Cow genome map
| Conread name: | Ss1.1-Pig1-67B16.5 |
| Conread position: | 476-621 |
| Cow position: | chr1:50744893-50745037 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 604-755 |
| Cow position: | chr1:50745137-50745289 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 402-759 |
| Cow position: | chr14:3128108-3127751 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 154, 161 |
| Conread position: | 403-759 |
| Cow position: | chr14:25895113-25895469 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 306, 294 |
| Conread position: | 405-761 |
| Cow position: | chr14:25895619-25895975 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 151, 155 |
| Conread position: | 405-771 |
| Cow position: | chr14:25895031-25895397 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 405-840 |
| Cow position: | chr14:25895283-25895718 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 57, 51 |
| Conread position: | 406-750 |
| Cow position: | chr14:3080676-3080332 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 114, 120 |
| Conread position: | 406-768 |
| Cow position: | chr14:25895200-25895562 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 40, 44 |
| Conread position: | 406-768 |
| Cow position: | chr14:25895368-25895730 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 406-771 |
| Cow position: | chr14:433980-434345 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 60, 64 |
| Conread position: | 456-759 |
| Cow position: | chr14:3080458-3080155 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 405-787 |
| Cow position: | chr17:41440786-41440404 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 65 |
| Conread position: | 411-768 |
| Cow position: | chr17:44467615-44467972 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 42, 51 |
| Conread position: | 405-759 |
| Cow position: | chr18:56329345-56328991 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 48 |
| Conread position: | 406-788 |
| Cow position: | chr18:49033295-49032913 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 59, 64 |
| Conread position: | 439-759 |
| Cow position: | chr18:56391311-56390991 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 27, 31 |
| Conread position: | 441-824 |
| Cow position: | chr18:56391393-56391011 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 25, 29 |
| Conread position: | 469-785 |
| Cow position: | chr18:56391533-56391217 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 480-813 |
| Cow position: | chr18:56391186-56390853 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 55, 66 |
| Conread position: | 2-134 |
| Cow position: | chr19:14687010-14687139 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 196-323 |
| Cow position: | chr19:14687431-14687558 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 319-745 |
| Cow position: | chr19:14688309-14688730 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 224 |
| Conread position: | 604-756 |
| Cow position: | chr19:14688788-14688940 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 140 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 749-1380 |
| Cow position: | chr19:14689336-14689985 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 6 |
| Conread position: | 405-758 |
| Cow position: | chr21:12659504-12659857 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 69, 77 |
| Conread position: | 405-785 |
| Cow position: | chr21:12659000-12659380 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 406-759 |
| Cow position: | chr21:12659253-12659606 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 406-759 |
| Cow position: | chr21:12659589-12659942 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 223, 212 |
| Conread position: | 406-760 |
| Cow position: | chr21:12659337-12659691 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 35, 27 |
| Conread position: | 441-759 |
| Cow position: | chr21:12658952-12659270 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 186, 177 |
| Conread position: | 480-771 |
| Cow position: | chr21:12659159-12659450 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 133, 158 |
| Conread position: | 381-824 |
| Cow position: | chr25:3636504-3636061 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 262 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 26, 251 |
| Conread position: | 390-813 |
| Cow position: | chr25:4657479-4657058 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 84, 19 |
| Conread position: | 406-723 |
| Cow position: | chr25:34473759-34474073 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 406-759 |
| Cow position: | chr25:3664015-3664368 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 28 |
| Conread position: | 406-759 |
| Cow position: | chr25:25652440-25652793 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 406-787 |
| Cow position: | chr25:3664099-3664480 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 45, 64 |
| Conread position: | 406-815 |
| Cow position: | chr25:3636394-3635986 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 54, 28 |
| Conread position: | 409-759 |
| Cow position: | chr25:3663934-3664284 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 411-765 |
| Cow position: | chr25:4657376-4657024 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 291, 301 |
| Conread position: | 458-824 |
| Cow position: | chr25:33530197-33530562 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 77, 82 |
| Conread position: | 481-772 |
| Cow position: | chr25:34473750-34474038 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 37, 44 |
| Conread position: | 481-827 |
| Cow position: | chr25:33506823-33507169 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 156, 150 |
| Conread position: | 487-767 |
| Cow position: | chr25:3663927-3664208 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 402-758 |
| Cow position: | chr28:34695908-34696264 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 64, 45 |
| Conread position: | 403-768 |
| Cow position: | chr28:34695993-34696358 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 63, 46 |
| Conread position: | 405-743 |
| Cow position: | chr28:34696247-34696585 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 406-762 |
| Cow position: | chr28:34696164-34696520 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 35, 27 |
| Conread position: | 478-758 |
| Cow position: | chr28:34696152-34696432 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 172, 163 |
| Conread position: | 411-744 |
| Cow position: | chr4:65494762-65494429 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 132, 124 |
| Conread position: | 495-789 |
| Cow position: | chr4:65703494-65703200 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 283, 275 |
| Conread position: | 403-761 |
| Cow position: | chr6:49428645-49429003 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 405-759 |
| Cow position: | chr6:49428395-49428749 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 208, 219 |
| Conread position: | 405-760 |
| Cow position: | chr6:49428226-49428582 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 5, 75 |
| Conread position: | 405-761 |
| Cow position: | chr6:49428899-49429255 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 37, 28 |
| Conread position: | 405-780 |
| Cow position: | chr6:49428311-49428686 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 247 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 296, 306 |
| Conread position: | 406-753 |
| Cow position: | chr6:49428984-49429331 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 128, 134 |
| Conread position: | 406-759 |
| Cow position: | chr6:49428480-49428833 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 40, 44 |
| Conread position: | 406-768 |
| Cow position: | chr6:49428732-49429094 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 128, 137 |
| Conread position: | 406-771 |
| Cow position: | chr6:49428816-49429181 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 406-780 |
| Cow position: | chr6:49428564-49428938 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 128, 136 |
| Conread position: | 487-806 |
| Cow position: | chr6:49428224-49428544 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 7, 226 |