Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig2-40F20.5
        

               Conread position:
               1-218
               

               Cow position:
               chr1:102505593-102505811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 92
               

               Conread position:
               1-220
               

               Cow position:
               chr1:79743283-79743513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               78, 105
               

               Conread position:
               1-224
               

               Cow position:
               chr1:52394234-52394013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 93
               

               Conread position:
               1-283
               

               Cow position:
               chr1:52388884-52388596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 218
               

               Conread position:
               1-324
               

               Cow position:
               chr1:26406842-26406512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 93
               

               Conread position:
               4-233
               

               Cow position:
               chr1:79626896-79626673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               131, 78
               

               Conread position:
               5-220
               

               Cow position:
               chr1:49739062-49739273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               145, 89
               

               Conread position:
               5-233
               

               Cow position:
               chr1:17488351-17488112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               46, 102
               

               Conread position:
               8-216
               

               Cow position:
               chr1:12040477-12040682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               66, 7
               

               Conread position:
               9-230
               

               Cow position:
               chr1:42182389-42182620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               69, 96
               

               Conread position:
               13-232
               

               Cow position:
               chr1:92612383-92612611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               58, 129
               

               Conread position:
               13-233
               

               Cow position:
               chr1:87946743-87946512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               65, 56
               

               Conread position:
               13-324
               

               Cow position:
               chr1:5192347-5192031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               63, 11
               

               Conread position:
               15-233
               

               Cow position:
               chr1:100754006-100753778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               12, 38
               

               Conread position:
               63-280
               

               Cow position:
               chr1:98297147-98296939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               87, 17
               

               Conread position:
               77-219
               

               Cow position:
               chr1:32350677-32350538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               75, 18
               

               Conread position:
               77-232
               

               Cow position:
               chr1:82516015-82516169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               73, 18
               

               Conread position:
               79-195
               

               Cow position:
               chr1:39506771-39506654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               94
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               104-282
               

               Cow position:
               chr1:29838146-29838316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               130
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               46, 29
               

               Conread position:
               104-282
               

               Cow position:
               chr1:39060354-39060524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               132
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               46, 22
               

               Conread position:
               1-277
               

               Cow position:
               chr10:35729177-35729440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 25
               

               Conread position:
               1-281
               

               Cow position:
               chr10:35742781-35742503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 95
               

               Conread position:
               3-228
               

               Cow position:
               chr10:50419529-50419750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               81, 41
               

               Conread position:
               9-195
               

               Cow position:
               chr10:23866238-23866425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               70, 58
               

               Conread position:
               13-231
               

               Cow position:
               chr10:15313655-15313888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               60, 225
               

               Conread position:
               13-233
               

               Cow position:
               chr10:33460034-33459804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               60, 93
               

               Conread position:
               13-250
               

               Cow position:
               chr10:52977428-52977657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               182
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               59, 84
               

               Conread position:
               80-221
               

               Cow position:
               chr10:67165211-67165353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               61, 15
               

               Conread position:
               1-221
               

               Cow position:
               chr11:48257183-48257415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               78, 156
               

               Conread position:
               3-228
               

               Cow position:
               chr11:65879253-65879020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               12, 103
               

               Conread position:
               3-232
               

               Cow position:
               chr11:38210705-38210468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               37, 46
               

               Conread position:
               9-231
               

               Cow position:
               chr11:372253-372017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               44, 97
               

               Conread position:
               10-232
               

               Cow position:
               chr11:40540457-40540221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               180
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               70, 117
               

               Conread position:
               13-221
               

               Cow position:
               chr11:52074685-52074469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               39, 89
               

               Conread position:
               13-232
               

               Cow position:
               chr11:32815843-32816072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               59, 92
               

               Conread position:
               13-232
               

               Cow position:
               chr11:71359207-71359439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               47, 100
               

               Conread position:
               24-245
               

               Cow position:
               chr11:48258846-48259079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               77-231
               

               Cow position:
               chr11:65957225-65957380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               71, 147
               

               Conread position:
               82-210
               

               Cow position:
               chr11:8555819-8555692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               101
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               71, 18
               

               Conread position:
               104-279
               

               Cow position:
               chr11:76534067-76534239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               130
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               30, 60
               

               Conread position:
               104-282
               

               Cow position:
               chr11:21512281-21512454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               46, 29
               

               Conread position:
               1-232
               

               Cow position:
               chr12:5573664-5573422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               16, 105
               

               Conread position:
               3-221
               

               Cow position:
               chr12:3366401-3366175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               71, 19
               

               Conread position:
               3-274
               

               Cow position:
               chr12:24572204-24571923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               213
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               70, 102
               

               Conread position:
               5-232
               

               Cow position:
               chr12:28243791-28244033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               63, 233
               

               Conread position:
               10-229
               

               Cow position:
               chr12:8645480-8645250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               68, 193
               

               Conread position:
               13-232
               

               Cow position:
               chr12:17709858-17710080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               60, 91
               

               Conread position:
               123-281
               

               Cow position:
               chr12:15737207-15737363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               27, 34
               

               Conread position:
               1-217
               

               Cow position:
               chr13:21955919-21955700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               21, 120
               

               Conread position:
               1-229
               

               Cow position:
               chr13:16541517-16541746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               173
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               68, 8
               

               Conread position:
               1-232
               

               Cow position:
               chr13:499014-498774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               78, 215
               

               Conread position:
               1-233
               

               Cow position:
               chr13:9893458-9893700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               185
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               78, 104
               

               Conread position:
               1-233
               

               Cow position:
               chr13:10418235-10418478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               181
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               81, 105
               

               Conread position:
               1-233
               

               Cow position:
               chr13:23498710-23498467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               72, 104
               

               Conread position:
               4-210
               

               Cow position:
               chr13:2555453-2555228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               69, 100
               

               Conread position:
               9-239
               

               Cow position:
               chr13:27859968-27859730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               71, 92
               

               Conread position:
               13-244
               

               Cow position:
               chr13:51122455-51122227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               66, 28
               

               Conread position:
               13-250
               

               Cow position:
               chr13:16035554-16035313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               65, 90
               

               Conread position:
               19-277
               

               Cow position:
               chr13:10042635-10042367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 87
               

               Conread position:
               27-282
               

               Cow position:
               chr13:22472356-22472102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 72
               

               Conread position:
               77-211
               

               Cow position:
               chr13:9864653-9864519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               81-233
               

               Cow position:
               chr13:50639583-50639736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               101-232
               

               Cow position:
               chr13:10386622-10386754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               104
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               24, 17
               

               Conread position:
               104-324
               

               Cow position:
               chr13:33471698-33471919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               46, 29
               

               Conread position:
               3-221
               

               Cow position:
               chr14:29181807-29182035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               70, 101
               

               Conread position:
               13-232
               

               Cow position:
               chr14:47598082-47598309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               164
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               63, 92
               

               Conread position:
               13-324
               

               Cow position:
               chr14:49056510-49056824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 206
               

               Conread position:
               23-231
               

               Cow position:
               chr14:1993541-1993330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               57, 75
               

               Conread position:
               1-324
               

               Cow position:
               chr15:4547809-4547486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 93
               

               Conread position:
               2-320
               

               Cow position:
               chr15:10499714-10500034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 93
               

               Conread position:
               3-232
               

               Cow position:
               chr15:7864989-7865228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               70, 102
               

               Conread position:
               9-232
               

               Cow position:
               chr15:29929695-29929475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               75, 95
               

               Conread position:
               10-281
               

               Cow position:
               chr15:8534238-8533971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 86
               

               Conread position:
               13-231
               

               Cow position:
               chr15:695121-695348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               66, 92
               

               Conread position:
               13-233
               

               Cow position:
               chr15:4312247-4312027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               63, 35
               

               Conread position:
               13-283
               

               Cow position:
               chr15:29930919-29930636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               211
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               70, 97
               

               Conread position:
               15-232
               

               Cow position:
               chr15:20550491-20550717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               54, 91
               

               Conread position:
               31-324
               

               Cow position:
               chr15:10033373-10033064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 7
               

               Conread position:
               78-202
               

               Cow position:
               chr15:29927754-29927631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               104
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               72, 17
               

               Conread position:
               93-231
               

               Cow position:
               chr15:50258995-50258856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               106
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               58, 81
               

               Conread position:
               93-232
               

               Cow position:
               chr15:50275898-50276037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               43, 39
               

               Conread position:
               1-93
               

               Cow position:
               chr16:15227804-15227712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               93
               

               Alignm identity:
               79
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-324
               

               Cow position:
               chr16:9479988-9479686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               276, 65
               

               Conread position:
               9-233
               

               Cow position:
               chr16:48940533-48940768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               66, 165
               

               Conread position:
               13-232
               

               Cow position:
               chr16:9749520-9749739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               65, 116
               

               Conread position:
               15-231
               

               Cow position:
               chr16:19463974-19463762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               136, 85
               

               Conread position:
               16-232
               

               Cow position:
               chr16:9521781-9522005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               57, 89
               

               Conread position:
               20-314
               

               Cow position:
               chr16:31533060-31533366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               219
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               25, 32
               

               Conread position:
               73-281
               

               Cow position:
               chr16:54481091-54481299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               77, 21
               

               Conread position:
               77-233
               

               Cow position:
               chr16:34136345-34136500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               121
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               58, 18
               

               Conread position:
               79-216
               

               Cow position:
               chr16:6532027-6531890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               71, 20
               

               Conread position:
               84-210
               

               Cow position:
               chr16:4442851-4442979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               99
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               96-323
               

               Cow position:
               chr16:15227207-15226986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               56, 65
               

               Conread position:
               1-191
               

               Cow position:
               chr17:30006186-30005991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               74, 39
               

               Conread position:
               1-232
               

               Cow position:
               chr17:24866520-24866760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               187
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               74, 44
               

               Conread position:
               5-224
               

               Cow position:
               chr17:20924900-20925121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               75, 34
               

               Conread position:
               13-223
               

               Cow position:
               chr17:37371774-37371553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               77-233
               

               Cow position:
               chr17:34950857-34951016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               133
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               90-324
               

               Cow position:
               chr17:41782966-41783217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               10, 115
               

               Conread position:
               152-324
               

               Cow position:
               chr17:35463931-35463761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               30, 67
               

               Conread position:
               1-268
               

               Cow position:
               chr18:39037974-39038256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               74, 236
               

               Conread position:
               1-324
               

               Cow position:
               chr18:30510170-30509847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 89
               

               Conread position:
               2-258
               

               Cow position:
               chr18:3326899-3327157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 92
               

               Conread position:
               3-203
               

               Cow position:
               chr18:39133464-39133258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               79, 41
               

               Conread position:
               3-277
               

               Cow position:
               chr18:25132029-25132314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               212
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               69, 110
               

               Conread position:
               5-219
               

               Cow position:
               chr18:45616410-45616185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               65, 102
               

               Conread position:
               5-234
               

               Cow position:
               chr18:30346824-30346586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               73, 227
               

               Conread position:
               5-324
               

               Cow position:
               chr18:11417304-11417620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 41
               

               Conread position:
               10-323
               

               Cow position:
               chr18:22058825-22058507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 84
               

               Conread position:
               13-233
               

               Cow position:
               chr18:35039652-35039879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               67, 20
               

               Conread position:
               20-197
               

               Cow position:
               chr18:39044000-39044189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               79-232
               

               Cow position:
               chr18:4468559-4468408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               72, 21
               

               Conread position:
               104-282
               

               Cow position:
               chr18:9921808-9921983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               47, 33
               

               Conread position:
               1-210
               

               Cow position:
               chr19:29084125-29084345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               74, 8
               

               Conread position:
               1-232
               

               Cow position:
               chr19:10604329-10604558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               149, 41
               

               Conread position:
               1-324
               

               Cow position:
               chr19:56171212-56171551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 104
               

               Conread position:
               9-232
               

               Cow position:
               chr19:22812519-22812736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               66, 58
               

               Conread position:
               13-207
               

               Cow position:
               chr19:10135955-10136160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               13-232
               

               Cow position:
               chr19:22463819-22463591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               65, 92
               

               Conread position:
               13-246
               

               Cow position:
               chr19:5346304-5346060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               66, 38
               

               Conread position:
               79-232
               

               Cow position:
               chr19:7393690-7393538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               114
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               71, 16
               

               Conread position:
               1-222
               

               Cow position:
               chr2:46603328-46603560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               76, 103
               

               Conread position:
               1-232
               

               Cow position:
               chr2:68605843-68605606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               17, 51
               

               Conread position:
               1-233
               

               Cow position:
               chr2:42231818-42231575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               72, 104
               

               Conread position:
               1-233
               

               Cow position:
               chr2:72618391-72618633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               39, 47
               

               Conread position:
               1-282
               

               Cow position:
               chr2:41328819-41329120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 94
               

               Conread position:
               3-228
               

               Cow position:
               chr2:6724216-6724450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               11, 128
               

               Conread position:
               6-232
               

               Cow position:
               chr2:35860226-35860449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               69, 90
               

               Conread position:
               13-209
               

               Cow position:
               chr2:41128712-41128506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               60, 93
               

               Conread position:
               13-239
               

               Cow position:
               chr2:42655497-42655736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               180
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               62, 225
               

               Conread position:
               13-249
               

               Cow position:
               chr2:55872074-55872316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               67, 219
               

               Conread position:
               14-246
               

               Cow position:
               chr2:46220727-46220965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               59, 91
               

               Conread position:
               15-232
               

               Cow position:
               chr2:67248099-67247874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               28, 95
               

               Conread position:
               69-280
               

               Cow position:
               chr2:46275645-46275852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               153
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               83, 26
               

               Conread position:
               77-324
               

               Cow position:
               chr2:40049795-40049545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               195
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               74, 18
               

               Conread position:
               78-229
               

               Cow position:
               chr2:82153011-82152860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               73, 22
               

               Conread position:
               104-281
               

               Cow position:
               chr2:40737804-40737633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               130
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               46, 18
               

               Conread position:
               104-282
               

               Cow position:
               chr2:37731477-37731304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               46, 22
               

               Conread position:
               133-282
               

               Cow position:
               chr2:46296879-46296732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               18, 68
               

               Conread position:
               134-324
               

               Cow position:
               chr2:50542174-50541979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               17, 29
               

               Conread position:
               1-324
               

               Cow position:
               chr20:30707362-30707684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 93
               

               Conread position:
               2-210
               

               Cow position:
               chr20:29933019-29932822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               17, 94
               

               Conread position:
               2-221
               

               Cow position:
               chr20:40437418-40437633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               147, 14
               

               Conread position:
               10-191
               

               Cow position:
               chr20:7394813-7395005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               69, 95
               

               Conread position:
               13-230
               

               Cow position:
               chr20:39688349-39688118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               66, 201
               

               Conread position:
               13-282
               

               Cow position:
               chr20:40436608-40436869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               113, 61
               

               Conread position:
               13-324
               

               Cow position:
               chr20:7161302-7160974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 93
               

               Conread position:
               2-220
               

               Cow position:
               chr21:39327354-39327582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               76, 103
               

               Conread position:
               5-232
               

               Cow position:
               chr21:39684412-39684197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               145, 78
               

               Conread position:
               9-277
               

               Cow position:
               chr21:19781526-19781787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               205
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               66, 7
               

               Conread position:
               79-194
               

               Cow position:
               chr21:26513778-26513665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               93
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               72, 37
               

               Conread position:
               1-200
               

               Cow position:
               chr22:14197095-14196896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               147, 93
               

               Conread position:
               1-217
               

               Cow position:
               chr22:27864518-27864728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               74, 29
               

               Conread position:
               1-324
               

               Cow position:
               chr22:29432331-29432003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 40
               

               Conread position:
               2-230
               

               Cow position:
               chr22:10222348-10222590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               2-273
               

               Cow position:
               chr22:8471849-8471589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               7-308
               

               Cow position:
               chr22:15634417-15634723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               66, 206
               

               Conread position:
               10-232
               

               Cow position:
               chr22:36606571-36606347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               63, 95
               

               Conread position:
               13-219
               

               Cow position:
               chr22:27707622-27707837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               64, 91
               

               Conread position:
               13-232
               

               Cow position:
               chr22:6760412-6760175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               66, 216
               

               Conread position:
               13-232
               

               Cow position:
               chr22:17857498-17857269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               62, 92
               

               Conread position:
               13-259
               

               Cow position:
               chr22:7886643-7886883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               185
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               137, 61
               

               Conread position:
               16-232
               

               Cow position:
               chr22:1635835-1636054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               56, 115
               

               Conread position:
               77-324
               

               Cow position:
               chr22:27706292-27706526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               73, 18
               

               Conread position:
               1-155
               

               Cow position:
               chr23:24747996-24748143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               123
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               112, 72
               

               Conread position:
               1-189
               

               Cow position:
               chr23:2328003-2327805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               78, 104
               

               Conread position:
               1-189
               

               Cow position:
               chr23:22716802-22716606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               1-221
               

               Cow position:
               chr23:29031037-29030817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               75, 12
               

               Conread position:
               1-278
               

               Cow position:
               chr23:4113354-4113629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 93
               

               Conread position:
               1-284
               

               Cow position:
               chr23:30853566-30853840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 49
               

               Conread position:
               1-324
               

               Cow position:
               chr23:3227995-3227672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 221
               

               Conread position:
               1-324
               

               Cow position:
               chr23:3295203-3294883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 93
               

               Conread position:
               3-221
               

               Cow position:
               chr23:269956-269726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               12, 101
               

               Conread position:
               3-324
               

               Cow position:
               chr23:1142356-1142030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 91
               

               Conread position:
               9-233
               

               Cow position:
               chr23:8954766-8954996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               64, 94
               

               Conread position:
               13-232
               

               Cow position:
               chr23:31627708-31627479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               66, 96
               

               Conread position:
               14-232
               

               Cow position:
               chr23:6231872-6232101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               50, 220
               

               Conread position:
               56-227
               

               Cow position:
               chr23:14139310-14139136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               19, 44
               

               Conread position:
               66-256
               

               Cow position:
               chr23:38665439-38665253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               138
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               15, 27
               

               Conread position:
               77-324
               

               Cow position:
               chr23:38357100-38356860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               198
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               150, 18
               

               Conread position:
               1-156
               

               Cow position:
               chr24:13915632-13915477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               149, 93
               

               Conread position:
               1-281
               

               Cow position:
               chr24:18383781-18383512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 93
               

               Conread position:
               3-250
               

               Cow position:
               chr24:43623083-43622831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               12, 104
               

               Conread position:
               8-228
               

               Cow position:
               chr24:171755-171535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               19, 92
               

               Conread position:
               10-324
               

               Cow position:
               chr24:27477901-27477570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 96
               

               Conread position:
               13-234
               

               Cow position:
               chr24:15802665-15802436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               63, 92
               

               Conread position:
               77-198
               

               Cow position:
               chr24:15074779-15074900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               99
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               73, 18
               

               Conread position:
               77-216
               

               Cow position:
               chr24:21620172-21620036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               109
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               61, 15
               

               Conread position:
               78-282
               

               Cow position:
               chr24:16505228-16505028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               163
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               42, 14
               

               Conread position:
               99-230
               

               Cow position:
               chr24:42211023-42211152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               102
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               52, 47
               

               Conread position:
               104-280
               

               Cow position:
               chr24:44382127-44381950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               48, 90
               

               Conread position:
               104-324
               

               Cow position:
               chr24:33070682-33070905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               47, 23
               

               Conread position:
               1-283
               

               Cow position:
               chr25:26147042-26147330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 173
               

               Conread position:
               5-231
               

               Cow position:
               chr25:17720773-17720535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               70, 94
               

               Conread position:
               13-195
               

               Cow position:
               chr25:36544449-36544642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               146
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               65, 163
               

               Conread position:
               13-210
               

               Cow position:
               chr25:36054463-36054666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               62, 135
               

               Conread position:
               13-220
               

               Cow position:
               chr25:20588401-20588615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               13-232
               

               Cow position:
               chr25:20280515-20280738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               65, 92
               

               Conread position:
               16-282
               

               Cow position:
               chr25:6129286-6129015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               201
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               63, 24
               

               Conread position:
               77-209
               

               Cow position:
               chr25:36128279-36128411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               73, 18
               

               Conread position:
               3-322
               

               Cow position:
               chr26:34142688-34143015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               240
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               70, 100
               

               Conread position:
               13-230
               

               Cow position:
               chr26:28241751-28241978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               66, 92
               

               Conread position:
               15-324
               

               Cow position:
               chr26:13079175-13078856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 88
               

               Conread position:
               79-233
               

               Cow position:
               chr26:20535057-20535210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               72, 16
               

               Conread position:
               1-221
               

               Cow position:
               chr27:17953555-17953785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               32, 12
               

               Conread position:
               1-232
               

               Cow position:
               chr27:25072374-25072617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               187
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               11, 45
               

               Conread position:
               1-270
               

               Cow position:
               chr27:926198-926463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 61
               

               Conread position:
               1-324
               

               Cow position:
               chr27:25387184-25387520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 44
               

               Conread position:
               8-324
               

               Cow position:
               chr27:31216866-31216535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 5
               

               Conread position:
               13-221
               

               Cow position:
               chr27:30891313-30891531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               60, 92
               

               Conread position:
               15-232
               

               Cow position:
               chr27:25033095-25032876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               58, 30
               

               Conread position:
               15-232
               

               Cow position:
               chr27:25390347-25390581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               60, 30
               

               Conread position:
               24-281
               

               Cow position:
               chr27:27561007-27561258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               191
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               126, 53
               

               Conread position:
               1-181
               

               Cow position:
               chr28:7629151-7628960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               78, 104
               

               Conread position:
               1-231
               

               Cow position:
               chr28:18603744-18603515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               150, 81
               

               Conread position:
               1-234
               

               Cow position:
               chr28:5861901-5862145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               26, 14
               

               Conread position:
               1-324
               

               Cow position:
               chr28:7624175-7623851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 93
               

               Conread position:
               3-229
               

               Cow position:
               chr28:4216955-4217186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               12, 89
               

               Conread position:
               3-231
               

               Cow position:
               chr28:3702491-3702724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               76, 19
               

               Conread position:
               4-234
               

               Cow position:
               chr28:10199779-10199547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               37, 80
               

               Conread position:
               10-245
               

               Cow position:
               chr28:11266449-11266203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               70, 101
               

               Conread position:
               10-281
               

               Cow position:
               chr28:29648174-29648421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               196
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               257, 69
               

               Conread position:
               13-232
               

               Cow position:
               chr28:732636-732859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               179
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               60, 34
               

               Conread position:
               13-245
               

               Cow position:
               chr28:5218983-5219222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               67, 96
               

               Conread position:
               85-231
               

               Cow position:
               chr28:5232150-5232291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               111
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               65, 7
               

               Conread position:
               1-214
               

               Cow position:
               chr29:3750076-3750299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               72, 58
               

               Conread position:
               1-232
               

               Cow position:
               chr29:10124879-10124656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               112, 38
               

               Conread position:
               1-239
               

               Cow position:
               chr29:9308503-9308749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               72, 207
               

               Conread position:
               1-280
               

               Cow position:
               chr29:26426067-26425777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               221
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               28, 182
               

               Conread position:
               5-187
               

               Cow position:
               chr29:7593824-7593643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               126, 69
               

               Conread position:
               5-234
               

               Cow position:
               chr29:905935-906174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               63, 229
               

               Conread position:
               13-216
               

               Cow position:
               chr29:1499913-1499692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               57, 93
               

               Conread position:
               13-221
               

               Cow position:
               chr29:17613461-17613656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               145, 32
               

               Conread position:
               13-230
               

               Cow position:
               chr29:915890-916116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               60, 92
               

               Conread position:
               13-237
               

               Cow position:
               chr29:890705-890934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               66, 194
               

               Conread position:
               104-324
               

               Cow position:
               chr29:12772934-12773154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               48, 59
               

               Conread position:
               1-91
               

               Cow position:
               chr3:60009442-60009352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               91
               

               Alignm identity:
               80
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-233
               

               Cow position:
               chr3:71209260-71209506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               44, 108
               

               Conread position:
               1-265
               

               Cow position:
               chr3:58549318-58549563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               121, 93
               

               Conread position:
               1-278
               

               Cow position:
               chr3:83488942-83489225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 104
               

               Conread position:
               1-322
               

               Cow position:
               chr3:60026600-60026282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               255, 21
               

               Conread position:
               1-324
               

               Cow position:
               chr3:31815708-31816032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 63
               

               Conread position:
               2-232
               

               Cow position:
               chr3:60013142-60012916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               150, 40
               

               Conread position:
               3-237
               

               Cow position:
               chr3:83962983-83963227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               70, 16
               

               Conread position:
               3-257
               

               Cow position:
               chr3:81267413-81267152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 10
               

               Conread position:
               5-221
               

               Cow position:
               chr3:12129889-12130116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               175
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               73, 100
               

               Conread position:
               13-162
               

               Cow position:
               chr3:83965006-83964849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               13-230
               

               Cow position:
               chr3:59559877-59560104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               62, 92
               

               Conread position:
               13-250
               

               Cow position:
               chr3:66133264-66133513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               21, 94
               

               Conread position:
               13-324
               

               Cow position:
               chr3:58244885-58244582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               229
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               138, 60
               

               Conread position:
               27-283
               

               Cow position:
               chr3:29144744-29145009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               195
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               52, 207
               

               Conread position:
               78-231
               

               Cow position:
               chr3:39155443-39155291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               73, 22
               

               Conread position:
               83-324
               

               Cow position:
               chr3:60009227-60008987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               183
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               68, 12
               

               Conread position:
               104-324
               

               Cow position:
               chr3:35958366-35958591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               47, 59
               

               Conread position:
               1-233
               

               Cow position:
               chr4:13986610-13986847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               180
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               52, 101
               

               Conread position:
               1-250
               

               Cow position:
               chr4:44715952-44716202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               78, 104
               

               Conread position:
               8-281
               

               Cow position:
               chr4:63072819-63072550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               203
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               42, 5
               

               Conread position:
               9-231
               

               Cow position:
               chr4:5845824-5845598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               75, 218
               

               Conread position:
               13-232
               

               Cow position:
               chr4:35530958-35531178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               70, 38
               

               Conread position:
               13-282
               

               Cow position:
               chr4:352552-352824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               207
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               59, 97
               

               Conread position:
               104-320
               

               Cow position:
               chr4:52274936-52275156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               46, 29
               

               Conread position:
               1-210
               

               Cow position:
               chr5:38410752-38410953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               149, 72
               

               Conread position:
               1-221
               

               Cow position:
               chr5:50225881-50226112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               72, 104
               

               Conread position:
               1-282
               

               Cow position:
               chr5:75183796-75183515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               115, 84
               

               Conread position:
               2-232
               

               Cow position:
               chr5:17682793-17682551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               77, 103
               

               Conread position:
               3-232
               

               Cow position:
               chr5:58760731-58760971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               184
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               70, 102
               

               Conread position:
               4-277
               

               Cow position:
               chr5:48193664-48193930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 50
               

               Conread position:
               13-197
               

               Cow position:
               chr5:43115462-43115656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               13-204
               

               Cow position:
               chr5:69535218-69535017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               45, 97
               

               Conread position:
               13-220
               

               Cow position:
               chr5:44551904-44552104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               51, 61
               

               Conread position:
               13-322
               

               Cow position:
               chr5:56621400-56621728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 13
               

               Conread position:
               15-282
               

               Cow position:
               chr5:47859129-47859393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 78
               

               Conread position:
               47-251
               

               Cow position:
               chr5:57083104-57083304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               180, 26
               

               Conread position:
               79-231
               

               Cow position:
               chr5:43440585-43440734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               71, 16
               

               Conread position:
               95-222
               

               Cow position:
               chr5:23758189-23758061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               100
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               106-324
               

               Cow position:
               chr5:48191071-48190848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               44, 85
               

               Conread position:
               1-273
               

               Cow position:
               chr6:18729876-18729608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 94
               

               Conread position:
               9-249
               

               Cow position:
               chr6:14916751-14916507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               32, 98
               

               Conread position:
               13-219
               

               Cow position:
               chr6:30505164-30504971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               137, 62
               

               Conread position:
               26-283
               

               Cow position:
               chr6:12561655-12561896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               141, 15
               

               Conread position:
               31-232
               

               Cow position:
               chr6:61124303-61124093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               47, 41
               

               Conread position:
               1-130
               

               Cow position:
               chr7:3160818-3160690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               105
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               3-233
               

               Cow position:
               chr7:10510547-10510308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               72, 102
               

               Conread position:
               5-229
               

               Cow position:
               chr7:48660445-48660666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               145, 77
               

               Conread position:
               10-324
               

               Cow position:
               chr7:53498786-53498457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 224
               

               Conread position:
               13-201
               

               Cow position:
               chr7:61700386-61700582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               67, 92
               

               Conread position:
               13-231
               

               Cow position:
               chr7:53487209-53486985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               63, 90
               

               Conread position:
               13-281
               

               Cow position:
               chr7:32892307-32892033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 93
               

               Conread position:
               79-210
               

               Cow position:
               chr7:61428569-61428699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               105
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               71, 13
               

               Conread position:
               93-229
               

               Cow position:
               chr7:23566607-23566470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               108
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               58, 131
               

               Conread position:
               1-282
               

               Cow position:
               chr8:42400059-42400345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 93
               

               Conread position:
               3-233
               

               Cow position:
               chr8:4332682-4332923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               12, 17
               

               Conread position:
               5-324
               

               Cow position:
               chr8:8379514-8379192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 154
               

               Conread position:
               6-324
               

               Cow position:
               chr8:51492494-51492179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 16
               

               Conread position:
               10-232
               

               Cow position:
               chr8:6226203-6225973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               64, 107
               

               Conread position:
               13-232
               

               Cow position:
               chr8:8381526-8381756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               60, 92
               

               Conread position:
               13-232
               

               Cow position:
               chr8:44021602-44021831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               66, 92
               

               Conread position:
               82-233
               

               Cow position:
               chr8:3399042-3398891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               68, 13
               

               Conread position:
               104-282
               

               Cow position:
               chr8:26229735-26229562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               46, 29
               

               Conread position:
               10-232
               

               Cow position:
               chr9:3704807-3704576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               182
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               65, 96
               

               Conread position:
               13-229
               

               Cow position:
               chr9:1836458-1836232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               60, 92
               

               Conread position:
               13-232
               

               Cow position:
               chr9:53498238-53498465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               62, 93
               

               Conread position:
               13-233
               

               Cow position:
               chr9:34887250-34887483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               60, 91
               

               Conread position:
               13-250
               

               Cow position:
               chr9:3879932-3879689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               65, 92
               

               Conread position:
               13-259
               

               Cow position:
               chr9:1926120-1925869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               197
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               66, 92
               

               Conread position:
               15-232
               

               Cow position:
               chr9:8936698-8936469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               60, 89
               

               Conread position:
               17-232
               

               Cow position:
               chr9:8874761-8874544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               58, 108
               

               Conread position:
               77-221
               

               Cow position:
               chr9:7872373-7872228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               60, 18
               

               Conread position:
               109-324
               

               Cow position:
               chr9:24593632-24593421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               43, 18
               

               Conread position:
               118-282
               

               Cow position:
               chr9:2377159-2376998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               120
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               32, 105
               

               Conread position:
               1-282
               

               Cow position:
               chrX:48184307-48184016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               213
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               77, 104
               

               Conread position:
               3-277
               

               Cow position:
               chrX:47163454-47163172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               215
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               72, 58
               

               Conread position:
               9-220
               

               Cow position:
               chrX:31349769-31349547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               70, 0
Conread position:	1-218
Cow position:	chr1:102505593-102505811 (view UCSC Genome Browser custom track)
Alignm length:	222
Alignm identity:	176
Alignm E-value:	0
Alignm gaps (pig, cow):	114, 92
Conread position:	1-220
Cow position:	chr1:79743283-79743513 (view UCSC Genome Browser custom track)
Alignm length:	232
Alignm identity:	169
Alignm E-value:	1e-33
Alignm gaps (pig, cow):	78, 105
Conread position:	1-224
Cow position:	chr1:52394234-52394013 (view UCSC Genome Browser custom track)
Alignm length:	225
Alignm identity:	182
Alignm E-value:	0
Alignm gaps (pig, cow):	150, 93
Conread position:	1-283
Cow position:	chr1:52388884-52388596 (view UCSC Genome Browser custom track)
Alignm length:	292
Alignm identity:	215
Alignm E-value:	0
Alignm gaps (pig, cow):	149, 218
Conread position:	1-324
Cow position:	chr1:26406842-26406512 (view UCSC Genome Browser custom track)
Alignm length:	334
Alignm identity:	243
Alignm E-value:	0
Alignm gaps (pig, cow):	149, 93
Conread position:	4-233
Cow position:	chr1:79626896-79626673 (view UCSC Genome Browser custom track)
Alignm length:	233
Alignm identity:	168
Alignm E-value:	7e-30
Alignm gaps (pig, cow):	131, 78
Conread position:	5-220
Cow position:	chr1:49739062-49739273 (view UCSC Genome Browser custom track)
Alignm length:	217
Alignm identity:	162
Alignm E-value:	5e-37
Alignm gaps (pig, cow):	145, 89
Conread position:	5-233
Cow position:	chr1:17488351-17488112 (view UCSC Genome Browser custom track)
Alignm length:	242
Alignm identity:	179
Alignm E-value:	1e-34
Alignm gaps (pig, cow):	46, 102
Conread position:	8-216
Cow position:	chr1:12040477-12040682 (view UCSC Genome Browser custom track)
Alignm length:	214
Alignm identity:	154
Alignm E-value:	1e-23
Alignm gaps (pig, cow):	66, 7
Conread position:	9-230
Cow position:	chr1:42182389-42182620 (view UCSC Genome Browser custom track)
Alignm length:	234
Alignm identity:	174
Alignm E-value:	2e-36
Alignm gaps (pig, cow):	69, 96
Conread position:	13-232
Cow position:	chr1:92612383-92612611 (view UCSC Genome Browser custom track)
Alignm length:	233
Alignm identity:	165
Alignm E-value:	4e-25
Alignm gaps (pig, cow):	58, 129
Conread position:	13-233
Cow position:	chr1:87946743-87946512 (view UCSC Genome Browser custom track)
Alignm length:	233
Alignm identity:	169
Alignm E-value:	3e-31
Alignm gaps (pig, cow):	65, 56
Conread position:	13-324
Cow position:	chr1:5192347-5192031 (view UCSC Genome Browser custom track)
Alignm length:	333
Alignm identity:	232
Alignm E-value:	2e-29
Alignm gaps (pig, cow):	63, 11
Conread position:	15-233
Cow position:	chr1:100754006-100753778 (view UCSC Genome Browser custom track)
Alignm length:	231
Alignm identity:	164
Alignm E-value:	6e-28
Alignm gaps (pig, cow):	12, 38
Conread position:	63-280
Cow position:	chr1:98297147-98296939 (view UCSC Genome Browser custom track)
Alignm length:	219
Alignm identity:	162
Alignm E-value:	9e-32
Alignm gaps (pig, cow):	87, 17
Conread position:	77-219
Cow position:	chr1:32350677-32350538 (view UCSC Genome Browser custom track)
Alignm length:	144
Alignm identity:	114
Alignm E-value:	2e-26
Alignm gaps (pig, cow):	75, 18
Conread position:	77-232
Cow position:	chr1:82516015-82516169 (view UCSC Genome Browser custom track)
Alignm length:	157
Alignm identity:	121
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	73, 18
Conread position:	79-195
Cow position:	chr1:39506771-39506654 (view UCSC Genome Browser custom track)
Alignm length:	118
Alignm identity:	94
Alignm E-value:	3e-23
Alignm gaps (pig, cow):	69, 0
Conread position:	104-282
Cow position:	chr1:29838146-29838316 (view UCSC Genome Browser custom track)
Alignm length:	180
Alignm identity:	130
Alignm E-value:	8e-21
Alignm gaps (pig, cow):	46, 29
Conread position:	1-277
Cow position:	chr10:35729177-35729440 (view UCSC Genome Browser custom track)
Alignm length:	278
Alignm identity:	211
Alignm E-value:	0
Alignm gaps (pig, cow):	149, 25