48

               
               
               Conread position:51-441
               
               
               Cow position:chr15:51799858-51800230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):26, 47

               
               
               Conread position:60-441
               
               
               Cow position:chr15:44827923-44828306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:85-433
               
               
               Cow position:chr15:6156823-6156485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):346, 118

               
               
               Conread position:87-447
               
               
               Cow position:chr15:7895068-7894705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:88-393
               
               
               Cow position:chr15:32723036-32722735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):48, 158

               
               
               Conread position:88-441
               
               
               Cow position:chr15:1781401-1781745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):154, 176

               
               
               Conread position:92-309
               
               
               Cow position:chr15:7541120-7541336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:98-402
               
               
               Cow position:chr15:17219702-17219416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:98-433
               
               
               Cow position:chr15:7544030-7544364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 49

               
               
               Conread position:98-441
               
               
               Cow position:chr15:1771650-1771990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 108

               
               
               Conread position:98-441
               
               
               Cow position:chr15:11598963-11598623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):259, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr15:13428197-13428530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):206, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr15:20748561-20748907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 0

               
               
               Conread position:102-441
               
               
               Cow position:chr15:2648501-2648165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:104-441
               
               
               Cow position:chr15:7836397-7836735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 18

               
               
               Conread position:104-441
               
               
               Cow position:chr15:24294253-24294582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:107-441
               
               
               Cow position:chr15:525693-525359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):292, 21

               
               
               Conread position:107-441
               
               
               Cow position:chr15:18333665-18333336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:113-441
               
               
               Cow position:chr15:4794837-4795171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):14, 211

               
               
               Conread position:114-441
               
               
               Cow position:chr15:17272212-17271886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):198, 28

               
               
               Conread position:116-402
               
               
               Cow position:chr15:41365343-41365635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:121-429
               
               
               Cow position:chr15:1236578-1236885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):227, 34

               
               
               Conread position:121-441
               
               
               Cow position:chr15:317158-316838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 216

               
               
               Conread position:122-398
               
               
               Cow position:chr15:2677129-2676851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:122-441
               
               
               Cow position:chr15:2006714-2007031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):19, 74

               
               
               Conread position:123-441
               
               
               Cow position:chr15:6278089-6277760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 192

               
               
               Conread position:125-435
               
               
               Cow position:chr15:17787968-17787672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:128-400
               
               
               Cow position:chr15:1662577-1662833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:129-441
               
               
               Cow position:chr15:19738868-19738562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 36

               
               
               Conread position:131-441
               
               
               Cow position:chr15:7233501-7233803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):133, 28

               
               
               Conread position:133-431
               
               
               Cow position:chr15:6650866-6650562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):22, 187

               
               
               Conread position:142-436
               
               
               Cow position:chr15:42321223-42320930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):256, 276

               
               
               Conread position:145-441
               
               
               Cow position:chr15:443810-444100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:151-441
               
               
               Cow position:chr15:3262202-3261916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 122

               
               
               Conread position:162-441
               
               
               Cow position:chr15:8001032-8000753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 17

               
               
               Conread position:169-433
               
               
               Cow position:chr15:4677724-4677979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):35, 115

               
               
               Conread position:176-402
               
               
               Cow position:chr15:35747520-35747748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:176-429
               
               
               Cow position:chr15:6371612-6371360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:177-441
               
               
               Cow position:chr15:21960740-21961004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:178-441
               
               
               Cow position:chr15:36970152-36970415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:179-399
               
               
               Cow position:chr15:16540548-16540763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:179-441
               
               
               Cow position:chr15:4195678-4195954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:181-394
               
               
               Cow position:chr15:3038294-3038076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:188-441
               
               
               Cow position:chr15:10787851-10787603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):215, 122

               
               
               Conread position:192-441
               
               
               Cow position:chr15:36648156-36648403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):212, 0

               
               
               Conread position:194-389
               
               
               Cow position:chr15:25789946-25789751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):146, 135

               
               
               Conread position:194-441
               
               
               Cow position:chr15:23157585-23157336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):107, 42

               
               
               Conread position:201-441
               
               
               Cow position:chr15:4670675-4670910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:205-441
               
               
               Cow position:chr15:4921403-4921635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:209-441
               
               
               Cow position:chr15:8749691-8749924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):29, 11

               
               
               Conread position:210-441
               
               
               Cow position:chr15:6077994-6078225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):102, 148

               
               
               Conread position:230-435
               
               
               Cow position:chr15:6472623-6472425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:255-441
               
               
               Cow position:chr15:4733169-4733353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):52, 95

               
               
               Conread position:297-441
               
               
               Cow position:chr15:4170344-4170202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):106, 116

               
               
               Conread position:1-402
               
               
               Cow position:chr16:36232881-36232498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):40, 34

               
               
               Conread position:1-441
               
               
               Cow position:chr16:29031636-29032061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 17

               
               
               Conread position:1-441
               
               
               Cow position:chr16:49236398-49235970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 17

               
               
               Conread position:2-436
               
               
               Cow position:chr16:20255576-20255171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:2-441
               
               
               Cow position:chr16:29676574-29676161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:4-441
               
               
               Cow position:chr16:2484413-2483995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 80

               
               
               Conread position:4-441
               
               
               Cow position:chr16:15183531-15183947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:13-436
               
               
               Cow position:chr16:25084350-25084762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):327, 82

               
               
               Conread position:15-265
               
               
               Cow position:chr16:37446612-37446384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-276
               
               
               Cow position:chr16:2412280-2412037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:15-305
               
               
               Cow position:chr16:51083305-51083583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):178, 74

               
               
               Conread position:15-429
               
               
               Cow position:chr16:1429953-1430360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 92

               
               
               Conread position:15-433
               
               
               Cow position:chr16:49257863-49257437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 37

               
               
               Conread position:15-439
               
               
               Cow position:chr16:408297-407890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):384, 68

               
               
               Conread position:15-440
               
               
               Cow position:chr16:29045766-29046164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr16:7676959-7676552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr16:9776872-9777276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr16:12539188-12538780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr16:25440351-25440763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):295, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr16:25458739-25458326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr16:40297438-40297031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-447
               
               
               Cow position:chr16:8817370-8816955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:16-441
               
               
               Cow position:chr16:32934874-32935280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:285
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):61, 122

               
               
               Conread position:17-402
               
               
               Cow position:chr16:16687604-16687975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 67

               
               
               Conread position:17-432
               
               
               Cow position:chr16:42051610-42051221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):15, 79

               
               
               Conread position:17-439
               
               
               Cow position:chr16:19714101-19713706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 17

               
               
               Conread position:18-432
               
               
               Cow position:chr16:18688392-18687993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 14

               
               
               Conread position:18-441
               
               
               Cow position:chr16:31468-31892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:300
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):80, 183

               
               
               Conread position:18-441
               
               
               Cow position:chr16:28171655-28171214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 214

               
               
               Conread position:18-442
               
               
               Cow position:chr16:10376558-10376128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:298
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):80, 230

               
               
               Conread position:19-439
               
               
               Cow position:chr16:32605531-32605970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 135

               
               
               Conread position:19-440
               
               
               Cow position:chr16:10204677-10204270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):348, 65

               
               
               Conread position:19-441
               
               
               Cow position:chr16:2728576-2728170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr16:5660580-5661005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 275

               
               
               Conread position:35-441
               
               
               Cow position:chr16:4303741-4303326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:273
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):63, 141

               
               
               Conread position:35-441
               
               
               Cow position:chr16:43898513-43898124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:53-428
               
               
               Cow position:chr16:31593142-31592775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:82-441
               
               
               Cow position:chr16:24881904-24881544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 298

               
               
               Conread position:85-441
               
               
               Cow position:chr16:23253710-23253359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:86-441
               
               
               Cow position:chr16:25157422-25157074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:89-427
               
               
               Cow position:chr16:9929354-9929691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 20

               
               
               Conread position:97-435
               
               
               Cow position:chr16:51685249-51685587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):33, 21

               
               
               Conread position:98-396
               
               
               Cow position:chr16:21185083-21185381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr16:6942424-6942767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:99-434
               
               
               Cow position:chr16:9457327-9457664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):14, 82

               
               
               Conread position:99-441
               
               
               Cow position:chr16:44964852-44965202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:234
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):23, 219

               
               
               Conread position:104-365
               
               
               Cow position:chr16:14666980-14666719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:104-441
               
               
               Cow position:chr16:15565560-15565895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:107-349
               
               
               Cow position:chr16:5589011-5589251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):209, 0

               
               
               Conread position:107-433
               
               
               Cow position:chr16:15491532-15491845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):320, 53

               
               
               Conread position:107-441
               
               
               Cow position:chr16:1568636-1568309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 72

               
               
               Conread position:107-441
               
               
               Cow position:chr16:25340786-25341113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:116-441
               
               
               Cow position:chr16:7905465-7905787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:118-448
               
               
               Cow position:chr16:54647150-54647479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 137

               
               
               Conread position:120-441
               
               
               Cow position:chr16:28472272-28471951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:121-432
               
               
               Cow position:chr16:31376399-31376105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):278, 20

               
               
               Conread position:122-348
               
               
               Cow position:chr16:5648069-5648290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):188, 101

               
               
               Conread position:127-393
               
               
               Cow position:chr16:2239894-2239634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:128-441
               
               
               Cow position:chr16:29982106-29982413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):73, 158

               
               
               Conread position:131-436
               
               
               Cow position:chr16:42740576-42740282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:142-402
               
               
               Cow position:chr16:15369287-15369539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):54, 126

               
               
               Conread position:145-435
               
               
               Cow position:chr16:14422566-14422855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):256, 17

               
               
               Conread position:160-446
               
               
               Cow position:chr16:11052040-11052318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 19

               
               
               Conread position:172-441
               
               
               Cow position:chr16:6549646-6549377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 161

               
               
               Conread position:175-441
               
               
               Cow position:chr16:10437136-10437399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 0

               
               
               Conread position:191-441
               
               
               Cow position:chr16:36282291-36282545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:193-441
               
               
               Cow position:chr16:26662650-26662892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):202, 89

               
               
               Conread position:198-362
               
               
               Cow position:chr16:39818526-39818692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:198-441
               
               
               Cow position:chr16:23982213-23982456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:199-356
               
               
               Cow position:chr16:5483419-5483264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):135, 83

               
               
               Conread position:199-441
               
               
               Cow position:chr16:27734902-27734660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:283-441
               
               
               Cow position:chr16:2411983-2411825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-190
               
               
               Cow position:chr17:455557-455374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:2-332
               
               
               Cow position:chr17:1945491-1945790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):299, 44

               
               
               Conread position:2-441
               
               
               Cow position:chr17:1284451-1284038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 97

               
               
               Conread position:15-398
               
               
               Cow position:chr17:31200760-31200387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):292, 86

               
               
               Conread position:15-400
               
               
               Cow position:chr17:6259019-6259382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):382, 69

               
               
               Conread position:15-402
               
               
               Cow position:chr17:15370397-15370759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:15-434
               
               
               Cow position:chr17:14326168-14325780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 80

               
               
               Conread position:15-436
               
               
               Cow position:chr17:2249273-2248865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:15-436
               
               
               Cow position:chr17:4059412-4059824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 55

               
               
               Conread position:15-440
               
               
               Cow position:chr17:40803704-40804119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr17:153148-152749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 28

               
               
               Conread position:15-441
               
               
               Cow position:chr17:13857474-13857051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 51

               
               
               Conread position:15-441
               
               
               Cow position:chr17:18104369-18103959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr17:43987798-43988256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):73, 418

               
               
               Conread position:15-448
               
               
               Cow position:chr17:16860260-16859828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):266, 31

               
               
               Conread position:18-440
               
               
               Cow position:chr17:2261402-2261830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 285

               
               
               Conread position:18-441
               
               
               Cow position:chr17:8208391-8208828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 306

               
               
               Conread position:18-441
               
               
               Cow position:chr17:11088423-11088003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 114

               
               
               Conread position:18-441
               
               
               Cow position:chr17:14217744-14217303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:18-441
               
               
               Cow position:chr17:20666439-20666005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:18-441
               
               
               Cow position:chr17:24780333-24780769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 165

               
               
               Conread position:19-436
               
               
               Cow position:chr17:4080960-4081367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 25

               
               
               Conread position:19-441
               
               
               Cow position:chr17:229007-228580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:287
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):74, 102

               
               
               Conread position:19-441
               
               
               Cow position:chr17:1383529-1383093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 392

               
               
               Conread position:19-441
               
               
               Cow position:chr17:11782654-11783092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr17:19270031-19269645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:286
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):348, 70

               
               
               Conread position:19-441
               
               
               Cow position:chr17:22160198-22160637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:21-374
               
               
               Cow position:chr17:6119435-6119805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:23-441
               
               
               Cow position:chr17:14893448-14893882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:295
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):54, 190

               
               
               Conread position:88-360
               
               
               Cow position:chr17:180992-181257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:88-436
               
               
               Cow position:chr17:15157583-15157245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:89-439
               
               
               Cow position:chr17:2578934-2579278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:98-396
               
               
               Cow position:chr17:249307-249598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):208, 0

               
               
               Conread position:98-400
               
               
               Cow position:chr17:9654071-9653768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):297, 0

               
               
               Conread position:98-433
               
               
               Cow position:chr17:24633335-24633670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:103-393
               
               
               Cow position:chr17:15322214-15322504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:104-429
               
               
               Cow position:chr17:13929059-13929377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:106-324
               
               
               Cow position:chr17:31768884-31768666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:107-354
               
               
               Cow position:chr17:18302377-18302139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):225, 11

               
               
               Conread position:115-393
               
               
               Cow position:chr17:55284-55009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):46, 62

               
               
               Conread position:118-441
               
               
               Cow position:chr17:20401076-20401405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):9, 55

               
               
               Conread position:120-441
               
               
               Cow position:chr17:3643435-3643115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:122-427
               
               
               Cow position:chr17:2146625-2146925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):188, 18

               
               
               Conread position:124-441
               
               
               Cow position:chr17:16889533-16889846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 129

               
               
               Conread position:131-328
               
               
               Cow position:chr17:18186818-18186619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):24, 193

               
               
               Conread position:131-401
               
               
               Cow position:chr17:44853515-44853247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):24, 100

               
               
               Conread position:131-441
               
               
               Cow position:chr17:22430071-22429761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 126

               
               
               Conread position:131-441
               
               
               Cow position:chr17:23857636-23857313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):97, 45

               
               
               Conread position:141-394
               
               
               Cow position:chr17:4294818-4295052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:142-441
               
               
               Cow position:chr17:25737086-25737384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 0

               
               
               Conread position:156-430
               
               
               Cow position:chr17:19609463-19609183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 163

               
               
               Conread position:166-434
               
               
               Cow position:chr17:39933134-39933397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):124, 167

               
               
               Conread position:168-396
               
               
               Cow position:chr17:2286824-2287053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):19, 165

               
               
               Conread position:168-402
               
               
               Cow position:chr17:20088300-20088071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):19, 55

               
               
               Conread position:169-441
               
               
               Cow position:chr17:15435244-15435512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:172-441
               
               
               Cow position:chr17:27345259-27345526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 178

               
               
               Conread position:176-400
               
               
               Cow position:chr17:22131397-22131622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:187-440
               
               
               Cow position:chr17:6002546-6002292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):127, 181

               
               
               Conread position:191-434
               
               
               Cow position:chr17:32024724-32024482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 0

               
               
               Conread position:194-436
               
               
               Cow position:chr17:28109570-28109802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:197-441
               
               
               Cow position:chr17:35591702-35591936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:239-434
               
               
               Cow position:chr17:2173401-2173593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):156, 80

               
               
               Conread position:243-441
               
               
               Cow position:chr17:15849924-15850119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:252-433
               
               
               Cow position:chr17:1879624-1879806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):121, 161

               
               
               Conread position:255-396
               
               
               Cow position:chr17:2737914-2738054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:306-441
               
               
               Cow position:chr17:20183640-20183506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):34, 112

               
               
               Conread position:1-441
               
               
               Cow position:chr18:16660504-16660075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:2-342
               
               
               Cow position:chr18:29236273-29236609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:2-441
               
               
               Cow position:chr18:43147406-43146995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):305, 60

               
               
               Conread position:15-195
               
               
               Cow position:chr18:32293310-32293481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):16, 83

               
               
               Conread position:15-398
               
               
               Cow position:chr18:14129814-14130180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-429
               
               
               Cow position:chr18:37504585-37504980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:15-429
               
               
               Cow position:chr18:45958217-45958608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:15-433
               
               
               Cow position:chr18:54024848-54024437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):416, 80

               
               
               Conread position:15-440
               
               
               Cow position:chr18:33335385-33335796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 80

               
               
               Conread position:15-441
               
               
               Cow position:chr18:16177094-16176678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr18:28974378-28973974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr18:36507852-36508262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr18:41841306-41840896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr18:51480359-51480766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 91

               
               
               Conread position:15-445
               
               
               Cow position:chr18:11275596-11275170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:299
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):78, 43

               
               
               Conread position:16-284
               
               
               Cow position:chr18:43200313-43200566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:18-440
               
               
               Cow position:chr18:27838775-27838375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 66

               
               
               Conread position:18-441
               
               
               Cow position:chr18:19351866-19352315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:18-441
               
               
               Cow position:chr18:23797173-23797578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:18-441
               
               
               Cow position:chr18:44621247-44621688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 157

               
               
               Conread position:18-441
               
               
               Cow position:chr18:51659916-51660346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:296
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):70, 158

               
               
               Conread position:18-441
               
               
               Cow position:chr18:55089435-55088996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr18:25349564-25349968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr18:37586173-37585734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:88-441
               
               
               Cow position:chr18:16078281-16078628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:88-441
               
               
               Cow position:chr18:47741594-47741947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:98-326
               
               
               Cow position:chr18:23746386-23746158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr18:33953984-33953638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 237

               
               
               Conread position:119-441
               
               
               Cow position:chr18:39748186-39748507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 76

               
               
               Conread position:120-425
               
               
               Cow position:chr18:54002112-54002405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:128-441
               
               
               Cow position:chr18:14415596-14415905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 17

               
               
               Conread position:128-441
               
               
               Cow position:chr18:37599913-37599598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:139-433
               
               
               Cow position:chr18:54172216-54171921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 92

               
               
               Conread position:153-436
               
               
               Cow position:chr18:35335123-35335413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:160-441
               
               
               Cow position:chr18:48221530-48221806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:163-441
               
               
               Cow position:chr18:23944720-23944442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:172-441
               
               
               Cow position:chr18:47719909-47719640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):140, 234

               
               
               Conread position:176-431
               
               
               Cow position:chr18:51310251-51310505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):215, 116

               
               
               Conread position:176-436
               
               
               Cow position:chr18:33358529-33358791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 215

               
               
               Conread position:176-441
               
               
               Cow position:chr18:2020013-2019757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:187-441
               
               
               Cow position:chr18:22602162-22602416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:188-441
               
               
               Cow position:chr18:1520804-1521060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 120

               
               
               Conread position:191-441
               
               
               Cow position:chr18:32293456-32293704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:193-441
               
               
               Cow position:chr18:40478066-40478312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:194-441
               
               
               Cow position:chr18:17992879-17992633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 0

               
               
               Conread position:194-441
               
               
               Cow position:chr18:33268526-33268770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:197-441
               
               
               Cow position:chr18:51257668-51257912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:198-441
               
               
               Cow position:chr18:32651682-32651924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 203

               
               
               Conread position:205-441
               
               
               Cow position:chr18:27986722-27986957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:218-436
               
               
               Cow position:chr18:19540164-19539949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):177, 53

               
               
               Conread position:256-432
               
               
               Cow position:chr18:51610750-51610926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):142, 147

               
               
               Conread position:256-441
               
               
               Cow position:chr18:51464727-51464546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:1-395
               
               
               Cow position:chr19:76733-76348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):380, 94

               
               
               Conread position:2-436
               
               
               Cow position:chr19:4533244-4532819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 83

               
               
               Conread position:2-441
               
               
               Cow position:chr19:33930-34353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):295, 82

               
               
               Conread position:11-195
               
               
               Cow position:chr19:39546187-39546366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:15-282
               
               
               Cow position:chr19:562186-561929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:15-330
               
               
               Cow position:chr19:544384-544068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 7

               
               
               Conread position:15-386
               
               
               Cow position:chr19:33872767-33873117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-402
               
               
               Cow position:chr19:6552931-6553288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:262
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):26, 20

               
               
               Conread position:15-402
               
               
               Cow position:chr19:36476885-36477250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr19:772102-772532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 159

               
               
               Conread position:15-441
               
               
               Cow position:chr19:4252825-4252425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr19:10672783-10672373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr19:28582112-28581721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):363, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr19:39390050-39390450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):317, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr19:40852907-40852497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr19:55078273-55078679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:16-330
               
               
               Cow position:chr19:27053304-27053012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:18-441
               
               
               Cow position:chr19:7341565-7342001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 374

               
               
               Conread position:18-441
               
               
               Cow position:chr19:52152750-52152328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:292
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):75, 150

               
               
               Conread position:19-441
               
               
               Cow position:chr19:171738-172144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr19:32193078-32193510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:293
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):68, 239

               
               
               Conread position:19-441
               
               
               Cow position:chr19:32244166-32244617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:297
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr19:43143214-43143649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 162

               
               
               Conread position:20-441
               
               
               Cow position:chr19:32212565-32212137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 168

               
               
               Conread position:21-435
               
               
               Cow position:chr19:685349-685770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:294
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):67, 292

               
               
               Conread position:22-441
               
               
               Cow position:chr19:4385008-4385418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 89

               
               
               Conread position:35-441
               
               
               Cow position:chr19:33941157-33941545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:38-441
               
               
               Cow position:chr19:30754715-30755111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):149, 45

               
               
               Conread position:60-441
               
               
               Cow position:chr19:260994-261369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 50

               
               
               Conread position:73-423
               
               
               Cow position:chr19:547958-548304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):72, 25

               
               
               Conread position:83-441
               
               
               Cow position:chr19:171163-170807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:247
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:88-441
               
               
               Cow position:chr19:378293-377941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:249
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):220, 69

               
               
               Conread position:88-441
               
               
               Cow position:chr19:28592870-28593210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):202, 71

               
               
               Conread position:90-435
               
               
               Cow position:chr19:35376147-35376484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:92-435
               
               
               Cow position:chr19:32183857-32183521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:92-442
               
               
               Cow position:chr19:40888063-40887712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:97-451
               
               
               Cow position:chr19:37496-37839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):69, 194

               
               
               Conread position:103-441
               
               
               Cow position:chr19:440049-439710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:107-441
               
               
               Cow position:chr19:203562-203896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 182

               
               
               Conread position:110-441
               
               
               Cow position:chr19:29209169-29209494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 48

               
               
               Conread position:118-369
               
               
               Cow position:chr19:801594-801852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:118-436
               
               
               Cow position:chr19:20125245-20125549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):229, 40

               
               
               Conread position:131-441
               
               
               Cow position:chr19:39546264-39546557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):22, 35

               
               
               Conread position:135-435
               
               
               Cow position:chr19:416274-416580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:165-444
               
               
               Cow position:chr19:35978923-35979203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):7, 178

               
               
               Conread position:167-441
               
               
               Cow position:chr19:30371934-30372215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):20, 219

               
               
               Conread position:171-441
               
               
               Cow position:chr19:31341387-31341639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):21, 10

               
               
               Conread position:180-436
               
               
               Cow position:chr19:32238184-32237929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):7, 50

               
               
               Conread position:187-478
               
               
               Cow position:chr19:5865161-5864872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):62, 151

               
               
               Conread position:188-400
               
               
               Cow position:chr19:350894-350675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):97, 74

               
               
               Conread position:189-358
               
               
               Cow position:chr19:25622737-25622567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:194-441
               
               
               Cow position:chr19:7487999-7488246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:194-441
               
               
               Cow position:chr19:39688236-39688476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:197-433
               
               
               Cow position:chr19:32665222-32665458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:197-441
               
               
               Cow position:chr19:1031803-1032039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:262-432
               
               
               Cow position:chr19:893848-893675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):127, 57

               
               
               Conread position:1-401
               
               
               Cow position:chr2:32459061-32458671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):285, 68

               
               
               Conread position:1-402
               
               
               Cow position:chr2:54649842-54649461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:275
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:1-430
               
               
               Cow position:chr2:14560119-14560562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:269
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):92, 283

               
               
               Conread position:1-433
               
               
               Cow position:chr2:32654295-32654716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):393, 94

               
               
               Conread position:1-447
               
               
               Cow position:chr2:6877449-6877877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 14

               
               
               Conread position:2-332
               
               
               Cow position:chr2:6879129-6879446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:2-402
               
               
               Cow position:chr2:10844374-10843999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 30

               
               
               Conread position:2-402
               
               
               Cow position:chr2:49603681-49604067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:2-436
               
               
               Cow position:chr2:16288201-16288623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:2-440
               
               
               Cow position:chr2:2363116-2363529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 95

               
               
               Conread position:2-441
               
               
               Cow position:chr2:2102491-2102092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:303
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):299, 93

               
               
               Conread position:11-396
               
               
               Cow position:chr2:47604844-47604465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:12-441
               
               
               Cow position:chr2:36032103-36031689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 72

               
               
               Conread position:15-339
               
               
               Cow position:chr2:7901025-7901340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):209, 80

               
               
               Conread position:15-379
               
               
               Cow position:chr2:28792024-28792369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 69

               
               
               Conread position:15-394
               
               
               Cow position:chr2:36979068-36979432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 68

               
               
               Conread position:15-402
               
               
               Cow position:chr2:81255775-81256142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:15-402
               
               
               Cow position:chr2:85069275-85068915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:15-429
               
               
               Cow position:chr2:10187256-10186864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 69

               
               
               Conread position:15-432
               
               
               Cow position:chr2:13046712-13046309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):384, 69

               
               
               Conread position:15-433
               
               
               Cow position:chr2:10733868-10733467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:15-436
               
               
               Cow position:chr2:2357496-2357087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:15-436
               
               
               Cow position:chr2:67421900-67421474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 69

               
               
               Conread position:15-439
               
               
               Cow position:chr2:28651259-28650852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:15-440
               
               
               Cow position:chr2:32388525-32388941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 79

               
               
               Conread position:15-441
               
               
               Cow position:chr2:6959708-6960121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):402, 68

               
               
               Conread position:15-441
               
               
               Cow position:chr2:8117206-8117628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr2:12225175-12224771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):393, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr2:16899211-16899622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):384, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr2:22076755-22077164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 68

               
               
               Conread position:15-441
               
               
               Cow position:chr2:25031530-25031100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 170

               
               
               Conread position:15-441
               
               
               Cow position:chr2:41149026-41149419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr2:42672443-42672010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 194

               
               
               Conread position:15-441
               
               
               Cow position:chr2:45214290-45213880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr2:50984258-50983852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr2:52061639-52062042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr2:56438750-56438344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):416, 47

               
               
               Conread position:15-441
               
               
               Cow position:chr2:78761455-78761851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:15-442
               
               
               Cow position:chr2:1673682-1673277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:15-447
               
               
               Cow position:chr2:10269711-10269279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 367

               
               
               Conread position:15-447
               
               
               Cow position:chr2:24921312-24921727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:17-441
               
               
               Cow position:chr2:202692-202275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 78

               
               
               Conread position:18-244
               
               
               Cow position:chr2:25244335-25244554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:18-396
               
               
               Cow position:chr2:213287-212898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 157

               
               
               Conread position:18-436
               
               
               Cow position:chr2:41685449-41685884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:18-436
               
               
               Cow position:chr2:57334142-57334571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 172

               
               
               Conread position:18-440
               
               
               Cow position:chr2:54736567-54736998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 288

               
               
               Conread position:18-441
               
               
               Cow position:chr2:2185286-2184881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):125, 66

               
               
               Conread position:18-441
               
               
               Cow position:chr2:2380064-2380501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 296

               
               
               Conread position:18-441
               
               
               Cow position:chr2:2413854-2413421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 226

               
               
               Conread position:18-441
               
               
               Cow position:chr2:39420532-39420968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 156

               
               
               Conread position:18-441
               
               
               Cow position:chr2:41656024-41656460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 205

               
               
               Conread position:18-441
               
               
               Cow position:chr2:44090242-44090675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 289

               
               
               Conread position:18-441
               
               
               Cow position:chr2:47039468-47039037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:292
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):79, 306

               
               
               Conread position:18-441
               
               
               Cow position:chr2:52615407-52615847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:18-441
               
               
               Cow position:chr2:53328720-53329124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:18-441
               
               
               Cow position:chr2:59414727-59414304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:287
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):70, 295

               
               
               Conread position:19-241
               
               
               Cow position:chr2:176567-176330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):53, 201

               
               
               Conread position:19-402
               
               
               Cow position:chr2:44992316-44991943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):324, 78

               
               
               Conread position:19-441
               
               
               Cow position:chr2:782765-782360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:278
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):124, 55

               
               
               Conread position:19-441
               
               
               Cow position:chr2:26865602-26865167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 162

               
               
               Conread position:19-441
               
               
               Cow position:chr2:26920634-26921072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 178

               
               
               Conread position:19-441
               
               
               Cow position:chr2:47809991-47810387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:24-436
               
               
               Cow position:chr2:78741116-78741505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:35-429
               
               
               Cow position:chr2:44936091-44935721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:84-401
               
               
               Cow position:chr2:20904100-20903795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:86-441
               
               
               Cow position:chr2:11160105-11159751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:90-402
               
               
               Cow position:chr2:75676839-75676534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):22, 177

               
               
               Conread position:92-439
               
               
               Cow position:chr2:976241-975900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 76

               
               
               Conread position:98-396
               
               
               Cow position:chr2:80956608-80956312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):196, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr2:3325534-3325189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):74, 66

               
               
               Conread position:98-441
               
               
               Cow position:chr2:51991497-51991155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 68

               
               
               Conread position:98-441
               
               
               Cow position:chr2:57142654-57142311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:98-442
               
               
               Cow position:chr2:9906966-9907289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:99-441
               
               
               Cow position:chr2:38589219-38589552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:100-438
               
               
               Cow position:chr2:3748949-3749283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):11, 129

               
               
               Conread position:101-441
               
               
               Cow position:chr2:65939403-65939071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:103-439
               
               
               Cow position:chr2:5519952-5519614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):316, 0

               
               
               Conread position:107-441
               
               
               Cow position:chr2:24145322-24145651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 58

               
               
               Conread position:107-447
               
               
               Cow position:chr2:19009276-19009615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 28

               
               
               Conread position:108-441
               
               
               Cow position:chr2:27816819-27817152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:118-442
               
               
               Cow position:chr2:85356721-85356392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 306

               
               
               Conread position:121-301
               
               
               Cow position:chr2:7210486-7210666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:122-436
               
               
               Cow position:chr2:42334210-42333896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:123-441
               
               
               Cow position:chr2:5905791-5905472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 44

               
               
               Conread position:125-436
               
               
               Cow position:chr2:3729804-3730106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):295, 133

               
               
               Conread position:125-441
               
               
               Cow position:chr2:63293507-63293196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 26

               
               
               Conread position:125-441
               
               
               Cow position:chr2:75250842-75251132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:129-441
               
               
               Cow position:chr2:36990964-36991264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):291, 8

               
               
               Conread position:131-441
               
               
               Cow position:chr2:422130-422443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):38, 305

               
               
               Conread position:131-441
               
               
               Cow position:chr2:1491362-1491052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):24, 273

               
               
               Conread position:135-441
               
               
               Cow position:chr2:25889137-25888831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 262

               
               
               Conread position:135-441
               
               
               Cow position:chr2:51305826-51305532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:142-441
               
               
               Cow position:chr2:5871248-5870959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 9

               
               
               Conread position:151-439
               
               
               Cow position:chr2:283607-283319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 249

               
               
               Conread position:151-441
               
               
               Cow position:chr2:44345803-44346091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:160-432
               
               
               Cow position:chr2:82166715-82166990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):176, 19

               
               
               Conread position:160-441
               
               
               Cow position:chr2:72922731-72922456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):243, 27

               
               
               Conread position:167-441
               
               
               Cow position:chr2:52655575-52655845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 53

               
               
               Conread position:168-434
               
               
               Cow position:chr2:15578549-15578287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 38

               
               
               Conread position:168-436
               
               
               Cow position:chr2:41171800-41172060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):72, 21

               
               
               Conread position:172-436
               
               
               Cow position:chr2:52152746-52152480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:176-317
               
               
               Cow position:chr2:53474030-53473892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:176-436
               
               
               Cow position:chr2:16077182-16076929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):126, 35

               
               
               Conread position:182-396
               
               
               Cow position:chr2:28644272-28644052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):50, 136

               
               
               Conread position:191-399
               
               
               Cow position:chr2:5481508-5481300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:194-393
               
               
               Cow position:chr2:80516202-80516397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):107, 33

               
               
               Conread position:194-441
               
               
               Cow position:chr2:11969623-11969386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:195-430
               
               
               Cow position:chr2:43363834-43364065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 49

               
               
               Conread position:198-441
               
               
               Cow position:chr2:46945796-46946044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):54, 213

               
               
               Conread position:201-367
               
               
               Cow position:chr2:44166208-44166043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):97, 83

               
               
               Conread position:205-441
               
               
               Cow position:chr2:50076744-50076980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):194, 210

               
               
               Conread position:206-441
               
               
               Cow position:chr2:49471388-49471622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:211-441
               
               
               Cow position:chr2:6773015-6772787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:1-433
               
               
               Cow position:chr20:11276817-11276413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 82

               
               
               Conread position:1-441
               
               
               Cow position:chr20:18316120-18315694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):340, 34

               
               
               Conread position:2-441
               
               
               Cow position:chr20:3252663-3252243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:288
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):231, 82

               
               
               Conread position:8-441
               
               
               Cow position:chr20:27868671-27869087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:15-346
               
               
               Cow position:chr20:15291529-15291843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:15-402
               
               
               Cow position:chr20:8005032-8004663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-429
               
               
               Cow position:chr20:7116990-7116591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):389, 69

               
               
               Conread position:15-433
               
               
               Cow position:chr20:2791883-2791464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 106

               
               
               Conread position:15-441
               
               
               Cow position:chr20:5534428-5534829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr20:10103071-10102659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):364, 52

               
               
               Conread position:15-441
               
               
               Cow position:chr20:21913819-21914216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr20:23470180-23469769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):363, 55

               
               
               Conread position:15-441
               
               
               Cow position:chr20:23798357-23798772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr20:30683819-30684229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:16-441
               
               
               Cow position:chr20:28593218-28593638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):148, 83

               
               
               Conread position:18-330
               
               
               Cow position:chr20:35118735-35119026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:18-396
               
               
               Cow position:chr20:822207-822596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:272
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):69, 290

               
               
               Conread position:18-441
               
               
               Cow position:chr20:19437418-19437848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:19-441
               
               
               Cow position:chr20:21393051-21393460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 47

               
               
               Conread position:19-441
               
               
               Cow position:chr20:25851501-25851100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:28-441
               
               
               Cow position:chr20:15064242-15064659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 76

               
               
               Conread position:38-441
               
               
               Cow position:chr20:28160270-28160672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 80

               
               
               Conread position:44-362
               
               
               Cow position:chr20:13681581-13681280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):17, 31

               
               
               Conread position:73-430
               
               
               Cow position:chr20:2676647-2676996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):99, 26

               
               
               Conread position:85-420
               
               
               Cow position:chr20:29947720-29948056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 0

               
               
               Conread position:98-389
               
               
               Cow position:chr20:31123953-31124244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:99-435
               
               
               Cow position:chr20:22206083-22206433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 68

               
               
               Conread position:103-441
               
               
               Cow position:chr20:20905629-20905297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):16, 21

               
               
               Conread position:104-441
               
               
               Cow position:chr20:13762463-13762792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:110-435
               
               
               Cow position:chr20:29572626-29572303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 28

               
               
               Conread position:118-442
               
               
               Cow position:chr20:5483763-5484083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 42

               
               
               Conread position:141-441
               
               
               Cow position:chr20:12439169-12438871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:151-429
               
               
               Cow position:chr20:3032538-3032807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:172-452
               
               
               Cow position:chr20:10846454-10846177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:175-396
               
               
               Cow position:chr20:15098244-15098025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 122

               
               
               Conread position:176-441
               
               
               Cow position:chr20:4800019-4799761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:180-441
               
               
               Cow position:chr20:5561086-5560825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:188-321
               
               
               Cow position:chr20:19005989-19005859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:188-441
               
               
               Cow position:chr20:24614187-24614436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 0

               
               
               Conread position:190-429
               
               
               Cow position:chr20:3270362-3270589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:194-441
               
               
               Cow position:chr20:8313787-8313546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):200, 33

               
               
               Conread position:194-441
               
               
               Cow position:chr20:28565957-28565706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):205, 0

               
               
               Conread position:292-441
               
               
               Cow position:chr20:35119066-35119215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-322
               
               
               Cow position:chr21:41952763-41953073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 94

               
               
               Conread position:1-432
               
               
               Cow position:chr21:4183109-4183539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 158

               
               
               Conread position:2-434
               
               
               Cow position:chr21:358608-359019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 83

               
               
               Conread position:2-441
               
               
               Cow position:chr21:34259616-34259210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:2-441
               
               
               Cow position:chr21:35595976-35596377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:11-441
               
               
               Cow position:chr21:2415828-2416245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 61

               
               
               Conread position:11-441
               
               
               Cow position:chr21:2501531-2501943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 73

               
               
               Conread position:15-305
               
               
               Cow position:chr21:2542279-2541998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):280, 68

               
               
               Conread position:15-367
               
               
               Cow position:chr21:4590370-4590031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:15-396
               
               
               Cow position:chr21:5016460-5016064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:271
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):73, 149

               
               
               Conread position:15-429
               
               
               Cow position:chr21:7267939-7267544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:15-432
               
               
               Cow position:chr21:2884137-2883734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):376, 69

               
               
               Conread position:15-436
               
               
               Cow position:chr21:2530512-2530122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):292, 67

               
               
               Conread position:15-439
               
               
               Cow position:chr21:47947684-47948116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:293
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):78, 31

               
               
               Conread position:15-441
               
               
               Cow position:chr21:1292582-1292168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 64

               
               
               Conread position:15-441
               
               
               Cow position:chr21:2769859-2769452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):376, 79

               
               
               Conread position:15-441
               
               
               Cow position:chr21:10566278-10566683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 78

               
               
               Conread position:15-441
               
               
               Cow position:chr21:11505154-11505596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 391

               
               
               Conread position:15-441
               
               
               Cow position:chr21:31560048-31559645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):401, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr21:48115706-48116117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):384, 69

               
               
               Conread position:15-447
               
               
               Cow position:chr21:40272212-40271805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 69

               
               
               Conread position:18-326
               
               
               Cow position:chr21:19609685-19610010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:18-441
               
               
               Cow position:chr21:10849682-10850089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:18-441
               
               
               Cow position:chr21:26638887-26638454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 283

               
               
               Conread position:19-314
               
               
               Cow position:chr21:2454289-2454600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):69, 294

               
               
               Conread position:19-348
               
               
               Cow position:chr21:39580292-39580638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:19-402
               
               
               Cow position:chr21:47939093-47939450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 15

               
               
               Conread position:19-441
               
               
               Cow position:chr21:4090219-4090660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr21:12056420-12055991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 385

               
               
               Conread position:19-441
               
               
               Cow position:chr21:17572500-17572930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:289
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):68, 226

               
               
               Conread position:19-441
               
               
               Cow position:chr21:27708332-27708771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr21:33250998-33251401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 88

               
               
               Conread position:19-441
               
               
               Cow position:chr21:37044492-37044922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:289
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):68, 225

               
               
               Conread position:21-441
               
               
               Cow position:chr21:2510230-2510661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 223

               
               
               Conread position:73-441
               
               
               Cow position:chr21:2789345-2788982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):44, 105

               
               
               Conread position:91-441
               
               
               Cow position:chr21:11453994-11453647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):303, 0

               
               
               Conread position:97-441
               
               
               Cow position:chr21:39424734-39425072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):49, 195

               
               
               Conread position:98-441
               
               
               Cow position:chr21:2476841-2476501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):75, 68

               
               
               Conread position:98-441
               
               
               Cow position:chr21:26819347-26819012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr21:28529876-28529535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr21:46915258-46915596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 0

               
               
               Conread position:101-441
               
               
               Cow position:chr21:145590-145928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:103-402
               
               
               Cow position:chr21:4083325-4083620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:104-396
               
               
               Cow position:chr21:3778445-3778732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 62

               
               
               Conread position:104-441
               
               
               Cow position:chr21:1190714-1191051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:111-435
               
               
               Cow position:chr21:21516890-21517206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):16, 24

               
               
               Conread position:117-441
               
               
               Cow position:chr21:2716984-2716672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):20, 47

               
               
               Conread position:121-435
               
               
               Cow position:chr21:21948110-21947798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 86

               
               
               Conread position:128-303
               
               
               Cow position:chr21:35089399-35089574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:131-441
               
               
               Cow position:chr21:13124297-13123990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):56, 48

               
               
               Conread position:131-441
               
               
               Cow position:chr21:23860481-23860792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):20, 190

               
               
               Conread position:133-390
               
               
               Cow position:chr21:18692458-18692717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:133-441
               
               
               Cow position:chr21:34055213-34054905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):9, 111

               
               
               Conread position:134-441
               
               
               Cow position:chr21:3614993-3615301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 43

               
               
               Conread position:142-447
               
               
               Cow position:chr21:30600203-30599905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:168-441
               
               
               Cow position:chr21:4222960-4222678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):19, 91

               
               
               Conread position:175-330
               
               
               Cow position:chr21:23811656-23811808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:186-402
               
               
               Cow position:chr21:25992864-25992650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):127, 94

               
               
               Conread position:189-432
               
               
               Cow position:chr21:9891370-9891618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 77

               
               
               Conread position:189-441
               
               
               Cow position:chr21:6699804-6699547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):82, 221

               
               
               Conread position:190-435
               
               
               Cow position:chr21:21031498-21031739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:191-436
               
               
               Cow position:chr21:3426245-3426489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):121, 37

               
               
               Conread position:193-427
               
               
               Cow position:chr21:2674876-2674642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:193-436
               
               
               Cow position:chr21:34292780-34293022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 225

               
               
               Conread position:194-441
               
               
               Cow position:chr21:4076609-4076854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):112, 201

               
               
               Conread position:194-441
               
               
               Cow position:chr21:36714404-36714641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:196-441
               
               
               Cow position:chr21:30561566-30561811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-402
               
               
               Cow position:chr22:45880703-45880337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 14

               
               
               Conread position:1-429
               
               
               Cow position:chr22:3307310-3306908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:1-433
               
               
               Cow position:chr22:1321041-1321441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 70

               
               
               Conread position:2-432
               
               
               Cow position:chr22:36736194-36736605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):393, 93

               
               
               Conread position:2-444
               
               
               Cow position:chr22:36534542-36534124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 32

               
               
               Conread position:10-327
               
               
               Cow position:chr22:36180549-36180867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):87, 270

               
               
               Conread position:10-441
               
               
               Cow position:chr22:27310389-27309937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:11-441
               
               
               Cow position:chr22:5307506-5307954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 178

               
               
               Conread position:12-441
               
               
               Cow position:chr22:1285516-1285095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 37

               
               
               Conread position:15-284
               
               
               Cow position:chr22:27386964-27386707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:15-395
               
               
               Cow position:chr22:526483-526119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 90

               
               
               Conread position:15-398
               
               
               Cow position:chr22:44456739-44457107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 20

               
               
               Conread position:15-401
               
               
               Cow position:chr22:13772209-13772586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 80

               
               
               Conread position:15-429
               
               
               Cow position:chr22:15850759-15851159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 81

               
               
               Conread position:15-435
               
               
               Cow position:chr22:1294074-1293666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 68

               
               
               Conread position:15-439
               
               
               Cow position:chr22:19144271-19143865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr22:561272-560863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr22:17329310-17328903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr22:21588765-21589169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr22:31312771-31313177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr22:34167747-34168168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr22:37264847-37265290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 160

               
               
               Conread position:15-441
               
               
               Cow position:chr22:39470090-39469683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr22:42990603-42991008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr22:44933406-44933816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr22:46585893-46585475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:16-436
               
               
               Cow position:chr22:7276946-7277354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 6

               
               
               Conread position:17-442
               
               
               Cow position:chr22:39882735-39882339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:18-395
               
               
               Cow position:chr22:16199893-16200283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 252

               
               
               Conread position:18-439
               
               
               Cow position:chr22:44489292-44489721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 358

               
               
               Conread position:18-440
               
               
               Cow position:chr22:44370217-44369785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 293

               
               
               Conread position:18-441
               
               
               Cow position:chr22:693039-693468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 28

               
               
               Conread position:18-441
               
               
               Cow position:chr22:1878234-1878628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:279
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):123, 16

               
               
               Conread position:18-441
               
               
               Cow position:chr22:10910458-10910021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 363

               
               
               Conread position:18-441
               
               
               Cow position:chr22:24949226-24949666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:18-441
               
               
               Cow position:chr22:35672959-35672519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:19-433
               
               
               Cow position:chr22:37131087-37131479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:286
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):196, 77

               
               
               Conread position:19-439
               
               
               Cow position:chr22:6984652-6985089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr22:10546048-10546481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:290
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):74, 402

               
               
               Conread position:34-401
               
               
               Cow position:chr22:1271062-1270702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 12

               
               
               Conread position:35-432
               
               
               Cow position:chr22:37073712-37073335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):19, 62

               
               
               Conread position:38-304
               
               
               Cow position:chr22:48004107-48004367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):176, 45

               
               
               Conread position:39-436
               
               
               Cow position:chr22:6504209-6503839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:273
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:40-368
               
               
               Cow position:chr22:12732616-12732308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:73-441
               
               
               Cow position:chr22:37067452-37067078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:262
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):44, 128

               
               
               Conread position:83-396
               
               
               Cow position:chr22:327669-327356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 48

               
               
               Conread position:84-441
               
               
               Cow position:chr22:5933488-5933148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):223, 55

               
               
               Conread position:88-441
               
               
               Cow position:chr22:18476277-18475929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 0

               
               
               Conread position:90-441
               
               
               Cow position:chr22:8136710-8136360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:262
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:98-441
               
               
               Cow position:chr22:3278856-3278517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):240, 182

               
               
               Conread position:98-441
               
               
               Cow position:chr22:5233803-5233469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):182, 0

               
               
               Conread position:104-260
               
               
               Cow position:chr22:15314857-15314701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:113-441
               
               
               Cow position:chr22:31335522-31335197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:120-441
               
               
               Cow position:chr22:11030502-11030796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):276, 37

               
               
               Conread position:121-399
               
               
               Cow position:chr22:35943876-35943598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):60, 49

               
               
               Conread position:126-441
               
               
               Cow position:chr22:33350688-33351005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):6, 78

               
               
               Conread position:129-429
               
               
               Cow position:chr22:46636173-46635873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):15, 8

               
               
               Conread position:131-441
               
               
               Cow position:chr22:10077222-10076915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):49, 28

               
               
               Conread position:141-441
               
               
               Cow position:chr22:309261-309550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):200, 17

               
               
               Conread position:143-441
               
               
               Cow position:chr22:44395321-44395617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:150-441
               
               
               Cow position:chr22:44353402-44353111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 252

               
               
               Conread position:151-402
               
               
               Cow position:chr22:42771098-42771345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:151-436
               
               
               Cow position:chr22:1318944-1319228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 28

               
               
               Conread position:160-442
               
               
               Cow position:chr22:41420129-41419851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 227

               
               
               Conread position:163-336
               
               
               Cow position:chr22:40380758-40380930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):24, 16

               
               
               Conread position:168-429
               
               
               Cow position:chr22:118253-117993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 246

               
               
               Conread position:170-347
               
               
               Cow position:chr22:18930143-18930320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:176-441
               
               
               Cow position:chr22:5672310-5672573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):227, 237

               
               
               Conread position:176-441
               
               
               Cow position:chr22:46852914-46853178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):158, 205

               
               
               Conread position:189-441
               
               
               Cow position:chr22:36861946-36861694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:193-441
               
               
               Cow position:chr22:18816793-18816545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):197, 150

               
               
               Conread position:207-402
               
               
               Cow position:chr22:158312-158113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:214-441
               
               
               Cow position:chr22:32485718-32485500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:233-441
               
               
               Cow position:chr22:4065269-4065477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-441
               
               
               Cow position:chr23:1025640-1025223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):300, 48

               
               
               Conread position:2-192
               
               
               Cow position:chr23:8981394-8981211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:2-441
               
               
               Cow position:chr23:4276381-4276791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):393, 93

               
               
               Conread position:6-435
               
               
               Cow position:chr23:19332987-19332568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:268
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):307, 39

               
               
               Conread position:8-419
               
               
               Cow position:chr23:3013060-3013443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:287
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):291, 77

               
               
               Conread position:10-402
               
               
               Cow position:chr23:19449437-19449826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:256
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):185, 92

               
               
               Conread position:11-321
               
               
               Cow position:chr23:15176480-15176768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:11-441
               
               
               Cow position:chr23:4509520-4509937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 96

               
               
               Conread position:15-204
               
               
               Cow position:chr23:2573709-2573890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:15-395
               
               
               Cow position:chr23:14975368-14974978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 292

               
               
               Conread position:15-426
               
               
               Cow position:chr23:16617417-16617028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:273
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):26, 20

               
               
               Conread position:15-441
               
               
               Cow position:chr23:2027698-2027282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr23:2715765-2716188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr23:4641193-4640788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr23:15220466-15220061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr23:19488959-19489374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr23:19951191-19950747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr23:22147850-22147421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 100

               
               
               Conread position:15-441
               
               
               Cow position:chr23:27398933-27399340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr23:28912840-28913249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr23:36031943-36031535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 69

               
               
               Conread position:19-441
               
               
               Cow position:chr23:4433876-4434301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):68, 48

               
               
               Conread position:19-441
               
               
               Cow position:chr23:28216691-28217127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 205

               
               
               Conread position:20-433
               
               
               Cow position:chr23:1140992-1141386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):375, 63

               
               
               Conread position:22-441
               
               
               Cow position:chr23:4359238-4359666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:291
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):66, 201

               
               
               Conread position:24-330
               
               
               Cow position:chr23:2756932-2757227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):215, 77

               
               
               Conread position:88-452
               
               
               Cow position:chr23:20301695-20302057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 84

               
               
               Conread position:89-441
               
               
               Cow position:chr23:4815563-4815909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:101-393
               
               
               Cow position:chr23:14966477-14966184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 9

               
               
               Conread position:103-441
               
               
               Cow position:chr23:34174686-34175020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:104-441
               
               
               Cow position:chr23:11777986-11778322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 202

               
               
               Conread position:105-441
               
               
               Cow position:chr23:3882194-3881862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):295, 0

               
               
               Conread position:115-441
               
               
               Cow position:chr23:15525130-15525447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:116-436
               
               
               Cow position:chr23:31595678-31595346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 213

               
               
               Conread position:120-352
               
               
               Cow position:chr23:31652320-31652102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):220, 14

               
               
               Conread position:123-441
               
               
               Cow position:chr23:2796043-2795725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:125-436
               
               
               Cow position:chr23:2339927-2340236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):199, 155

               
               
               Conread position:128-400
               
               
               Cow position:chr23:22876104-22875836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):66, 95

               
               
               Conread position:131-441
               
               
               Cow position:chr23:2765844-2765542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):24, 196

               
               
               Conread position:150-441
               
               
               Cow position:chr23:31446361-31446651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:156-441
               
               
               Cow position:chr23:989091-988804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 180

               
               
               Conread position:162-435
               
               
               Cow position:chr23:5875211-5874945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 17

               
               
               Conread position:162-441
               
               
               Cow position:chr23:967790-967510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 0

               
               
               Conread position:168-441
               
               
               Cow position:chr23:7273225-7273492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 106

               
               
               Conread position:171-435
               
               
               Cow position:chr23:19017276-19017531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):109, 116

               
               
               Conread position:178-441
               
               
               Cow position:chr23:1330712-1330453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 0

               
               
               Conread position:188-441
               
               
               Cow position:chr23:5779502-5779248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:194-433
               
               
               Cow position:chr23:2574155-2574395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):107, 118

               
               
               Conread position:194-441
               
               
               Cow position:chr23:16481761-16481517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:200-441
               
               
               Cow position:chr23:30636706-30636465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:230-384
               
               
               Cow position:chr23:6469649-6469495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:237-436
               
               
               Cow position:chr23:8980856-8980661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:272-441
               
               
               Cow position:chr23:2313570-2313401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-403
               
               
               Cow position:chr24:37216217-37216610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1-441
               
               
               Cow position:chr24:14391228-14390803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:1-441
               
               
               Cow position:chr24:15392812-15392387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 95

               
               
               Conread position:2-441
               
               
               Cow position:chr24:12236551-12236976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):393, 93

               
               
               Conread position:2-441
               
               
               Cow position:chr24:12798259-12797842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:15-241
               
               
               Cow position:chr24:9544343-9544549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-379
               
               
               Cow position:chr24:29186317-29186666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-400
               
               
               Cow position:chr24:12289212-12288841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:15-401
               
               
               Cow position:chr24:39677954-39678314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:15-429
               
               
               Cow position:chr24:4416013-4415613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 59

               
               
               Conread position:15-432
               
               
               Cow position:chr24:149079-148687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-433
               
               
               Cow position:chr24:12161398-12161794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:287
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):304, 12

               
               
               Conread position:15-436
               
               
               Cow position:chr24:6335199-6335616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):369, 79

               
               
               Conread position:15-441
               
               
               Cow position:chr24:19832897-19833303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr24:33932862-33933288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 92

               
               
               Conread position:15-447
               
               
               Cow position:chr24:12131970-12131556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):73, 90

               
               
               Conread position:16-353
               
               
               Cow position:chr24:17314809-17314479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 79

               
               
               Conread position:17-433
               
               
               Cow position:chr24:16649800-16649385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 29

               
               
               Conread position:17-441
               
               
               Cow position:chr24:17187070-17187468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:18-424
               
               
               Cow position:chr24:12224973-12224575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:260
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):237, 65

               
               
               Conread position:18-441
               
               
               Cow position:chr24:6025614-6025173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:18-441
               
               
               Cow position:chr24:6644900-6645337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 393

               
               
               Conread position:18-441
               
               
               Cow position:chr24:33739860-33739422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 342

               
               
               Conread position:19-368
               
               
               Cow position:chr24:7712808-7712449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):69, 259

               
               
               Conread position:19-401
               
               
               Cow position:chr24:32125978-32125625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):367, 13

               
               
               Conread position:19-433
               
               
               Cow position:chr24:6144876-6145275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):412, 61

               
               
               Conread position:19-441
               
               
               Cow position:chr24:6433721-6434163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr24:9189247-9188809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 294

               
               
               Conread position:19-441
               
               
               Cow position:chr24:13021187-13021590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:283
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):188, 65

               
               
               Conread position:19-441
               
               
               Cow position:chr24:22792657-22793096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 172

               
               
               Conread position:74-441
               
               
               Cow position:chr24:12085759-12086120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 41

               
               
               Conread position:79-442
               
               
               Cow position:chr24:12207714-12208062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):55, 28

               
               
               Conread position:88-434
               
               
               Cow position:chr24:12114460-12114121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:88-441
               
               
               Cow position:chr24:16085104-16084738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):128, 18

               
               
               Conread position:91-400
               
               
               Cow position:chr24:36296742-36297051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):110, 19

               
               
               Conread position:97-441
               
               
               Cow position:chr24:6083595-6083939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:98-436
               
               
               Cow position:chr24:20267797-20268135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr24:44017125-44017468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 74

               
               
               Conread position:100-435
               
               
               Cow position:chr24:6057260-6057590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):12, 76

               
               
               Conread position:102-392
               
               
               Cow position:chr24:5993387-5993101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):140, 191

               
               
               Conread position:103-399
               
               
               Cow position:chr24:32330933-32331221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 20

               
               
               Conread position:104-441
               
               
               Cow position:chr24:14385023-14384691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:105-441
               
               
               Cow position:chr24:13181745-13181426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:110-441
               
               
               Cow position:chr24:35842005-35841690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):306, 11

               
               
               Conread position:122-435
               
               
               Cow position:chr24:6351796-6352112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):170, 285

               
               
               Conread position:128-441
               
               
               Cow position:chr24:35991038-35990739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):156, 22

               
               
               Conread position:130-403
               
               
               Cow position:chr24:36707471-36707741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):7, 130

               
               
               Conread position:168-443
               
               
               Cow position:chr24:37301425-37301157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):18, 143

               
               
               Conread position:176-402
               
               
               Cow position:chr24:6537228-6537444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:180-441
               
               
               Cow position:chr24:13187856-13188107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:186-441
               
               
               Cow position:chr24:12485650-12485395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:188-441
               
               
               Cow position:chr24:35838957-35838703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):132, 40

               
               
               Conread position:191-352
               
               
               Cow position:chr24:14583771-14583930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:194-441
               
               
               Cow position:chr24:36560396-36560161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:204-434
               
               
               Cow position:chr24:13531849-13531618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):107, 187

               
               
               Conread position:257-441
               
               
               Cow position:chr24:2635858-2636042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:257-441
               
               
               Cow position:chr24:8029889-8030073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-371
               
               
               Cow position:chr25:18172775-18173144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):27, 100

               
               
               Conread position:1-433
               
               
               Cow position:chr25:18276387-18275952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 83

               
               
               Conread position:12-436
               
               
               Cow position:chr25:11934076-11933651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 23

               
               
               Conread position:13-441
               
               
               Cow position:chr25:18092481-18092898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:15-372
               
               
               Cow position:chr25:34014875-34014536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:15-400
               
               
               Cow position:chr25:23346223-23345864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):267, 55

               
               
               Conread position:15-402
               
               
               Cow position:chr25:18302242-18302617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:15-441
               
               
               Cow position:chr25:13780507-13780910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr25:18890544-18890136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr25:34347520-34347113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:15-446
               
               
               Cow position:chr25:26278746-26279150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):397, 69

               
               
               Conread position:17-441
               
               
               Cow position:chr25:17469213-17468817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 17

               
               
               Conread position:18-426
               
               
               Cow position:chr25:26921670-26922095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:279
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:19-439
               
               
               Cow position:chr25:22146969-22147371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr25:8674403-8674794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr25:32579425-32579846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):103, 65

               
               
               Conread position:19-441
               
               
               Cow position:chr25:33991590-33991177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):103, 65

               
               
               Conread position:19-441
               
               
               Cow position:chr25:35362979-35362544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 400

               
               
               Conread position:20-441
               
               
               Cow position:chr25:14015631-14016051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 25

               
               
               Conread position:35-355
               
               
               Cow position:chr25:17561115-17560802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:88-451
               
               
               Cow position:chr25:19916615-19916972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):202, 0

               
               
               Conread position:93-398
               
               
               Cow position:chr25:20493897-20494198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):18, 7

               
               
               Conread position:97-396
               
               
               Cow position:chr25:17590008-17589714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 0

               
               
               Conread position:98-355
               
               
               Cow position:chr25:17563365-17563111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr25:20777362-20777018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 36

               
               
               Conread position:99-441
               
               
               Cow position:chr25:12760072-12759718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:100-435
               
               
               Cow position:chr25:19288807-19288478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:104-439
               
               
               Cow position:chr25:25506192-25506527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:121-427
               
               
               Cow position:chr25:18255795-18255483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):171, 66

               
               
               Conread position:122-441
               
               
               Cow position:chr25:26866783-26867104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:130-330
               
               
               Cow position:chr25:32979191-32978990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:131-436
               
               
               Cow position:chr25:18028062-18027755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):24, 179

               
               
               Conread position:149-441
               
               
               Cow position:chr25:18411694-18411408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 158

               
               
               Conread position:160-436
               
               
               Cow position:chr25:11375745-11375474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:176-428
               
               
               Cow position:chr25:18060979-18060720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):13, 5

               
               
               Conread position:186-432
               
               
               Cow position:chr25:21901706-21901956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):111, 165

               
               
               Conread position:186-441
               
               
               Cow position:chr25:20629201-20629456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:189-402
               
               
               Cow position:chr25:24171662-24171869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:203-422
               
               
               Cow position:chr25:12943796-12943578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):191, 0

               
               
               Conread position:206-441
               
               
               Cow position:chr25:34656801-34656566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-469
               
               
               Cow position:chr26:9846665-9846207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:4-441
               
               
               Cow position:chr26:9563878-9563458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:15-342
               
               
               Cow position:chr26:30590750-30590439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr26:17397446-17397030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 90

               
               
               Conread position:15-441
               
               
               Cow position:chr26:19352023-19351613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:16-441
               
               
               Cow position:chr26:9851154-9850724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:291
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):264, 65

               
               
               Conread position:16-441
               
               
               Cow position:chr26:9854618-9854190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):264, 65

               
               
               Conread position:18-441
               
               
               Cow position:chr26:2352885-2352458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 48

               
               
               Conread position:18-441
               
               
               Cow position:chr26:12589100-12588665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 160

               
               
               Conread position:18-441
               
               
               Cow position:chr26:30782229-30782665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 295

               
               
               Conread position:19-378
               
               
               Cow position:chr26:8918448-8918817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):69, 164

               
               
               Conread position:19-393
               
               
               Cow position:chr26:24201083-24201474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:19-396
               
               
               Cow position:chr26:19997948-19998342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:19-434
               
               
               Cow position:chr26:3031347-3030917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 347

               
               
               Conread position:19-441
               
               
               Cow position:chr26:11254599-11254157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 48

               
               
               Conread position:20-441
               
               
               Cow position:chr26:2198108-2198527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):126, 64

               
               
               Conread position:28-345
               
               
               Cow position:chr26:34012518-34012824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):280, 67

               
               
               Conread position:98-441
               
               
               Cow position:chr26:8869436-8869777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 57

               
               
               Conread position:98-441
               
               
               Cow position:chr26:9112023-9112366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:103-435
               
               
               Cow position:chr26:3074096-3074421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:116-333
               
               
               Cow position:chr26:35150296-35150080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):196, 76

               
               
               Conread position:118-393
               
               
               Cow position:chr26:12655537-12655798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:121-388
               
               
               Cow position:chr26:20262449-20262694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:134-438
               
               
               Cow position:chr26:4605590-4605284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:142-447
               
               
               Cow position:chr26:5674771-5675075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 79

               
               
               Conread position:166-436
               
               
               Cow position:chr26:20254701-20254965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:168-327
               
               
               Cow position:chr26:19142351-19142507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:168-400
               
               
               Cow position:chr26:8283414-8283182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:176-441
               
               
               Cow position:chr26:12574761-12574497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 229

               
               
               Conread position:176-441
               
               
               Cow position:chr26:23605274-23604998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):141, 82

               
               
               Conread position:179-441
               
               
               Cow position:chr26:6850536-6850274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:180-441
               
               
               Cow position:chr26:18854734-18854988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):62, 76

               
               
               Conread position:187-441
               
               
               Cow position:chr26:15145111-15144860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):240, 0

               
               
               Conread position:191-441
               
               
               Cow position:chr26:3691451-3691706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):114, 192

               
               
               Conread position:252-427
               
               
               Cow position:chr26:11537121-11536946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):106, 8

               
               
               Conread position:1-271
               
               
               Cow position:chr27:5985688-5985427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):38, 30

               
               
               Conread position:2-446
               
               
               Cow position:chr27:16438762-16439167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):436, 13

               
               
               Conread position:15-310
               
               
               Cow position:chr27:15639083-15638804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-345
               
               
               Cow position:chr27:11471965-11471652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):82, 92

               
               
               Conread position:15-441
               
               
               Cow position:chr27:892641-893046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr27:1208783-1209188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:15-441
               
               
               Cow position:chr27:5910296-5910703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr27:9993766-9993369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr27:14461029-14460620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr27:23334591-23335000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr27:25116673-25117080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):313, 85

               
               
               Conread position:15-441
               
               
               Cow position:chr27:26324242-26324651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:15-474
               
               
               Cow position:chr27:27662321-27662763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:16-441
               
               
               Cow position:chr27:25999627-25999222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:286
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):179, 85

               
               
               Conread position:18-428
               
               
               Cow position:chr27:25805448-25805057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 89

               
               
               Conread position:18-441
               
               
               Cow position:chr27:16034992-16034556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 332

               
               
               Conread position:19-441
               
               
               Cow position:chr27:2364141-2364588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr27:26556555-26556145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:98-439
               
               
               Cow position:chr27:15540825-15541163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:104-441
               
               
               Cow position:chr27:13897695-13898032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 228

               
               
               Conread position:131-374
               
               
               Cow position:chr27:16431999-16432242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):15, 36

               
               
               Conread position:134-436
               
               
               Cow position:chr27:27051186-27051496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:141-433
               
               
               Cow position:chr27:5906572-5906853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 83

               
               
               Conread position:165-330
               
               
               Cow position:chr27:23930583-23930417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:189-441
               
               
               Cow position:chr27:25002948-25002694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 155

               
               
               Conread position:202-441
               
               
               Cow position:chr27:15278467-15278226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 0

               
               
               Conread position:1-342
               
               
               Cow position:chr28:2990509-2990184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):266, 94

               
               
               Conread position:1-399
               
               
               Cow position:chr28:10619651-10619260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 100

               
               
               Conread position:1-402
               
               
               Cow position:chr28:5812161-5812552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 97

               
               
               Conread position:1-429
               
               
               Cow position:chr28:21325241-21325658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):418, 94

               
               
               Conread position:1-433
               
               
               Cow position:chr28:21358472-21358888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):430, 96

               
               
               Conread position:2-429
               
               
               Cow position:chr28:5796273-5796684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 96

               
               
               Conread position:11-441
               
               
               Cow position:chr28:2083071-2083485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:11-441
               
               
               Cow position:chr28:17387948-17388362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:15-274
               
               
               Cow position:chr28:12411047-12410781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):82, 159

               
               
               Conread position:15-302
               
               
               Cow position:chr28:5936493-5936762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-326
               
               
               Cow position:chr28:24667081-24667380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:15-330
               
               
               Cow position:chr28:1504112-1504411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-330
               
               
               Cow position:chr28:15378543-15378244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-342
               
               
               Cow position:chr28:5752689-5752378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 69

               
               
               Conread position:15-345
               
               
               Cow position:chr28:33251790-33252129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:15-389
               
               
               Cow position:chr28:5115601-5115251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:15-429
               
               
               Cow position:chr28:1387921-1387526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:15-429
               
               
               Cow position:chr28:26007506-26007898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:287
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):276, 68

               
               
               Conread position:15-433
               
               
               Cow position:chr28:10582510-10582112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):416, 69

               
               
               Conread position:15-434
               
               
               Cow position:chr28:8721991-8721570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 129

               
               
               Conread position:15-434
               
               
               Cow position:chr28:17668041-17667638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:15-437
               
               
               Cow position:chr28:22827526-22827929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:280
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr28:1168693-1168283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr28:3193304-3192910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):397, 73

               
               
               Conread position:15-441
               
               
               Cow position:chr28:7001473-7001869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr28:7816714-7817103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):421, 31

               
               
               Conread position:15-441
               
               
               Cow position:chr28:14706196-14705791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-447
               
               
               Cow position:chr28:781868-782282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 69

               
               
               Conread position:16-415
               
               
               Cow position:chr28:12149801-12150175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:17-362
               
               
               Cow position:chr28:7790766-7790437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:17-441
               
               
               Cow position:chr28:13522206-13522608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:18-330
               
               
               Cow position:chr28:15035942-15035646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:18-357
               
               
               Cow position:chr28:488931-489287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:245
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:19-393
               
               
               Cow position:chr28:1952584-1952966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):31, 191

               
               
               Conread position:19-441
               
               
               Cow position:chr28:5565336-5565742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr28:13441435-13440996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr28:13459449-13459852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr28:15950423-15950862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr28:18089531-18089123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:270
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):275, 79

               
               
               Conread position:19-441
               
               
               Cow position:chr28:26426786-26426393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:24-342
               
               
               Cow position:chr28:7739734-7740037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 60

               
               
               Conread position:27-441
               
               
               Cow position:chr28:18520978-18520580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:36-441
               
               
               Cow position:chr28:32792887-32792498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:88-441
               
               
               Cow position:chr28:6780799-6780448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:237
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):264, 228

               
               
               Conread position:98-441
               
               
               Cow position:chr28:14750085-14750429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:103-436
               
               
               Cow position:chr28:34648492-34648808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):198, 15

               
               
               Conread position:104-441
               
               
               Cow position:chr28:8378110-8378445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 291

               
               
               Conread position:104-441
               
               
               Cow position:chr28:15920915-15920585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):5, 15

               
               
               Conread position:104-441
               
               
               Cow position:chr28:22261607-22261270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):308, 296

               
               
               Conread position:104-441
               
               
               Cow position:chr28:29819115-29819451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:116-441
               
               
               Cow position:chr28:9155726-9155404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):24, 62

               
               
               Conread position:120-441
               
               
               Cow position:chr28:34593403-34593724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:122-426
               
               
               Cow position:chr28:18181782-18181490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:176-441
               
               
               Cow position:chr28:2591539-2591797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:176-441
               
               
               Cow position:chr28:9953751-9954017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 0

               
               
               Conread position:176-452
               
               
               Cow position:chr28:15681509-15681781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 0

               
               
               Conread position:194-342
               
               
               Cow position:chr28:9137394-9137246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):121, 126

               
               
               Conread position:204-441
               
               
               Cow position:chr28:1815223-1814987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:206-441
               
               
               Cow position:chr28:7901005-7901232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:223-441
               
               
               Cow position:chr28:24587099-24587314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):22, 71

               
               
               Conread position:235-400
               
               
               Cow position:chr28:14491140-14491303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:261-441
               
               
               Cow position:chr28:4381108-4380938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:1-217
               
               
               Cow position:chr29:45464354-45464148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):193, 84

               
               
               Conread position:1-304
               
               
               Cow position:chr29:8663697-8663987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:2-317
               
               
               Cow position:chr29:21431929-21431618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 41

               
               
               Conread position:2-441
               
               
               Cow position:chr29:10848671-10848264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:310
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):299, 93

               
               
               Conread position:2-441
               
               
               Cow position:chr29:11048715-11049129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):299, 86

               
               
               Conread position:4-439
               
               
               Cow position:chr29:40503553-40503134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:15-288
               
               
               Cow position:chr29:42649795-42650057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:15-288
               
               
               Cow position:chr29:42801655-42801917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-398
               
               
               Cow position:chr29:45587861-45587494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-433
               
               
               Cow position:chr29:45459161-45459556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):416, 69

               
               
               Conread position:15-439
               
               
               Cow position:chr29:10648808-10648403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr29:49039-48629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr29:2099283-2099691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr29:2689358-2689749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr29:2750946-2750545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr29:5957026-5957449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 119

               
               
               Conread position:15-441
               
               
               Cow position:chr29:6267056-6266647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr29:7431779-7431369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr29:19652545-19652955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr29:21246010-21246416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):401, 31

               
               
               Conread position:15-441
               
               
               Cow position:chr29:25933107-25932697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr29:26165381-26164976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr29:32539248-32539657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr29:35296302-35296721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):106, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr29:38226431-38226848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 70

               
               
               Conread position:15-441
               
               
               Cow position:chr29:39080269-39079859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr29:43321988-43322406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 47

               
               
               Conread position:15-447
               
               
               Cow position:chr29:20250596-20251012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:16-441
               
               
               Cow position:chr29:104021-104420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:286
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):178, 83

               
               
               Conread position:18-439
               
               
               Cow position:chr29:32315447-32315885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 292

               
               
               Conread position:18-441
               
               
               Cow position:chr29:611205-610765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 10

               
               
               Conread position:18-441
               
               
               Cow position:chr29:13577835-13578265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:298
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):70, 5

               
               
               Conread position:18-441
               
               
               Cow position:chr29:16109135-16109576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr29:16021974-16022376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):78, 121

               
               
               Conread position:19-441
               
               
               Cow position:chr29:19623802-19623400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr29:23975274-23975683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):380, 65

               
               
               Conread position:22-441
               
               
               Cow position:chr29:10824512-10824109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):318, 62

               
               
               Conread position:23-441
               
               
               Cow position:chr29:27250920-27250488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 157

               
               
               Conread position:98-340
               
               
               Cow position:chr29:18857282-18857040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr29:15895342-15895004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):74, 66

               
               
               Conread position:98-441
               
               
               Cow position:chr29:28061162-28060819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 161

               
               
               Conread position:107-441
               
               
               Cow position:chr29:2841852-2841522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 0

               
               
               Conread position:108-402
               
               
               Cow position:chr29:14368460-14368755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):99, 93

               
               
               Conread position:120-441
               
               
               Cow position:chr29:31121335-31121652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:122-436
               
               
               Cow position:chr29:4635432-4635125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):217, 49

               
               
               Conread position:128-441
               
               
               Cow position:chr29:12796932-12796619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 103

               
               
               Conread position:130-441
               
               
               Cow position:chr29:30811087-30811379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:131-433
               
               
               Cow position:chr29:9644183-9643884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):300, 11

               
               
               Conread position:141-399
               
               
               Cow position:chr29:32890755-32891020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:165-377
               
               
               Cow position:chr29:34752114-34751910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:166-441
               
               
               Cow position:chr29:34800230-34799963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:168-429
               
               
               Cow position:chr29:21543799-21543531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):19, 144

               
               
               Conread position:168-429
               
               
               Cow position:chr29:27041187-27040929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 235

               
               
               Conread position:181-402
               
               
               Cow position:chr29:14013059-14013280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):129, 147

               
               
               Conread position:181-402
               
               
               Cow position:chr29:14073354-14073131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):83, 149

               
               
               Conread position:186-441
               
               
               Cow position:chr29:43366399-43366150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:188-387
               
               
               Cow position:chr29:2468346-2468147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:188-441
               
               
               Cow position:chr29:16769730-16769979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:193-439
               
               
               Cow position:chr29:7840397-7840641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):97, 115

               
               
               Conread position:293-434
               
               
               Cow position:chr29:13853321-13853180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):137, 61

               
               
               Conread position:293-436
               
               
               Cow position:chr29:21427355-21427213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:1-309
               
               
               Cow position:chr3:17951006-17951301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):62, 45

               
               
               Conread position:1-327
               
               
               Cow position:chr3:18464417-18464099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:1-421
               
               
               Cow position:chr3:14634745-14634352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):340, 82

               
               
               Conread position:1-435
               
               
               Cow position:chr3:32843089-32842667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):50, 61

               
               
               Conread position:1-436
               
               
               Cow position:chr3:6684799-6685221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 33

               
               
               Conread position:1-440
               
               
               Cow position:chr3:52865416-52864985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1-441
               
               
               Cow position:chr3:19801760-19802188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 83

               
               
               Conread position:1-445
               
               
               Cow position:chr3:19692745-19692320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):195, 51

               
               
               Conread position:11-441
               
               
               Cow position:chr3:43040339-43039928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:11-441
               
               
               Cow position:chr3:72629423-72629833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:12-349
               
               
               Cow position:chr3:36099361-36099042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:15-298
               
               
               Cow position:chr3:75041791-75041523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):128, 69

               
               
               Conread position:15-316
               
               
               Cow position:chr3:53515089-53515373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:15-346
               
               
               Cow position:chr3:46502379-46502704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):82, 92

               
               
               Conread position:15-398
               
               
               Cow position:chr3:34031541-34031175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:15-429
               
               
               Cow position:chr3:2711601-2711205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:15-433
               
               
               Cow position:chr3:49677105-49677517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):416, 68

               
               
               Conread position:15-436
               
               
               Cow position:chr3:14440405-14439969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 293

               
               
               Conread position:15-439
               
               
               Cow position:chr3:38865762-38866164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:15-439
               
               
               Cow position:chr3:78028056-78027648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr3:2909727-2909329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr3:5882895-5883305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr3:5954813-5954422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:296
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):134, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr3:10239008-10239413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr3:18543077-18542643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 17

               
               
               Conread position:15-441
               
               
               Cow position:chr3:19938237-19938678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:15-441
               
               
               Cow position:chr3:23292049-23291640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr3:37968412-37968845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 390

               
               
               Conread position:15-441
               
               
               Cow position:chr3:42431578-42432000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 42

               
               
               Conread position:15-441
               
               
               Cow position:chr3:46678591-46678148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr3:50128520-50128114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 19

               
               
               Conread position:15-441
               
               
               Cow position:chr3:56341083-56340659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 395

               
               
               Conread position:15-441
               
               
               Cow position:chr3:57485367-57484959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr3:64018007-64017599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr3:69932756-69933162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):397, 69

               
               
               Conread position:15-442
               
               
               Cow position:chr3:3053965-3054375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:16-398
               
               
               Cow position:chr3:57500173-57499792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 102

               
               
               Conread position:17-441
               
               
               Cow position:chr3:64358814-64358401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:18-435
               
               
               Cow position:chr3:5996512-5996113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 66

               
               
               Conread position:18-441
               
               
               Cow position:chr3:3522339-3522779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 28

               
               
               Conread position:18-441
               
               
               Cow position:chr3:18810862-18811267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:18-441
               
               
               Cow position:chr3:32623678-32623247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 243

               
               
               Conread position:18-441
               
               
               Cow position:chr3:40340636-40340199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 393

               
               
               Conread position:18-441
               
               
               Cow position:chr3:46861974-46861533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:18-441
               
               
               Cow position:chr3:47082318-47081893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:295
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):80, 36

               
               
               Conread position:18-441
               
               
               Cow position:chr3:48061464-48061064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:18-441
               
               
               Cow position:chr3:64028758-64028321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 393

               
               
               Conread position:18-441
               
               
               Cow position:chr3:66891629-66891197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:292
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):70, 279

               
               
               Conread position:19-396
               
               
               Cow position:chr3:36116992-36117382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 275

               
               
               Conread position:19-400
               
               
               Cow position:chr3:39326058-39326414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:19-429
               
               
               Cow position:chr3:66618566-66618936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:283
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:19-436
               
               
               Cow position:chr3:15177676-15178070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):58, 81

               
               
               Conread position:19-441
               
               
               Cow position:chr3:2916795-2917227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):68, 237

               
               
               Conread position:19-441
               
               
               Cow position:chr3:22335226-22335657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 152

               
               
               Conread position:19-441
               
               
               Cow position:chr3:24313804-24314243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr3:49614646-49614212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 168

               
               
               Conread position:19-441
               
               
               Cow position:chr3:72704523-72704962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:20-441
               
               
               Cow position:chr3:64649951-64650396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 313

               
               
               Conread position:22-441
               
               
               Cow position:chr3:21183316-21182920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):318, 59

               
               
               Conread position:22-441
               
               
               Cow position:chr3:49545806-49545411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:28-400
               
               
               Cow position:chr3:3979752-3980113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 67

               
               
               Conread position:35-441
               
               
               Cow position:chr3:40822747-40823153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 104

               
               
               Conread position:39-441
               
               
               Cow position:chr3:63005773-63005384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):320, 58

               
               
               Conread position:77-441
               
               
               Cow position:chr3:36126807-36127156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:248
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):318, 36

               
               
               Conread position:84-432
               
               
               Cow position:chr3:594004-594348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 81

               
               
               Conread position:84-438
               
               
               Cow position:chr3:36882506-36882152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 314

               
               
               Conread position:85-441
               
               
               Cow position:chr3:45032151-45032506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:91-402
               
               
               Cow position:chr3:30929092-30929406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:98-321
               
               
               Cow position:chr3:7159359-7159137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):194, 59

               
               
               Conread position:98-393
               
               
               Cow position:chr3:32146661-32146368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr3:4285310-4285650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:231
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):69, 74

               
               
               Conread position:98-441
               
               
               Cow position:chr3:15989606-15989271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):104, 188

               
               
               Conread position:98-441
               
               
               Cow position:chr3:17829225-17828885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 0

               
               
               Conread position:102-368
               
               
               Cow position:chr3:24359687-24359953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:102-441
               
               
               Cow position:chr3:19878090-19878427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 55

               
               
               Conread position:102-441
               
               
               Cow position:chr3:57856162-57856501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:103-432
               
               
               Cow position:chr3:24592185-24591856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 222

               
               
               Conread position:103-441
               
               
               Cow position:chr3:56650838-56650504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 276

               
               
               Conread position:104-441
               
               
               Cow position:chr3:30313988-30314321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):298, 0

               
               
               Conread position:104-441
               
               
               Cow position:chr3:59860793-59861130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:107-400
               
               
               Cow position:chr3:18357440-18357155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):36, 69

               
               
               Conread position:107-432
               
               
               Cow position:chr3:47273535-47273211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):308, 287

               
               
               Conread position:115-433
               
               
               Cow position:chr3:78018934-78019252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:116-436
               
               
               Cow position:chr3:9716244-9716570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 312

               
               
               Conread position:120-401
               
               
               Cow position:chr3:48231524-48231257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:120-441
               
               
               Cow position:chr3:41212294-41211973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 14

               
               
               Conread position:121-435
               
               
               Cow position:chr3:18729698-18729373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):173, 119

               
               
               Conread position:122-435
               
               
               Cow position:chr3:49140958-49140651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 46

               
               
               Conread position:123-437
               
               
               Cow position:chr3:5830169-5829868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:130-435
               
               
               Cow position:chr3:17936610-17936305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 47

               
               
               Conread position:131-402
               
               
               Cow position:chr3:31898517-31898246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):34, 115

               
               
               Conread position:131-429
               
               
               Cow position:chr3:13513746-13513452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):33, 27

               
               
               Conread position:131-441
               
               
               Cow position:chr3:42580513-42580200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:132-441
               
               
               Cow position:chr3:77474217-77474525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 110

               
               
               Conread position:133-441
               
               
               Cow position:chr3:66119108-66119421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):21, 61

               
               
               Conread position:134-435
               
               
               Cow position:chr3:60387833-60388139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):68, 153

               
               
               Conread position:139-406
               
               
               Cow position:chr3:45775604-45775339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:141-377
               
               
               Cow position:chr3:83700672-83700445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:142-441
               
               
               Cow position:chr3:6781856-6782152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 261

               
               
               Conread position:142-441
               
               
               Cow position:chr3:21945942-21945640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:151-441
               
               
               Cow position:chr3:34396573-34396288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):7, 34

               
               
               Conread position:162-441
               
               
               Cow position:chr3:70084148-70083881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):239, 17

               
               
               Conread position:162-447
               
               
               Cow position:chr3:36691705-36691422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 173

               
               
               Conread position:168-341
               
               
               Cow position:chr3:66637537-66637711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:172-441
               
               
               Cow position:chr3:2633422-2633693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:176-441
               
               
               Cow position:chr3:31354752-31354492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:184-441
               
               
               Cow position:chr3:207652-207395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:187-433
               
               
               Cow position:chr3:19943590-19943822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):204, 114

               
               
               Conread position:189-396
               
               
               Cow position:chr3:56320825-56321030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:189-441
               
               
               Cow position:chr3:2653634-2653872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:194-441
               
               
               Cow position:chr3:5047666-5047419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 127

               
               
               Conread position:194-441
               
               
               Cow position:chr3:19757442-19757195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:194-441
               
               
               Cow position:chr3:55230187-55229929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):118, 46

               
               
               Conread position:198-441
               
               
               Cow position:chr3:47179682-47179439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:201-441
               
               
               Cow position:chr3:14588213-14588447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:205-441
               
               
               Cow position:chr3:54865152-54864934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:236-441
               
               
               Cow position:chr3:7168164-7168368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:247-433
               
               
               Cow position:chr3:50914881-50915063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):134, 52

               
               
               Conread position:255-441
               
               
               Cow position:chr3:26949095-26949279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 15

               
               
               Conread position:269-433
               
               
               Cow position:chr3:58947050-58947213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):162, 105

               
               
               Conread position:272-396
               
               
               Cow position:chr3:7159147-7159023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-441
               
               
               Cow position:chr4:66925162-66925574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):406, 86

               
               
               Conread position:2-447
               
               
               Cow position:chr4:21338841-21338413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:11-441
               
               
               Cow position:chr4:16359061-16359456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:11-441
               
               
               Cow position:chr4:29532559-29532145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:15-331
               
               
               Cow position:chr4:54955110-54955432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):67, 52

               
               
               Conread position:15-429
               
               
               Cow position:chr4:13491732-13492133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 69

               
               
               Conread position:15-440
               
               
               Cow position:chr4:18516048-18516464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 65

               
               
               Conread position:15-440
               
               
               Cow position:chr4:43320477-43320068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-440
               
               
               Cow position:chr4:46713173-46712773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr4:355075-355480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr4:3960755-3961161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 67

               
               
               Conread position:15-441
               
               
               Cow position:chr4:25600441-25600043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):305, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr4:33492970-33493381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):321, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr4:36895533-36895943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr4:41330599-41331010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):393, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr4:43880270-43880678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr4:45050136-45049730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr4:48025565-48025971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:16-441
               
               
               Cow position:chr4:28830202-28830609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):343, 43

               
               
               Conread position:18-399
               
               
               Cow position:chr4:5879317-5879706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:267
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):70, 6

               
               
               Conread position:18-439
               
               
               Cow position:chr4:4905317-4905721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):292, 64

               
               
               Conread position:18-441
               
               
               Cow position:chr4:101799-101360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 208

               
               
               Conread position:18-441
               
               
               Cow position:chr4:528124-528562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 154

               
               
               Conread position:18-441
               
               
               Cow position:chr4:1050460-1050051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 77

               
               
               Conread position:18-441
               
               
               Cow position:chr4:3124911-3125350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 56

               
               
               Conread position:18-441
               
               
               Cow position:chr4:6269492-6269059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 289

               
               
               Conread position:18-441
               
               
               Cow position:chr4:24446036-24445630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):314, 66

               
               
               Conread position:18-441
               
               
               Cow position:chr4:30308304-30307885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:287
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):62, 183

               
               
               Conread position:19-441
               
               
               Cow position:chr4:157660-158084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):73, 134

               
               
               Conread position:19-441
               
               
               Cow position:chr4:6491182-6490777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr4:46663361-46663771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 62

               
               
               Conread position:19-441
               
               
               Cow position:chr4:47765040-47764601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:24-436
               
               
               Cow position:chr4:10407929-10408345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):56, 130

               
               
               Conread position:28-441
               
               
               Cow position:chr4:44724258-44724652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:35-435
               
               
               Cow position:chr4:39272749-39272377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):129, 66

               
               
               Conread position:35-441
               
               
               Cow position:chr4:1931474-1931051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:89-402
               
               
               Cow position:chr4:33074165-33073855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:97-441
               
               
               Cow position:chr4:9311463-9311806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 61

               
               
               Conread position:98-393
               
               
               Cow position:chr4:41954021-41954315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 0

               
               
               Conread position:98-440
               
               
               Cow position:chr4:16055820-16056172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):224, 309

               
               
               Conread position:98-441
               
               
               Cow position:chr4:13547250-13547597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr4:23114949-23114607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr4:65224308-65223965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:102-441
               
               
               Cow position:chr4:602227-602563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):292, 0

               
               
               Conread position:104-386
               
               
               Cow position:chr4:3357956-3358239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:107-393
               
               
               Cow position:chr4:41118362-41118650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 0

               
               
               Conread position:122-402
               
               
               Cow position:chr4:6215295-6215021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):230, 77

               
               
               Conread position:122-434
               
               
               Cow position:chr4:8598877-8598576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:122-441
               
               
               Cow position:chr4:40825000-40824675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):37, 289

               
               
               Conread position:123-398
               
               
               Cow position:chr4:1464664-1464394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):20, 43

               
               
               Conread position:125-403
               
               
               Cow position:chr4:41427877-41428154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 106

               
               
               Conread position:126-436
               
               
               Cow position:chr4:11394067-11393772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:131-402
               
               
               Cow position:chr4:6449624-6449357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):97, 29

               
               
               Conread position:131-435
               
               
               Cow position:chr4:60673167-60673464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:145-386
               
               
               Cow position:chr4:57978690-57978931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:151-401
               
               
               Cow position:chr4:54190158-54190390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:155-447
               
               
               Cow position:chr4:12241938-12241644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:160-441
               
               
               Cow position:chr4:17926966-17926685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):239, 260

               
               
               Conread position:166-441
               
               
               Cow position:chr4:31668611-31668883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:176-420
               
               
               Cow position:chr4:64982731-64982968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:176-441
               
               
               Cow position:chr4:47718286-47718038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):243, 87

               
               
               Conread position:181-398
               
               
               Cow position:chr4:11617747-11617971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:206-429
               
               
               Cow position:chr4:27442433-27442647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):188, 17

               
               
               Conread position:213-372
               
               
               Cow position:chr4:60265446-60265291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):88, 69

               
               
               Conread position:252-441
               
               
               Cow position:chr4:32211546-32211736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:303-441
               
               
               Cow position:chr4:66179554-66179419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:1-401
               
               
               Cow position:chr5:32674501-32674112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 157

               
               
               Conread position:1-432
               
               
               Cow position:chr5:61273929-61273510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 94

               
               
               Conread position:1-434
               
               
               Cow position:chr5:12682263-12681846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):394, 94

               
               
               Conread position:1-441
               
               
               Cow position:chr5:23716712-23716287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):392, 61

               
               
               Conread position:2-192
               
               
               Cow position:chr5:27652711-27652525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:2-399
               
               
               Cow position:chr5:34167305-34167691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 133

               
               
               Conread position:2-439
               
               
               Cow position:chr5:26769063-26769472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 93

               
               
               Conread position:2-441
               
               
               Cow position:chr5:34202204-34202610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):341, 33

               
               
               Conread position:3-400
               
               
               Cow position:chr5:41963688-41963307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):384, 92

               
               
               Conread position:7-441
               
               
               Cow position:chr5:58747136-58747548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 28

               
               
               Conread position:11-441
               
               
               Cow position:chr5:7273117-7273525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):384, 56

               
               
               Conread position:11-442
               
               
               Cow position:chr5:4068240-4068655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:15-286
               
               
               Cow position:chr5:29456876-29457132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):164, 68

               
               
               Conread position:15-317
               
               
               Cow position:chr5:46006179-46005890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):286, 34

               
               
               Conread position:15-398
               
               
               Cow position:chr5:4384480-4384850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:15-400
               
               
               Cow position:chr5:10443981-10443580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:273
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):73, 332

               
               
               Conread position:15-402
               
               
               Cow position:chr5:27000458-27000822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:265
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:15-402
               
               
               Cow position:chr5:46658955-46659348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 37

               
               
               Conread position:15-426
               
               
               Cow position:chr5:46663226-46663650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 309

               
               
               Conread position:15-439
               
               
               Cow position:chr5:46739347-46738923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 235

               
               
               Conread position:15-440
               
               
               Cow position:chr5:4019977-4019536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 207

               
               
               Conread position:15-441
               
               
               Cow position:chr5:416466-416059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr5:1342541-1342130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):397, 34

               
               
               Conread position:15-441
               
               
               Cow position:chr5:2430878-2430469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr5:2913705-2914114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr5:3504987-3504583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr5:10918058-10918461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr5:27488279-27488683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):216, 91

               
               
               Conread position:15-441
               
               
               Cow position:chr5:34695840-34696248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):401, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr5:37731599-37732009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr5:41530318-41529908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 21

               
               
               Conread position:15-441
               
               
               Cow position:chr5:49120022-49119618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr5:55627259-55627665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-447
               
               
               Cow position:chr5:6158938-6158527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:15-447
               
               
               Cow position:chr5:64782761-64782347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:17-307
               
               
               Cow position:chr5:27060823-27060545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):285, 78

               
               
               Conread position:18-400
               
               
               Cow position:chr5:46643938-46644332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):83, 163

               
               
               Conread position:18-441
               
               
               Cow position:chr5:2530500-2530934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 199

               
               
               Conread position:18-441
               
               
               Cow position:chr5:10777020-10776589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 134

               
               
               Conread position:18-441
               
               
               Cow position:chr5:10844649-10844211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 154

               
               
               Conread position:18-441
               
               
               Cow position:chr5:27910045-27909607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 394

               
               
               Conread position:18-441
               
               
               Cow position:chr5:32771706-32772145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 208

               
               
               Conread position:18-441
               
               
               Cow position:chr5:46775316-46775752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 277

               
               
               Conread position:18-441
               
               
               Cow position:chr5:47831869-47831441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 133

               
               
               Conread position:18-441
               
               
               Cow position:chr5:58195226-58195666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 264

               
               
               Conread position:18-441
               
               
               Cow position:chr5:59282019-59282426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:19-389
               
               
               Cow position:chr5:42503989-42504367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):94, 163

               
               
               Conread position:19-429
               
               
               Cow position:chr5:54793360-54792966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:19-436
               
               
               Cow position:chr5:23960883-23960451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 415

               
               
               Conread position:19-440
               
               
               Cow position:chr5:59144004-59144444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:19-440
               
               
               Cow position:chr5:59481476-59481917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 339

               
               
               Conread position:19-441
               
               
               Cow position:chr5:3785069-3785472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr5:30578584-30578986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr5:31705802-31706238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 269

               
               
               Conread position:19-441
               
               
               Cow position:chr5:37755914-37755475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr5:53714481-53714917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 170

               
               
               Conread position:20-379
               
               
               Cow position:chr5:23688220-23687868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 54

               
               
               Conread position:28-436
               
               
               Cow position:chr5:6519162-6519545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:34-441
               
               
               Cow position:chr5:46631138-46630761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:279
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):378, 49

               
               
               Conread position:35-441
               
               
               Cow position:chr5:24097924-24098312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 49

               
               
               Conread position:38-402
               
               
               Cow position:chr5:49594186-49593834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:90-441
               
               
               Cow position:chr5:30088395-30088057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):22, 155

               
               
               Conread position:92-441
               
               
               Cow position:chr5:48809397-48809052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 68

               
               
               Conread position:97-441
               
               
               Cow position:chr5:24576234-24576577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 61

               
               
               Conread position:98-432
               
               
               Cow position:chr5:45182771-45182440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):297, 61

               
               
               Conread position:98-436
               
               
               Cow position:chr5:18663568-18663906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr5:3963800-3964134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr5:14379489-14379826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):61, 193

               
               
               Conread position:98-441
               
               
               Cow position:chr5:26079897-26079555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr5:48468951-48468613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr5:59059939-59060284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:237
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):50, 302

               
               
               Conread position:100-432
               
               
               Cow position:chr5:56858380-56858041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):11, 197

               
               
               Conread position:101-330
               
               
               Cow position:chr5:73490001-73489773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:102-433
               
               
               Cow position:chr5:32945204-32945537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 33

               
               
               Conread position:103-441
               
               
               Cow position:chr5:23227584-23227922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):9, 63

               
               
               Conread position:113-326
               
               
               Cow position:chr5:29437620-29437410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):130, 51

               
               
               Conread position:113-441
               
               
               Cow position:chr5:57483212-57482883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 10

               
               
               Conread position:122-429
               
               
               Cow position:chr5:76124200-76123899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):135, 35

               
               
               Conread position:128-432
               
               
               Cow position:chr5:58061468-58061167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):65, 26

               
               
               Conread position:132-436
               
               
               Cow position:chr5:26090476-26090167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):35, 121

               
               
               Conread position:141-441
               
               
               Cow position:chr5:35299427-35299727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:151-441
               
               
               Cow position:chr5:24329671-24329962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 12

               
               
               Conread position:151-441
               
               
               Cow position:chr5:28030871-28031148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:161-441
               
               
               Cow position:chr5:28570073-28570361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 140

               
               
               Conread position:163-400
               
               
               Cow position:chr5:49181672-49181904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:168-402
               
               
               Cow position:chr5:54619863-54620092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):26, 117

               
               
               Conread position:168-435
               
               
               Cow position:chr5:68472171-68471905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):130, 104

               
               
               Conread position:168-436
               
               
               Cow position:chr5:29008751-29009018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):21, 149

               
               
               Conread position:170-441
               
               
               Cow position:chr5:18665354-18665625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:176-436
               
               
               Cow position:chr5:39165399-39165139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 243

               
               
               Conread position:176-441
               
               
               Cow position:chr5:9687008-9686750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 117

               
               
               Conread position:176-441
               
               
               Cow position:chr5:45699680-45699948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 39

               
               
               Conread position:176-441
               
               
               Cow position:chr5:52804733-52805000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 0

               
               
               Conread position:193-441
               
               
               Cow position:chr5:41551506-41551261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:194-402
               
               
               Cow position:chr5:29454445-29454239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:194-441
               
               
               Cow position:chr5:32733826-32733581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:195-441
               
               
               Cow position:chr5:12644457-12644210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):58, 210

               
               
               Conread position:210-441
               
               
               Cow position:chr5:12185093-12185324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:217-441
               
               
               Cow position:chr5:31102153-31101933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:252-441
               
               
               Cow position:chr5:54932743-54932554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:256-434
               
               
               Cow position:chr5:27652506-27652338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:283-441
               
               
               Cow position:chr5:27569662-27569814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:286-441
               
               
               Cow position:chr5:29042020-29042175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:291-441
               
               
               Cow position:chr5:44458996-44459146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-396
               
               
               Cow position:chr6:66231199-66231574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:2-436
               
               
               Cow position:chr6:19453325-19453723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:2-441
               
               
               Cow position:chr6:11278312-11277895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:11-400
               
               
               Cow position:chr6:33458959-33459351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:270
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):92, 48

               
               
               Conread position:11-436
               
               
               Cow position:chr6:43795332-43794908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:283
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):120, 139

               
               
               Conread position:15-317
               
               
               Cow position:chr6:40555214-40554933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-330
               
               
               Cow position:chr6:13318289-13317992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):127, 69

               
               
               Conread position:15-381
               
               
               Cow position:chr6:52735791-52736147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:15-386
               
               
               Cow position:chr6:3890091-3889738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:15-398
               
               
               Cow position:chr6:40314276-40314665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:272
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):24, 193

               
               
               Conread position:15-433
               
               
               Cow position:chr6:24238447-24238846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):416, 69

               
               
               Conread position:15-433
               
               
               Cow position:chr6:27468663-27469053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):380, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr6:913027-913434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr6:3278554-3278145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr6:3488996-3488595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr6:5951839-5951431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr6:7142101-7141666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 190

               
               
               Conread position:15-441
               
               
               Cow position:chr6:8201128-8201538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr6:15141774-15141370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):380, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr6:15281147-15280736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):397, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr6:17598917-17598474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 399

               
               
               Conread position:15-441
               
               
               Cow position:chr6:21971073-21971479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr6:27530599-27530197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr6:28274388-28274789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr6:34893611-34893204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr6:35877320-35876913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 57

               
               
               Conread position:15-441
               
               
               Cow position:chr6:36525441-36525848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr6:39437034-39437446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr6:47044028-47043626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr6:65880256-65880672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 90

               
               
               Conread position:15-441
               
               
               Cow position:chr6:65908796-65909232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 322

               
               
               Conread position:16-394
               
               
               Cow position:chr6:65900519-65900151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):324, 48

               
               
               Conread position:16-436
               
               
               Cow position:chr6:38231665-38232076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):351, 82

               
               
               Conread position:18-402
               
               
               Cow position:chr6:21686301-21686661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:18-435
               
               
               Cow position:chr6:13103426-13103858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 14

               
               
               Conread position:18-441
               
               
               Cow position:chr6:332113-331660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:18-441
               
               
               Cow position:chr6:2554077-2554513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 167

               
               
               Conread position:18-441
               
               
               Cow position:chr6:26671499-26671058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):70, 299

               
               
               Conread position:18-441
               
               
               Cow position:chr6:28062718-28063143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):80, 10

               
               
               Conread position:18-441
               
               
               Cow position:chr6:39907522-39907955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 289

               
               
               Conread position:18-441
               
               
               Cow position:chr6:44151176-44150752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:298
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):66, 228

               
               
               Conread position:18-441
               
               
               Cow position:chr6:68026148-68026587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 25

               
               
               Conread position:19-436
               
               
               Cow position:chr6:6935758-6935324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr6:2374077-2374509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 314

               
               
               Conread position:19-441
               
               
               Cow position:chr6:6477061-6476648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):393, 16

               
               
               Conread position:19-441
               
               
               Cow position:chr6:13977909-13978328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:274
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):103, 65

               
               
               Conread position:19-441
               
               
               Cow position:chr6:27168943-27169382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr6:40274625-40275064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 295

               
               
               Conread position:19-441
               
               
               Cow position:chr6:50498049-50497653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr6:55544927-55544521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:20-440
               
               
               Cow position:chr6:43617082-43617521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 250

               
               
               Conread position:20-441
               
               
               Cow position:chr6:57870636-57870198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:25-346
               
               
               Cow position:chr6:2111547-2111246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:25-401
               
               
               Cow position:chr6:12093456-12093091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:35-433
               
               
               Cow position:chr6:30478503-30478890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):396, 63

               
               
               Conread position:73-377
               
               
               Cow position:chr6:21836676-21836358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):26, 217

               
               
               Conread position:84-398
               
               
               Cow position:chr6:52068-51754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:85-440
               
               
               Cow position:chr6:701403-701758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:89-441
               
               
               Cow position:chr6:65841043-65841400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:90-432
               
               
               Cow position:chr6:7180205-7179868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):22, 68

               
               
               Conread position:94-400
               
               
               Cow position:chr6:63198668-63198375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:94-435
               
               
               Cow position:chr6:51190006-51190339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 143

               
               
               Conread position:98-435
               
               
               Cow position:chr6:41757521-41757186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr6:28492048-28491708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr6:34126814-34127154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):329, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr6:44028520-44028853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr6:45671732-45672070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 0

               
               
               Conread position:102-441
               
               
               Cow position:chr6:1405760-1405431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:103-402
               
               
               Cow position:chr6:25357138-25357439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):60, 219

               
               
               Conread position:104-275
               
               
               Cow position:chr6:476563-476734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:105-398
               
               
               Cow position:chr6:64713019-64713311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 75

               
               
               Conread position:105-441
               
               
               Cow position:chr6:64714586-64714921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 75

               
               
               Conread position:107-436
               
               
               Cow position:chr6:65822660-65822326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):183, 107

               
               
               Conread position:107-441
               
               
               Cow position:chr6:1823774-1823444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 0

               
               
               Conread position:108-441
               
               
               Cow position:chr6:68362850-68362514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 264

               
               
               Conread position:109-432
               
               
               Cow position:chr6:39161688-39162011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):290, 59

               
               
               Conread position:111-441
               
               
               Cow position:chr6:20561633-20561304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 0

               
               
               Conread position:116-327
               
               
               Cow position:chr6:10640282-10640482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:116-441
               
               
               Cow position:chr6:59919793-59919473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):21, 69

               
               
               Conread position:120-397
               
               
               Cow position:chr6:30275690-30275421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:120-439
               
               
               Cow position:chr6:13943398-13943715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):181, 271

               
               
               Conread position:121-438
               
               
               Cow position:chr6:52803907-52804218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 162

               
               
               Conread position:122-422
               
               
               Cow position:chr6:66194486-66194194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:122-433
               
               
               Cow position:chr6:1384355-1384047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):274, 194

               
               
               Conread position:128-402
               
               
               Cow position:chr6:10054122-10054381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):179, 26

               
               
               Conread position:129-441
               
               
               Cow position:chr6:2885740-2886028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:131-342
               
               
               Cow position:chr6:13276056-13276267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):170, 41

               
               
               Conread position:131-436
               
               
               Cow position:chr6:2401735-2402050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):24, 215

               
               
               Conread position:132-441
               
               
               Cow position:chr6:6566108-6566418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:140-387
               
               
               Cow position:chr6:28106256-28106016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:142-441
               
               
               Cow position:chr6:17045570-17045867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 253

               
               
               Conread position:142-441
               
               
               Cow position:chr6:29311001-29311296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 235

               
               
               Conread position:163-403
               
               
               Cow position:chr6:65007373-65007611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):154, 64

               
               
               Conread position:173-441
               
               
               Cow position:chr6:42723382-42723119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:178-441
               
               
               Cow position:chr6:65927488-65927742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:187-431
               
               
               Cow position:chr6:58409356-58409113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):241, 103

               
               
               Conread position:191-441
               
               
               Cow position:chr6:42926936-42927190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):123, 232

               
               
               Conread position:194-427
               
               
               Cow position:chr6:10559079-10558849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):201, 49

               
               
               Conread position:195-441
               
               
               Cow position:chr6:8761741-8761495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:300-402
               
               
               Cow position:chr6:37115803-37115905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):95, 15

               
               
               Conread position:1-426
               
               
               Cow position:chr7:1448963-1449375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 43

               
               
               Conread position:1-433
               
               
               Cow position:chr7:3154249-3154671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):402, 93

               
               
               Conread position:1-441
               
               
               Cow position:chr7:1358193-1357774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 96

               
               
               Conread position:3-400
               
               
               Cow position:chr7:1736700-1736324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:263
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):301, 14

               
               
               Conread position:10-441
               
               
               Cow position:chr7:34485392-34485807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):420, 48

               
               
               Conread position:11-441
               
               
               Cow position:chr7:21984881-21985294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:12-441
               
               
               Cow position:chr7:48632883-48633295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:15-210
               
               
               Cow position:chr7:41489630-41489822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):170, 68

               
               
               Conread position:15-265
               
               
               Cow position:chr7:10431901-10431666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):200, 69

               
               
               Conread position:15-302
               
               
               Cow position:chr7:67425863-67426142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:15-309
               
               
               Cow position:chr7:68779372-68779092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):288, 76

               
               
               Conread position:15-347
               
               
               Cow position:chr7:21242621-21242300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):327, 68

               
               
               Conread position:15-354
               
               
               Cow position:chr7:27143821-27144144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 69

               
               
               Conread position:15-375
               
               
               Cow position:chr7:47049914-47050250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:15-394
               
               
               Cow position:chr7:34148594-34148958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:15-399
               
               
               Cow position:chr7:27786118-27786485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-401
               
               
               Cow position:chr7:20429525-20429157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:15-429
               
               
               Cow position:chr7:38396712-38397111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 69

               
               
               Conread position:15-432
               
               
               Cow position:chr7:53014981-53015385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):187, 83

               
               
               Conread position:15-441
               
               
               Cow position:chr7:1373163-1372757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr7:8145752-8145343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):393, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr7:14140107-14139701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr7:21235525-21235116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr7:24808982-24808572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):355, 67

               
               
               Conread position:15-441
               
               
               Cow position:chr7:39791222-39791635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr7:54602335-54602746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 31

               
               
               Conread position:15-441
               
               
               Cow position:chr7:55538430-55538022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr7:60857870-60857473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):26, 20

               
               
               Conread position:15-441
               
               
               Cow position:chr7:64242450-64242047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr7:67798342-67798747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:15-442
               
               
               Cow position:chr7:51013457-51013865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:294
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):129, 79

               
               
               Conread position:17-358
               
               
               Cow position:chr7:30156813-30156476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:17-393
               
               
               Cow position:chr7:29371273-29370916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 53

               
               
               Conread position:17-433
               
               
               Cow position:chr7:53990246-53990631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):395, 68

               
               
               Conread position:18-265
               
               
               Cow position:chr7:7255747-7256011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:18-399
               
               
               Cow position:chr7:20799960-20799578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:271
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):80, 276

               
               
               Conread position:18-441
               
               
               Cow position:chr7:11467270-11466842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:294
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):78, 160

               
               
               Conread position:18-441
               
               
               Cow position:chr7:27102655-27102218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 426

               
               
               Conread position:19-402
               
               
               Cow position:chr7:13538238-13537872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr7:17414-16977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):74, 153

               
               
               Conread position:19-441
               
               
               Cow position:chr7:447130-446736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:291
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):369, 65

               
               
               Conread position:19-441
               
               
               Cow position:chr7:3301698-3301259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 270

               
               
               Conread position:19-441
               
               
               Cow position:chr7:25438997-25439419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):69, 129

               
               
               Conread position:19-441
               
               
               Cow position:chr7:26025518-26025934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):103, 65

               
               
               Conread position:19-441
               
               
               Cow position:chr7:47374453-47374892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:20-401
               
               
               Cow position:chr7:6720005-6720403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:34-441
               
               
               Cow position:chr7:29469366-29469757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 61

               
               
               Conread position:35-276
               
               
               Cow position:chr7:33406704-33406479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:37-442
               
               
               Cow position:chr7:39109210-39108822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 58

               
               
               Conread position:41-435
               
               
               Cow position:chr7:27531359-27530974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):66, 82

               
               
               Conread position:54-441
               
               
               Cow position:chr7:21309741-21310104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:273
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):359, 41

               
               
               Conread position:73-432
               
               
               Cow position:chr7:41876947-41876592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):69, 34

               
               
               Conread position:88-441
               
               
               Cow position:chr7:6649111-6648760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 0

               
               
               Conread position:93-441
               
               
               Cow position:chr7:26890358-26890697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:98-354
               
               
               Cow position:chr7:20529143-20528887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):234, 57

               
               
               Conread position:98-396
               
               
               Cow position:chr7:6643320-6643022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr7:3235130-3234788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr7:61558766-61559108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 60

               
               
               Conread position:98-441
               
               
               Cow position:chr7:63020409-63020748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 107

               
               
               Conread position:99-389
               
               
               Cow position:chr7:63384907-63385199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 0

               
               
               Conread position:103-438
               
               
               Cow position:chr7:750485-750825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):63, 57

               
               
               Conread position:104-441
               
               
               Cow position:chr7:21128086-21127762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:104-441
               
               
               Cow position:chr7:46902515-46902181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:107-441
               
               
               Cow position:chr7:20294439-20294767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 58

               
               
               Conread position:116-441
               
               
               Cow position:chr7:52120508-52120184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):262, 44

               
               
               Conread position:120-435
               
               
               Cow position:chr7:25686634-25686325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 94

               
               
               Conread position:123-401
               
               
               Cow position:chr7:59027605-59027873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):197, 11

               
               
               Conread position:123-435
               
               
               Cow position:chr7:18962523-18962821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):71, 24

               
               
               Conread position:126-436
               
               
               Cow position:chr7:49290182-49290485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):175, 8

               
               
               Conread position:131-441
               
               
               Cow position:chr7:41870344-41870036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 116

               
               
               Conread position:133-451
               
               
               Cow position:chr7:20307194-20306885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:134-441
               
               
               Cow position:chr7:36084914-36085233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):9, 142

               
               
               Conread position:138-429
               
               
               Cow position:chr7:522244-521961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:138-429
               
               
               Cow position:chr7:35287971-35287678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 272

               
               
               Conread position:142-435
               
               
               Cow position:chr7:1400752-1400471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:142-436
               
               
               Cow position:chr7:68858486-68858202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 15

               
               
               Conread position:151-441
               
               
               Cow position:chr7:38536129-38536413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):163, 28

               
               
               Conread position:151-442
               
               
               Cow position:chr7:55281192-55280906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 141

               
               
               Conread position:160-395
               
               
               Cow position:chr7:68907224-68907466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:170-402
               
               
               Cow position:chr7:62680031-62679797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:176-345
               
               
               Cow position:chr7:41489766-41489934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):11, 5

               
               
               Conread position:176-441
               
               
               Cow position:chr7:35297964-35297703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 158

               
               
               Conread position:181-435
               
               
               Cow position:chr7:59136067-59136322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 20

               
               
               Conread position:189-441
               
               
               Cow position:chr7:19925168-19924919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):205, 0

               
               
               Conread position:189-441
               
               
               Cow position:chr7:68436399-68436150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:190-441
               
               
               Cow position:chr7:11446204-11446451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:191-441
               
               
               Cow position:chr7:67416690-67416940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):129, 65

               
               
               Conread position:197-441
               
               
               Cow position:chr7:21976084-21975840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:205-441
               
               
               Cow position:chr7:45949488-45949252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:206-441
               
               
               Cow position:chr7:51911691-51911457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):95, 225

               
               
               Conread position:223-441
               
               
               Cow position:chr7:993914-994131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):84, 14

               
               
               Conread position:298-436
               
               
               Cow position:chr7:6489556-6489420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:1-249
               
               
               Cow position:chr8:19229460-19229700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:1-328
               
               
               Cow position:chr8:24421125-24420818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1-401
               
               
               Cow position:chr8:45161703-45161316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:1-402
               
               
               Cow position:chr8:53426987-53427372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 94

               
               
               Conread position:1-433
               
               
               Cow position:chr8:11800893-11801311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 82

               
               
               Conread position:1-436
               
               
               Cow position:chr8:38607868-38607425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 94

               
               
               Conread position:2-355
               
               
               Cow position:chr8:42161992-42161660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:2-439
               
               
               Cow position:chr8:45448124-45448529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 92

               
               
               Conread position:2-441
               
               
               Cow position:chr8:27924798-27925206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 32

               
               
               Conread position:2-441
               
               
               Cow position:chr8:27984153-27983713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 93

               
               
               Conread position:2-453
               
               
               Cow position:chr8:47884670-47885121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 160

               
               
               Conread position:8-441
               
               
               Cow position:chr8:38390038-38390450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:10-441
               
               
               Cow position:chr8:8518935-8518497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 139

               
               
               Conread position:10-441
               
               
               Cow position:chr8:61198447-61198033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 74

               
               
               Conread position:12-447
               
               
               Cow position:chr8:33588048-33588467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:14-441
               
               
               Cow position:chr8:9274660-9275102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:297
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):31, 37

               
               
               Conread position:15-275
               
               
               Cow position:chr8:14592736-14592496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-280
               
               
               Cow position:chr8:14929354-14929106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:15-300
               
               
               Cow position:chr8:30491033-30490759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):82, 92

               
               
               Conread position:15-318
               
               
               Cow position:chr8:44121526-44121822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:15-328
               
               
               Cow position:chr8:38087799-38088095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:15-330
               
               
               Cow position:chr8:11761037-11761336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):243, 91

               
               
               Conread position:15-342
               
               
               Cow position:chr8:3784254-3784564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-385
               
               
               Cow position:chr8:25777201-25776848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-402
               
               
               Cow position:chr8:13735321-13735697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:15-429
               
               
               Cow position:chr8:33429598-33429983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:15-433
               
               
               Cow position:chr8:46945488-46945051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 316

               
               
               Conread position:15-436
               
               
               Cow position:chr8:11970898-11970483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 81

               
               
               Conread position:15-436
               
               
               Cow position:chr8:44077345-44076942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 29

               
               
               Conread position:15-439
               
               
               Cow position:chr8:4686069-4686475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:15-440
               
               
               Cow position:chr8:50289498-50289069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:284
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):78, 137

               
               
               Conread position:15-441
               
               
               Cow position:chr8:2171724-2171297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 119

               
               
               Conread position:15-441
               
               
               Cow position:chr8:8230128-8229699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 7

               
               
               Conread position:15-441
               
               
               Cow position:chr8:8316952-8316552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 68

               
               
               Conread position:15-441
               
               
               Cow position:chr8:23770313-23770722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr8:24916655-24916254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr8:25407134-25407531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr8:32319874-32319464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr8:36636869-36636459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr8:36637984-36637574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr8:44244898-44244492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr8:45796069-45795661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr8:47073912-47074352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:297
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):73, 28

               
               
               Conread position:15-441
               
               
               Cow position:chr8:49214101-49214512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 74

               
               
               Conread position:15-441
               
               
               Cow position:chr8:50993469-50993870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):387, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr8:59263219-59262811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr8:60059878-60060286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:15-447
               
               
               Cow position:chr8:3857339-3856926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:15-447
               
               
               Cow position:chr8:8402526-8402113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:16-435
               
               
               Cow position:chr8:9540828-9540413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 79

               
               
               Conread position:18-400
               
               
               Cow position:chr8:10748028-10748422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 314

               
               
               Conread position:18-441
               
               
               Cow position:chr8:2885395-2885827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 277

               
               
               Conread position:18-441
               
               
               Cow position:chr8:25522076-25522481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:18-441
               
               
               Cow position:chr8:26007119-26006684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 314

               
               
               Conread position:18-441
               
               
               Cow position:chr8:32439798-32439359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 359

               
               
               Conread position:18-441
               
               
               Cow position:chr8:37657617-37657187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 289

               
               
               Conread position:18-441
               
               
               Cow position:chr8:47070165-47069724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 157

               
               
               Conread position:18-441
               
               
               Cow position:chr8:47662649-47662244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:19-305
               
               
               Cow position:chr8:29581699-29582002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr8:6066072-6065640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 162

               
               
               Conread position:19-441
               
               
               Cow position:chr8:8656571-8656133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 132

               
               
               Conread position:19-441
               
               
               Cow position:chr8:27578054-27578490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 325

               
               
               Conread position:19-447
               
               
               Cow position:chr8:8904824-8904430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:285
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:19-447
               
               
               Cow position:chr8:19050157-19050576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):393, 60

               
               
               Conread position:20-441
               
               
               Cow position:chr8:1154625-1154225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:278
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:22-441
               
               
               Cow position:chr8:42467073-42467462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:281
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:35-421
               
               
               Cow position:chr8:11757405-11757781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):354, 66

               
               
               Conread position:88-439
               
               
               Cow position:chr8:12504732-12505078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:88-441
               
               
               Cow position:chr8:9734980-9735331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:89-441
               
               
               Cow position:chr8:8909968-8910306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:91-397
               
               
               Cow position:chr8:25542336-25542634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:98-396
               
               
               Cow position:chr8:1318780-1319087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:98-432
               
               
               Cow position:chr8:8557389-8557059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):300, 192

               
               
               Conread position:98-435
               
               
               Cow position:chr8:46222573-46222248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):96, 49

               
               
               Conread position:98-441
               
               
               Cow position:chr8:22572554-22572212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):209, 63

               
               
               Conread position:99-441
               
               
               Cow position:chr8:12664283-12663937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:103-395
               
               
               Cow position:chr8:13808071-13808359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:103-441
               
               
               Cow position:chr8:5015929-5016265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):82, 35

               
               
               Conread position:103-441
               
               
               Cow position:chr8:17310770-17311101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:104-435
               
               
               Cow position:chr8:42658713-42658387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:104-447
               
               
               Cow position:chr8:29441081-29440738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:104-450
               
               
               Cow position:chr8:19328701-19329047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:112-441
               
               
               Cow position:chr8:19174011-19173687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:116-441
               
               
               Cow position:chr8:45188824-45189178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:121-324
               
               
               Cow position:chr8:5873402-5873605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):75, 29

               
               
               Conread position:131-399
               
               
               Cow position:chr8:23216528-23216790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):24, 60

               
               
               Conread position:131-425
               
               
               Cow position:chr8:11821086-11821383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:139-441
               
               
               Cow position:chr8:44693089-44693378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:140-441
               
               
               Cow position:chr8:37931078-37931378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):278, 0

               
               
               Conread position:142-426
               
               
               Cow position:chr8:32632228-32631955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:160-441
               
               
               Cow position:chr8:47670263-47670538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 19

               
               
               Conread position:162-348
               
               
               Cow position:chr8:11831552-11831730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:163-441
               
               
               Cow position:chr8:42483729-42484011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 127

               
               
               Conread position:168-427
               
               
               Cow position:chr8:44036956-44036697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 153

               
               
               Conread position:176-402
               
               
               Cow position:chr8:8596076-8595850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:179-435
               
               
               Cow position:chr8:41739378-41739624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):86, 93

               
               
               Conread position:187-435
               
               
               Cow position:chr8:27377983-27378225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):115, 71

               
               
               Conread position:189-441
               
               
               Cow position:chr8:61035522-61035282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:191-429
               
               
               Cow position:chr8:45317289-45317053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:191-441
               
               
               Cow position:chr8:32930338-32930597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):121, 166

               
               
               Conread position:207-441
               
               
               Cow position:chr8:39196367-39196133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-436
               
               
               Cow position:chr8:46091982-46091784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):160, 168

               
               
               Conread position:256-441
               
               
               Cow position:chr8:14592290-14592112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):8, 148

               
               
               Conread position:271-441
               
               
               Cow position:chr8:14929079-14928909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):145, 79

               
               
               Conread position:1-441
               
               
               Cow position:chr9:4984088-4984509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):266, 22

               
               
               Conread position:2-338
               
               
               Cow position:chr9:8969722-8969410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):330, 93

               
               
               Conread position:4-441
               
               
               Cow position:chr9:29629433-29629012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:11-441
               
               
               Cow position:chr9:418206-417796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:15-358
               
               
               Cow position:chr9:10855524-10855852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 69

               
               
               Conread position:15-436
               
               
               Cow position:chr9:2488666-2488241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:287
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):73, 271

               
               
               Conread position:15-436
               
               
               Cow position:chr9:59443153-59443582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 82

               
               
               Conread position:15-439
               
               
               Cow position:chr9:1996587-1996180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):390, 58

               
               
               Conread position:15-439
               
               
               Cow position:chr9:9012433-9012843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr9:3548845-3548438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr9:5003338-5003748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr9:6051712-6051312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:284
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr9:16175093-16175502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr9:27034034-27034442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:15-441
               
               
               Cow position:chr9:28020872-28021282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):397, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr9:30671696-30672105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):408, 69

               
               
               Conread position:15-441
               
               
               Cow position:chr9:31806864-31807272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:15-441
               
               
               Cow position:chr9:37163482-37163073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr9:37971883-37971472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr9:42309007-42309418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 65

               
               
               Conread position:15-441
               
               
               Cow position:chr9:42568198-42568605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr9:45872644-45873084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 381

               
               
               Conread position:15-441
               
               
               Cow position:chr9:47001538-47001939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr9:51183383-51182976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr9:59483339-59482937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chr9:59535430-59535833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-446
               
               
               Cow position:chr9:6831218-6830809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 69

               
               
               Conread position:15-447
               
               
               Cow position:chr9:59174832-59174416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:17-441
               
               
               Cow position:chr9:54359933-54360338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:18-441
               
               
               Cow position:chr9:223227-222814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):104, 66

               
               
               Conread position:18-441
               
               
               Cow position:chr9:2199444-2199842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):323, 88

               
               
               Conread position:18-441
               
               
               Cow position:chr9:4671904-4672342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 154

               
               
               Conread position:18-441
               
               
               Cow position:chr9:17065092-17064663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):39, 186

               
               
               Conread position:18-441
               
               
               Cow position:chr9:27933389-27933829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:18-441
               
               
               Cow position:chr9:34243303-34242863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:18-441
               
               
               Cow position:chr9:46626502-46626064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 154

               
               
               Conread position:19-427
               
               
               Cow position:chr9:59456269-59455878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:19-441
               
               
               Cow position:chr9:781503-781067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:290
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):69, 155

               
               
               Conread position:19-441
               
               
               Cow position:chr9:1252653-1252232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:279
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):111, 42

               
               
               Conread position:19-441
               
               
               Cow position:chr9:2185254-2185696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 169

               
               
               Conread position:19-441
               
               
               Cow position:chr9:16267657-16268096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 226

               
               
               Conread position:19-441
               
               
               Cow position:chr9:50788865-50789301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 290

               
               
               Conread position:19-442
               
               
               Cow position:chr9:2629847-2630253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:38-436
               
               
               Cow position:chr9:2500982-2500566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 392

               
               
               Conread position:38-441
               
               
               Cow position:chr9:832085-831699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 45

               
               
               Conread position:84-429
               
               
               Cow position:chr9:29028852-29028506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:90-441
               
               
               Cow position:chr9:2170439-2170790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 256

               
               
               Conread position:92-402
               
               
               Cow position:chr9:3868113-3867808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:94-393
               
               
               Cow position:chr9:2493230-2492934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 9

               
               
               Conread position:97-435
               
               
               Cow position:chr9:3938395-3938061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):315, 21

               
               
               Conread position:97-441
               
               
               Cow position:chr9:25755815-25755471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):84, 300

               
               
               Conread position:98-429
               
               
               Cow position:chr9:12401639-12401967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr9:164098-163755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr9:1076805-1076464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:98-441
               
               
               Cow position:chr9:25483264-25483608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 111

               
               
               Conread position:98-441
               
               
               Cow position:chr9:31194775-31194432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:99-441
               
               
               Cow position:chr9:6973565-6973887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:102-441
               
               
               Cow position:chr9:33834875-33834538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:103-441
               
               
               Cow position:chr9:13219728-13220056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):184, 99

               
               
               Conread position:104-430
               
               
               Cow position:chr9:2051857-2052174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):9, 177

               
               
               Conread position:104-441
               
               
               Cow position:chr9:7001952-7002288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 0

               
               
               Conread position:104-441
               
               
               Cow position:chr9:18510326-18509989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:107-435
               
               
               Cow position:chr9:9577007-9577328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 60

               
               
               Conread position:107-441
               
               
               Cow position:chr9:6756976-6757307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):248, 48

               
               
               Conread position:109-441
               
               
               Cow position:chr9:39992350-39992654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):270, 17

               
               
               Conread position:113-441
               
               
               Cow position:chr9:10321228-10321557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:130-441
               
               
               Cow position:chr9:59510025-59510341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):175, 199

               
               
               Conread position:140-441
               
               
               Cow position:chr9:830114-829825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):59, 16

               
               
               Conread position:142-441
               
               
               Cow position:chr9:4531930-4532229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 98

               
               
               Conread position:142-441
               
               
               Cow position:chr9:60278587-60278287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:151-441
               
               
               Cow position:chr9:3155490-3155767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:160-441
               
               
               Cow position:chr9:15071972-15072251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 19

               
               
               Conread position:162-341
               
               
               Cow position:chr9:34991110-34991284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:162-402
               
               
               Cow position:chr9:3585762-3585998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:168-429
               
               
               Cow position:chr9:28626567-28626308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 149

               
               
               Conread position:171-441
               
               
               Cow position:chr9:36723968-36724236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:176-441
               
               
               Cow position:chr9:31020276-31020545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:178-400
               
               
               Cow position:chr9:18836259-18836477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):16, 7

               
               
               Conread position:180-441
               
               
               Cow position:chr9:28677449-28677710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):251, 120

               
               
               Conread position:186-398
               
               
               Cow position:chr9:7062626-7062414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:188-441
               
               
               Cow position:chr9:793022-792778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):151, 50

               
               
               Conread position:188-441
               
               
               Cow position:chr9:37130059-37129803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):63, 101

               
               
               Conread position:189-430
               
               
               Cow position:chr9:3567370-3567129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:189-441
               
               
               Cow position:chr9:26712834-26712584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):215, 0

               
               
               Conread position:190-430
               
               
               Cow position:chr9:34107235-34106993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):117, 141

               
               
               Conread position:193-367
               
               
               Cow position:chr9:10314868-10315042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):108, 41

               
               
               Conread position:200-439
               
               
               Cow position:chr9:22650649-22650884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:202-400
               
               
               Cow position:chr9:651597-651393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):91, 76

               
               
               Conread position:203-441
               
               
               Cow position:chr9:60651965-60651729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:205-402
               
               
               Cow position:chr9:1979446-1979641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:210-441
               
               
               Cow position:chr9:32968244-32968476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):39, 190

               
               
               Conread position:257-429
               
               
               Cow position:chr9:35657518-35657686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:263-428
               
               
               Cow position:chr9:2697378-2697209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:1-320
               
               
               Cow position:chrX:28553235-28553543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:1-397
               
               
               Cow position:chrX:29283949-29284333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):339, 45

               
               
               Conread position:1-402
               
               
               Cow position:chrX:16017918-16017522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 81

               
               
               Conread position:1-432
               
               
               Cow position:chrX:16236535-16236959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):354, 31

               
               
               Conread position:1-436
               
               
               Cow position:chrX:21586235-21586671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 94

               
               
               Conread position:2-441
               
               
               Cow position:chrX:11534711-11535124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:2-441
               
               
               Cow position:chrX:21602117-21602529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 13

               
               
               Conread position:2-441
               
               
               Cow position:chrX:25332313-25332729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):78, 100

               
               
               Conread position:2-441
               
               
               Cow position:chrX:30046888-30046477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):393, 93

               
               
               Conread position:2-441
               
               
               Cow position:chrX:40057832-40057424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:301
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):393, 96

               
               
               Conread position:8-441
               
               
               Cow position:chrX:5834927-5834529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:10-435
               
               
               Cow position:chrX:22620118-22619680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 305

               
               
               Conread position:11-441
               
               
               Cow position:chrX:5299975-5299564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:15-332
               
               
               Cow position:chrX:35019883-35020181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):170, 80

               
               
               Conread position:15-369
               
               
               Cow position:chrX:9901380-9901028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 206

               
               
               Conread position:15-398
               
               
               Cow position:chrX:28549130-28549494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):335, 67

               
               
               Conread position:15-402
               
               
               Cow position:chrX:22131468-22131092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 80

               
               
               Conread position:15-428
               
               
               Cow position:chrX:16698530-16698929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 71

               
               
               Conread position:15-429
               
               
               Cow position:chrX:23276350-23276746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-429
               
               
               Cow position:chrX:29883019-29882610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):351, 80

               
               
               Conread position:15-430
               
               
               Cow position:chrX:2142541-2142938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):371, 81

               
               
               Conread position:15-433
               
               
               Cow position:chrX:26767966-26767562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):378, 68

               
               
               Conread position:15-433
               
               
               Cow position:chrX:30055889-30056305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 193

               
               
               Conread position:15-440
               
               
               Cow position:chrX:30369755-30369345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):59, 81

               
               
               Conread position:15-441
               
               
               Cow position:chrX:1546165-1546575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chrX:2483404-2482998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):384, 67

               
               
               Conread position:15-441
               
               
               Cow position:chrX:11669204-11668801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:15-441
               
               
               Cow position:chrX:13413891-13413475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chrX:15598160-15598570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chrX:16274892-16275317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:295
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):73, 161

               
               
               Conread position:15-441
               
               
               Cow position:chrX:21222178-21222568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:15-441
               
               
               Cow position:chrX:22487425-22487829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chrX:25186891-25187300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chrX:26759360-26758950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chrX:29854333-29853923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chrX:30710587-30710994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:15-441
               
               
               Cow position:chrX:32095720-32095322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 69

               
               
               Conread position:15-441
               
               
               Cow position:chrX:32466481-32466892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 58

               
               
               Conread position:15-441
               
               
               Cow position:chrX:38145292-38145700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:15-441
               
               
               Cow position:chrX:41151458-41151867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:18-402
               
               
               Cow position:chrX:5324508-5324116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:274
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):79, 301

               
               
               Conread position:18-439
               
               
               Cow position:chrX:24088604-24089041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:18-441
               
               
               Cow position:chrX:8586297-8586734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 153

               
               
               Conread position:18-441
               
               
               Cow position:chrX:8963851-8963418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:292
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):70, 292

               
               
               Conread position:18-441
               
               
               Cow position:chrX:9007548-9007982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:289
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):75, 41

               
               
               Conread position:18-441
               
               
               Cow position:chrX:14787653-14787232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):192, 66

               
               
               Conread position:18-441
               
               
               Cow position:chrX:15128008-15127601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 88

               
               
               Conread position:18-441
               
               
               Cow position:chrX:21339603-21340041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 310

               
               
               Conread position:18-441
               
               
               Cow position:chrX:21489439-21489871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 164

               
               
               Conread position:18-441
               
               
               Cow position:chrX:22526402-22525964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 409

               
               
               Conread position:18-441
               
               
               Cow position:chrX:23392366-23391961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:18-441
               
               
               Cow position:chrX:26401266-26400827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 133

               
               
               Conread position:18-441
               
               
               Cow position:chrX:27427117-27426676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:18-441
               
               
               Cow position:chrX:29174396-29173960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 163

               
               
               Conread position:18-441
               
               
               Cow position:chrX:37848210-37848655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 244

               
               
               Conread position:18-447
               
               
               Cow position:chrX:3085698-3085255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 237

               
               
               Conread position:18-449
               
               
               Cow position:chrX:12672338-12671896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 397

               
               
               Conread position:19-271
               
               
               Cow position:chrX:318323-318558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:19-347
               
               
               Cow position:chrX:30010159-30010501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):79, 156

               
               
               Conread position:19-348
               
               
               Cow position:chrX:14051283-14051627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 153

               
               
               Conread position:19-366
               
               
               Cow position:chrX:28563051-28562686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):73, 343

               
               
               Conread position:19-392
               
               
               Cow position:chrX:12704710-12704320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 27

               
               
               Conread position:19-433
               
               
               Cow position:chrX:29794873-29794493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:291
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):412, 78

               
               
               Conread position:19-441
               
               
               Cow position:chrX:5284524-5284094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):69, 313

               
               
               Conread position:19-441
               
               
               Cow position:chrX:5395761-5395322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:19-441
               
               
               Cow position:chrX:5862599-5863038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:19-441
               
               
               Cow position:chrX:8478915-8479345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 128

               
               
               Conread position:19-441
               
               
               Cow position:chrX:8669795-8670233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 394

               
               
               Conread position:19-441
               
               
               Cow position:chrX:9173162-9172726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 225

               
               
               Conread position:19-441
               
               
               Cow position:chrX:9193440-9193004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 225

               
               
               Conread position:19-441
               
               
               Cow position:chrX:11465796-11465361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 132

               
               
               Conread position:19-441
               
               
               Cow position:chrX:12804650-12804222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):69, 170

               
               
               Conread position:19-441
               
               
               Cow position:chrX:13077488-13077054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 288

               
               
               Conread position:19-441
               
               
               Cow position:chrX:13098062-13097628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 288

               
               
               Conread position:19-441
               
               
               Cow position:chrX:16363921-16363482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:19-441
               
               
               Cow position:chrX:21828771-21829164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:19-441
               
               
               Cow position:chrX:24325942-24325505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 155

               
               
               Conread position:19-441
               
               
               Cow position:chrX:28759418-28758985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 293

               
               
               Conread position:19-441
               
               
               Cow position:chrX:39521108-39521547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:19-447
               
               
               Cow position:chrX:24485210-24484764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:304
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):88, 222

               
               
               Conread position:20-326
               
               
               Cow position:chrX:978824-979147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:20-369
               
               
               Cow position:chrX:21305311-21304946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:20-377
               
               
               Cow position:chrX:6576900-6577272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):67, 298

               
               
               Conread position:20-441
               
               
               Cow position:chrX:3422237-3421799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 398

               
               
               Conread position:21-349
               
               
               Cow position:chrX:22813628-22813950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):142, 61

               
               
               Conread position:36-395
               
               
               Cow position:chrX:12182422-12182794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):14, 172

               
               
               Conread position:46-441
               
               
               Cow position:chrX:24122655-24122277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:47-402
               
               
               Cow position:chrX:18532258-18532607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:61-436
               
               
               Cow position:chrX:21270899-21270548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:83-441
               
               
               Cow position:chrX:6873794-6873429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):97, 254

               
               
               Conread position:85-434
               
               
               Cow position:chrX:28522414-28522064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 317

               
               
               Conread position:87-446
               
               
               Cow position:chrX:35017107-35017460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):32, 150

               
               
               Conread position:88-307
               
               
               Cow position:chrX:13032140-13031922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):71, 116

               
               
               Conread position:88-402
               
               
               Cow position:chrX:31079827-31080136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):166, 32

               
               
               Conread position:89-430
               
               
               Cow position:chrX:24139688-24139356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):22, 67

               
               
               Conread position:97-436
               
               
               Cow position:chrX:28635114-28634780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 51

               
               
               Conread position:97-441
               
               
               Cow position:chrX:2860499-2860161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):45, 37

               
               
               Conread position:98-322
               
               
               Cow position:chrX:22583624-22583398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:98-393
               
               
               Cow position:chrX:16565170-16565468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:98-427
               
               
               Cow position:chrX:15981186-15980857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:98-441
               
               
               Cow position:chrX:2101165-2101499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 0

               
               
               Conread position:98-441
               
               
               Cow position:chrX:2603348-2603689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 57

               
               
               Conread position:98-441
               
               
               Cow position:chrX:3376921-3376583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:98-441
               
               
               Cow position:chrX:5337282-5336929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:98-441
               
               
               Cow position:chrX:7751204-7751539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 0

               
               
               Conread position:98-441
               
               
               Cow position:chrX:12280958-12280615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:98-441
               
               
               Cow position:chrX:12341493-12341838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:98-441
               
               
               Cow position:chrX:13398816-13398476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 21

               
               
               Conread position:98-441
               
               
               Cow position:chrX:15180138-15179789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:239
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):44, 36

               
               
               Conread position:98-441
               
               
               Cow position:chrX:18218699-18219037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):109, 194

               
               
               Conread position:98-441
               
               
               Cow position:chrX:20316754-20316415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:98-441
               
               
               Cow position:chrX:20360633-20360291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 73

               
               
               Conread position:98-441
               
               
               Cow position:chrX:22610608-22610949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):276, 0

               
               
               Conread position:98-441
               
               
               Cow position:chrX:24380605-24380951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:98-441
               
               
               Cow position:chrX:28506640-28506298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:98-441
               
               
               Cow position:chrX:31187936-31187593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 103

               
               
               Conread position:98-447
               
               
               Cow position:chrX:12655449-12655107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:102-433
               
               
               Cow position:chrX:28651806-28651495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:103-400
               
               
               Cow position:chrX:31192458-31192169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):8, 58

               
               
               Conread position:103-441
               
               
               Cow position:chrX:26504489-26504831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):5, 261

               
               
               Conread position:104-402
               
               
               Cow position:chrX:26629015-26628715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 77

               
               
               Conread position:104-441
               
               
               Cow position:chrX:970078-970406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 0

               
               
               Conread position:104-441
               
               
               Cow position:chrX:18955211-18954874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:104-441
               
               
               Cow position:chrX:23456267-23455930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:104-441
               
               
               Cow position:chrX:26527279-26527616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:104-441
               
               
               Cow position:chrX:30232800-30232463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 228

               
               
               Conread position:107-441
               
               
               Cow position:chrX:17632519-17632182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):198, 15

               
               
               Conread position:112-441
               
               
               Cow position:chrX:30174342-30174022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):49, 27

               
               
               Conread position:113-447
               
               
               Cow position:chrX:30179668-30179346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:122-400
               
               
               Cow position:chrX:6887029-6886770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:122-402
               
               
               Cow position:chrX:2787892-2787611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 243

               
               
               Conread position:122-435
               
               
               Cow position:chrX:19927635-19927951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):169, 268

               
               
               Conread position:123-396
               
               
               Cow position:chrX:32430010-32430282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):143, 33

               
               
               Conread position:129-441
               
               
               Cow position:chrX:12289604-12289301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:141-401
               
               
               Cow position:chrX:19185604-19185348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 156

               
               
               Conread position:141-401
               
               
               Cow position:chrX:34987988-34988251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):122, 116

               
               
               Conread position:141-402
               
               
               Cow position:chrX:20698922-20698675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:142-384
               
               
               Cow position:chrX:23041971-23041729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):170, 23

               
               
               Conread position:148-398
               
               
               Cow position:chrX:20795963-20796208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):14, 31

               
               
               Conread position:150-441
               
               
               Cow position:chrX:30143034-30142748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):103, 15

               
               
               Conread position:160-402
               
               
               Cow position:chrX:20803502-20803739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 19

               
               
               Conread position:161-441
               
               
               Cow position:chrX:7029550-7029831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:162-436
               
               
               Cow position:chrX:4795290-4795553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:165-393
               
               
               Cow position:chrX:29951198-29950973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:168-441
               
               
               Cow position:chrX:13007265-13006993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 138

               
               
               Conread position:172-433
               
               
               Cow position:chrX:27990405-27990146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):125, 203

               
               
               Conread position:176-434
               
               
               Cow position:chrX:17668910-17668653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):146, 215

               
               
               Conread position:176-436
               
               
               Cow position:chrX:21290109-21289856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:176-441
               
               
               Cow position:chrX:24137019-24136754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:176-441
               
               
               Cow position:chrX:39717174-39717437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):127, 228

               
               
               Conread position:180-441
               
               
               Cow position:chrX:8454138-8454396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:180-441
               
               
               Cow position:chrX:30666559-30666298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):38, 29

               
               
               Conread position:181-441
               
               
               Cow position:chrX:24275052-24275313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 0

               
               
               Conread position:191-441
               
               
               Cow position:chrX:21633191-21632943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:191-441
               
               
               Cow position:chrX:23046537-23046786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:194-327
               
               
               Cow position:chrX:30990560-30990427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:197-441
               
               
               Cow position:chrX:12478122-12478362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:197-441
               
               
               Cow position:chrX:22777712-22777952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 0

               
               
               Conread position:203-441
               
               
               Cow position:chrX:29092906-29093145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:223-441
               
               
               Cow position:chrX:6909909-6909694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:230-441
               
               
               Cow position:chrX:23018762-23018970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):182, 0

               
               
               Conread position:236-441
               
               
               Cow position:chrX:10532123-10531918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:236-441
               
               
               Cow position:chrX:30184453-30184253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 129

               
               
               Conread position:252-402
               
               
               Cow position:chrX:27494156-27494305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:252-432
               
               
               Cow position:chrX:31198053-31198228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:255-441
               
               
               Cow position:chrX:28604355-28604161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 101

               
               
               Conread position:267-441
               
               
               Cow position:chrX:7481073-7481244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:272-442
               
               
               Cow position:chrX:6276118-6275952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:292-441
               
               
               Cow position:chrX:319962-320111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):125, 108

               
               
               Conread position:293-429
               
               
               Cow position:chrX:24276013-24275877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):101, 13

               
               
               Conread position:293-441
               
               
               Cow position:chrX:982159-982307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0
Conread position:	1-403
Cow position:	chr1:67285968-67286338 (view UCSC Genome Browser custom track)
Alignm length:	403
Alignm identity:	293
Alignm E-value:	0
Alignm gaps (pig, cow):	94, 0
Conread position:	1-441
Cow position:	chr1:18244925-18244502 (view UCSC Genome Browser custom track)
Alignm length:	442
Alignm identity:	310
Alignm E-value:	0
Alignm gaps (pig, cow):	377, 94
Conread position:	1-442
Cow position:	chr1:40514031-40513611 (view UCSC Genome Browser custom track)
Alignm length:	442
Alignm identity:	315
Alignm E-value:	0
Alignm gaps (pig, cow):	66, 0
Conread position:	2-164
Cow position:	chr1:62854347-62854189 (view UCSC Genome Browser custom track)
Alignm length:	163
Alignm identity:	116
Alignm E-value:	5e-21
Alignm gaps (pig, cow):	93, 0
Conread position:	2-378
Cow position:	chr1:11863815-11863439 (view UCSC Genome Browser custom track)
Alignm length:	385
Alignm identity:	262
Alignm E-value:	0
Alignm gaps (pig, cow):	225, 83
Conread position:	2-402
Cow position:	chr1:82919177-82918811 (view UCSC Genome Browser custom track)
Alignm length:	401
Alignm identity:	273
Alignm E-value:	3e-38
Alignm gaps (pig, cow):	93, 0
Conread position:	2-432
Cow position:	chr1:101149316-101149727 (view UCSC Genome Browser custom track)
Alignm length:	438
Alignm identity:	310
Alignm E-value:	0
Alignm gaps (pig, cow):	389, 82
Conread position:	8-441
Cow position:	chr1:57567418-57567836 (view UCSC Genome Browser custom track)
Alignm length:	436
Alignm identity:	310
Alignm E-value:	0
Alignm gaps (pig, cow):	71, 100
Conread position:	11-396
Cow position:	chr1:79637470-79637094 (view UCSC Genome Browser custom track)
Alignm length:	390
Alignm identity:	272
Alignm E-value:	0
Alignm gaps (pig, cow):	301, 35
Conread position:	11-441
Cow position:	chr1:93853993-93854406 (view UCSC Genome Browser custom track)
Alignm length:	432
Alignm identity:	309
Alignm E-value:	0
Alignm gaps (pig, cow):	263, 73
Conread position:	14-441
Cow position:	chr1:67902962-67902536 (view UCSC Genome Browser custom track)
Alignm length:	439
Alignm identity:	284
Alignm E-value:	2e-33
Alignm gaps (pig, cow):	150, 84
Conread position:	15-312
Cow position:	chr1:37455191-37455470 (view UCSC Genome Browser custom track)
Alignm length:	299
Alignm identity:	200
Alignm E-value:	3e-26
Alignm gaps (pig, cow):	114, 69
Conread position:	15-329
Cow position:	chr1:94659353-94659651 (view UCSC Genome Browser custom track)
Alignm length:	315
Alignm identity:	229
Alignm E-value:	0
Alignm gaps (pig, cow):	59, 0
Conread position:	15-342
Cow position:	chr1:72079958-72080265 (view UCSC Genome Browser custom track)
Alignm length:	328
Alignm identity:	230
Alignm E-value:	4.99983e-42
Alignm gaps (pig, cow):	69, 0
Conread position:	15-393
Cow position:	chr1:57656002-57656396 (view UCSC Genome Browser custom track)
Alignm length:	397
Alignm identity:	277
Alignm E-value:	0
Alignm gaps (pig, cow):	82, 318
Conread position:	15-402
Cow position:	chr1:79336318-79335956 (view UCSC Genome Browser custom track)
Alignm length:	390
Alignm identity:	276
Alignm E-value:	0
Alignm gaps (pig, cow):	170, 55
Conread position:	15-433
Cow position:	chr1:52173028-52172592 (view UCSC Genome Browser custom track)
Alignm length:	438
Alignm identity:	311
Alignm E-value:	0
Alignm gaps (pig, cow):	73, 336
Conread position:	15-439
Cow position:	chr1:67835681-67835254 (view UCSC Genome Browser custom track)
Alignm length:	437
Alignm identity:	284
Alignm E-value:	3e-37
Alignm gaps (pig, cow):	78, 163
Conread position:	15-441
Cow position:	chr1:3386530-3386121 (view UCSC Genome Browser custom track)
Alignm length:	427
Alignm identity:	307
Alignm E-value:	0
Alignm gaps (pig, cow):	69, 0
Conread position:	15-447
Cow position:	chr1:49974711-49974299 (view UCSC Genome Browser custom track)
Alignm length:	434
Alignm identity:	306
Alignm E-value:	0
Alignm gaps (pig, cow):	326, 53