Cow genome map
| Conread name: | Ss1.1-Pig1-9M09.5 |
| Conread position: | 3-142 |
| Cow position: | chr1:40097329-40097467 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 29, 43 |
| Conread position: | 3-151 |
| Cow position: | chr10:33683041-33683189 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 119, 143 |
| Conread position: | 18-152 |
| Cow position: | chr10:16824312-16824451 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 22-140 |
| Cow position: | chr10:36755081-36754964 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 3-142 |
| Cow position: | chr11:76391238-76391379 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 3-159 |
| Cow position: | chr11:61948684-61948843 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 18-152 |
| Cow position: | chr11:29824764-29824899 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 505-814 |
| Cow position: | chr11:29825204-29825494 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 63 |
| Conread position: | 3-142 |
| Cow position: | chr13:14782647-14782789 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 3-154 |
| Cow position: | chr13:8338519-8338676 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 38-139 |
| Cow position: | chr13:58392540-58392440 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 39-154 |
| Cow position: | chr13:51231551-51231435 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 18-153 |
| Cow position: | chr15:20773033-20773169 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 3-142 |
| Cow position: | chr16:18457723-18457587 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 49 |
| Conread position: | 5-139 |
| Cow position: | chr16:21508373-21508237 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 3-152 |
| Cow position: | chr17:32196708-32196854 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 19, 107 |
| Conread position: | 6-144 |
| Cow position: | chr17:7463270-7463411 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 8-117 |
| Cow position: | chr17:35935225-35935114 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-152 |
| Cow position: | chr18:47294404-47294556 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 4-154 |
| Cow position: | chr18:41207618-41207465 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 27-124 |
| Cow position: | chr18:21903722-21903625 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 83 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-142 |
| Cow position: | chr19:13645534-13645392 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 4-153 |
| Cow position: | chr2:10127883-10127730 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 6-172 |
| Cow position: | chr2:53559437-53559606 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-143 |
| Cow position: | chr20:16939562-16939705 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 43 |
| Conread position: | 3-142 |
| Cow position: | chr20:26244612-26244471 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 3-142 |
| Cow position: | chr20:29114884-29114742 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 4-142 |
| Cow position: | chr20:28303409-28303548 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 106 |
| Conread position: | 3-139 |
| Cow position: | chr21:45907972-45908110 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 3-145 |
| Cow position: | chr21:38054254-38054399 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 3-152 |
| Cow position: | chr22:20634758-20634606 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 5-137 |
| Cow position: | chr22:38942617-38942482 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 6-139 |
| Cow position: | chr22:19036645-19036781 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 3-161 |
| Cow position: | chr23:25704447-25704293 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 119, 24 |
| Conread position: | 18-143 |
| Cow position: | chr23:19168978-19169104 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 5-141 |
| Cow position: | chr24:22314596-22314735 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-154 |
| Cow position: | chr25:15031015-15031170 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 22, 85 |
| Conread position: | 2-143 |
| Cow position: | chr25:6685251-6685112 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 22, 75 |
| Conread position: | 3-141 |
| Cow position: | chr25:29149648-29149509 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 72 |
| Conread position: | 3-142 |
| Cow position: | chr25:1971734-1971877 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 24-152 |
| Cow position: | chr25:8232949-8233078 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 3-142 |
| Cow position: | chr26:3498130-3497985 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 17, 56 |
| Conread position: | 5-153 |
| Cow position: | chr26:1903318-1903167 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-141 |
| Cow position: | chr27:22054612-22054468 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 18-154 |
| Cow position: | chr27:24272475-24272612 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 121, 98 |
| Conread position: | 3-142 |
| Cow position: | chr28:20035838-20035697 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 4-153 |
| Cow position: | chr28:12955149-12954999 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 19, 103 |
| Conread position: | 18-139 |
| Cow position: | chr28:21830629-21830749 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 103, 30 |
| Conread position: | 3-142 |
| Cow position: | chr29:36742596-36742738 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 3-145 |
| Cow position: | chr29:22555485-22555346 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 20, 95 |
| Conread position: | 4-146 |
| Cow position: | chr3:75614934-75614789 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 17-124 |
| Cow position: | chr3:36493872-36493764 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 24-152 |
| Cow position: | chr3:77769300-77769427 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 97, 51 |
| Conread position: | 3-137 |
| Cow position: | chr4:53159703-53159574 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 3-142 |
| Cow position: | chr4:3530298-3530440 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 3-153 |
| Cow position: | chr4:44682238-44682391 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 6-150 |
| Cow position: | chr4:8125560-8125707 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 18-143 |
| Cow position: | chr4:37744495-37744368 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 3-154 |
| Cow position: | chr5:45214359-45214512 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 17, 89 |
| Conread position: | 3-152 |
| Cow position: | chr6:55723162-55723314 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 5-142 |
| Cow position: | chr7:62372946-62373085 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 3-141 |
| Cow position: | chr8:36998903-36999047 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 3-142 |
| Cow position: | chr8:5810880-5811022 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 3-151 |
| Cow position: | chr9:51312911-51312761 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 61 |
| Conread position: | 5-124 |
| Cow position: | chr9:14387691-14387573 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 5-152 |
| Cow position: | chr9:25400071-25399921 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 8-142 |
| Cow position: | chr9:37265111-37265246 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 15, 92 |
| Conread position: | 1-119 |
| Cow position: | chrX:10809462-10809582 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 3-124 |
| Cow position: | chrX:21881974-21881851 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 4-124 |
| Cow position: | chrX:147359-147479 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |