Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig3-SRG8006P11.3
        

               Conread position:
               43-334
               

               Cow position:
               chr1:48454521-48454226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               31, 7
               

               Conread position:
               43-367
               

               Cow position:
               chr1:73744733-73745070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               235
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               44, 5
               

               Conread position:
               50-382
               

               Cow position:
               chr1:95069651-95069305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               42, 137
               

               Conread position:
               54-381
               

               Cow position:
               chr1:32906326-32906668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               43, 31
               

               Conread position:
               61-378
               

               Cow position:
               chr1:49435389-49435063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               221
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               17, 65
               

               Conread position:
               62-368
               

               Cow position:
               chr1:2427291-2426978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               206
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               29, 100
               

               Conread position:
               74-372
               

               Cow position:
               chr1:93796002-93795699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               73, 38
               

               Conread position:
               75-378
               

               Cow position:
               chr1:58873750-58874064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               218
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               72, 146
               

               Conread position:
               75-380
               

               Cow position:
               chr1:67651459-67651140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               229
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               14, 37
               

               Conread position:
               76-354
               

               Cow position:
               chr1:77723708-77723420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               203
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               67, 33
               

               Conread position:
               76-358
               

               Cow position:
               chr1:63085582-63085879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               71, 24
               

               Conread position:
               76-372
               

               Cow position:
               chr1:43820543-43820240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               209
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               71, 156
               

               Conread position:
               76-383
               

               Cow position:
               chr1:50874169-50874480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               47, 13
               

               Conread position:
               77-347
               

               Cow position:
               chr1:3408512-3408790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               66, 109
               

               Conread position:
               77-368
               

               Cow position:
               chr1:35756233-35756529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               188
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               78, 123
               

               Conread position:
               79-378
               

               Cow position:
               chr1:74014665-74014348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               216
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               68, 264
               

               Conread position:
               81-369
               

               Cow position:
               chr1:2962594-2962881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               7, 112
               

               Conread position:
               84-376
               

               Cow position:
               chr1:62623696-62623991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               67, 117
               

               Conread position:
               84-378
               

               Cow position:
               chr1:56821215-56820904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               210
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               63, 117
               

               Conread position:
               87-326
               

               Cow position:
               chr1:57042756-57042993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               113, 54
               

               Conread position:
               87-330
               

               Cow position:
               chr1:35559908-35560156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               60, 135
               

               Conread position:
               87-347
               

               Cow position:
               chr1:90683061-90682797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               59, 92
               

               Conread position:
               87-353
               

               Cow position:
               chr1:54410543-54410276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               12, 230
               

               Conread position:
               87-362
               

               Cow position:
               chr1:15514443-15514728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               195
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               8, 20
               

               Conread position:
               87-368
               

               Cow position:
               chr1:60282616-60282908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               59, 115
               

               Conread position:
               87-372
               

               Cow position:
               chr1:100950566-100950281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               78, 29
               

               Conread position:
               87-373
               

               Cow position:
               chr1:32774981-32774688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               198
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               58, 34
               

               Conread position:
               87-380
               

               Cow position:
               chr1:73659452-73659754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               76, 70
               

               Conread position:
               87-383
               

               Cow position:
               chr1:2064587-2064286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               203
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               58, 124
               

               Conread position:
               87-384
               

               Cow position:
               chr1:53008852-53008542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               15, 109
               

               Conread position:
               87-384
               

               Cow position:
               chr1:83055160-83055453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               60, 26
               

               Conread position:
               87-393
               

               Cow position:
               chr1:7390304-7389987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               218
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               60, 120
               

               Conread position:
               88-345
               

               Cow position:
               chr1:100818150-100817892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               58, 98
               

               Conread position:
               88-352
               

               Cow position:
               chr1:30559833-30559551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               57, 91
               

               Conread position:
               88-359
               

               Cow position:
               chr1:77777026-77777301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               194
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               57, 28
               

               Conread position:
               88-367
               

               Cow position:
               chr1:45233361-45233648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               37, 133
               

               Conread position:
               88-373
               

               Cow position:
               chr1:32700859-32700582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               58, 114
               

               Conread position:
               88-373
               

               Cow position:
               chr1:54480492-54480792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               24, 213
               

               Conread position:
               88-373
               

               Cow position:
               chr1:102272343-102272050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               202
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               59, 19
               

               Conread position:
               88-378
               

               Cow position:
               chr1:83481012-83480716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               199
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               59, 151
               

               Conread position:
               88-379
               

               Cow position:
               chr1:37259459-37259167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               192
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               56, 94
               

               Conread position:
               88-394
               

               Cow position:
               chr1:72287913-72288231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               227
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               59, 88
               

               Conread position:
               89-346
               

               Cow position:
               chr1:96189996-96189726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               13, 114
               

               Conread position:
               89-367
               

               Cow position:
               chr1:82386182-82385893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               57, 254
               

               Conread position:
               89-400
               

               Cow position:
               chr1:42742364-42742042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               222
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               24, 111
               

               Conread position:
               90-338
               

               Cow position:
               chr1:66177664-66177909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               56, 36
               

               Conread position:
               90-358
               

               Cow position:
               chr1:33768089-33768347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               57, 14
               

               Conread position:
               90-359
               

               Cow position:
               chr1:37652995-37653267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               58, 120
               

               Conread position:
               90-366
               

               Cow position:
               chr1:56072251-56071982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               200
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               57, 92
               

               Conread position:
               90-376
               

               Cow position:
               chr1:73656238-73656536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               213
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               18, 24
               

               Conread position:
               90-381
               

               Cow position:
               chr1:73074140-73073850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               56, 6
               

               Conread position:
               91-378
               

               Cow position:
               chr1:4038581-4038297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               55, 161
               

               Conread position:
               92-362
               

               Cow position:
               chr1:87033239-87032971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               192
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               51, 110
               

               Conread position:
               92-408
               

               Cow position:
               chr1:63108222-63108551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               37, 124
               

               Conread position:
               93-342
               

               Cow position:
               chr1:51421862-51422116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               172
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               52, 122
               

               Conread position:
               100-378
               

               Cow position:
               chr1:227049-226767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               47, 106
               

               Conread position:
               101-368
               

               Cow position:
               chr1:102269969-102270249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               192
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               44, 83
               

               Conread position:
               102-377
               

               Cow position:
               chr1:52252139-52251866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               45, 28
               

               Conread position:
               111-369
               

               Cow position:
               chr1:45426453-45426183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               35, 167
               

               Conread position:
               112-384
               

               Cow position:
               chr1:65033215-65033493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               194
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               34, 14
               

               Conread position:
               114-342
               

               Cow position:
               chr1:36862132-36861905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               31, 88
               

               Conread position:
               115-345
               

               Cow position:
               chr1:25749729-25749500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               48, 86
               

               Conread position:
               141-376
               

               Cow position:
               chr1:33568294-33568054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               170
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               28, 19
               

               Conread position:
               148-365
               

               Cow position:
               chr1:83666671-83666456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               82, 28
               

               Conread position:
               148-377
               

               Cow position:
               chr1:2170554-2170326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               43, 55
               

               Conread position:
               148-378
               

               Cow position:
               chr1:26698480-26698718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               21, 187
               

               Conread position:
               148-384
               

               Cow position:
               chr1:55162212-55162452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               31, 49
               

               Conread position:
               148-389
               

               Cow position:
               chr1:277776-277543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               53, 106
               

               Conread position:
               152-381
               

               Cow position:
               chr1:94030143-94029909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               171
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               87, 45
               

               Conread position:
               157-362
               

               Cow position:
               chr1:46601182-46600969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               52, 83
               

               Conread position:
               157-378
               

               Cow position:
               chr1:42985130-42985349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               71, 112
               

               Conread position:
               161-362
               

               Cow position:
               chr1:43230405-43230200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               78, 154
               

               Conread position:
               162-377
               

               Cow position:
               chr1:73961336-73961115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               74, 34
               

               Conread position:
               166-380
               

               Cow position:
               chr1:18494917-18495131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               21, 102
               

               Conread position:
               176-368
               

               Cow position:
               chr1:15901834-15901651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               186-377
               

               Cow position:
               chr1:56029143-56028958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               53, 60
               

               Conread position:
               204-362
               

               Cow position:
               chr1:15933175-15933019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               27, 15
               

               Conread position:
               207-381
               

               Cow position:
               chr1:84734182-84734352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               213-374
               

               Cow position:
               chr1:71901200-71901042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               118
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               18, 6
               

               Conread position:
               215-368
               

               Cow position:
               chr1:23799122-23799274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               110
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               215-380
               

               Cow position:
               chr1:89406880-89407044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               20, 76
               

               Conread position:
               217-357
               

               Cow position:
               chr1:97885139-97885001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               218-380
               

               Cow position:
               chr1:15798432-15798593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               120
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               13, 68
               

               Conread position:
               220-361
               

               Cow position:
               chr1:98916083-98916220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               220-381
               

               Cow position:
               chr1:44092610-44092451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               118
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               11, 71
               

               Conread position:
               222-378
               

               Cow position:
               chr1:25915962-25916111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               115
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               223-354
               

               Cow position:
               chr1:51350927-51350795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               104
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               8, 106
               

               Conread position:
               223-380
               

               Cow position:
               chr1:69775565-69775411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               8, 108
               

               Conread position:
               224-352
               

               Cow position:
               chr1:26770472-26770599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               102
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               224-368
               

               Cow position:
               chr1:13922-14064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               229-377
               

               Cow position:
               chr1:273697-273552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               113
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               13, 62
               

               Conread position:
               229-378
               

               Cow position:
               chr1:78371942-78372088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               234-367
               

               Cow position:
               chr1:85376333-85376201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               104
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               77, 94
               

               Conread position:
               236-378
               

               Cow position:
               chr1:69332800-69332665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               109
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               241-382
               

               Cow position:
               chr1:35133544-35133405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               109
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               14, 29
               

               Conread position:
               246-381
               

               Cow position:
               chr1:14291403-14291270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               253-380
               

               Cow position:
               chr1:19297919-19298043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               100
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               257-362
               

               Cow position:
               chr1:44730502-44730606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               106
               

               Alignm identity:
               91
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               258-376
               

               Cow position:
               chr1:4750751-4750866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               94
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               263-378
               

               Cow position:
               chr1:55134410-55134297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               95
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               49, 27
               

               Conread position:
               263-378
               

               Cow position:
               chr1:78304925-78304810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               94
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               53, 102
               

               Conread position:
               267-408
               

               Cow position:
               chr1:19002010-19001870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               108
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               104, 59
               

               Conread position:
               271-378
               

               Cow position:
               chr1:74011331-74011223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               92
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               8-380
               

               Cow position:
               chr10:64457871-64457508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               243
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               121, 27
               

               Conread position:
               43-354
               

               Cow position:
               chr10:5827917-5827596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 7
               

               Conread position:
               50-367
               

               Cow position:
               chr10:13212757-13212434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               94, 42
               

               Conread position:
               60-379
               

               Cow position:
               chr10:60911301-60910982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               213
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               25, 234
               

               Conread position:
               61-354
               

               Cow position:
               chr10:56976178-56976472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               42, 34
               

               Conread position:
               62-378
               

               Cow position:
               chr10:55908840-55908513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               22, 49
               

               Conread position:
               75-335
               

               Cow position:
               chr10:52612453-52612720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               189
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               74, 14
               

               Conread position:
               75-387
               

               Cow position:
               chr10:40877222-40877548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               70, 230
               

               Conread position:
               76-347
               

               Cow position:
               chr10:69262885-69262604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               36, 98
               

               Conread position:
               79-368
               

               Cow position:
               chr10:51774550-51774831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               79-378
               

               Cow position:
               chr10:47555574-47555886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               49, 120
               

               Conread position:
               81-373
               

               Cow position:
               chr10:39147616-39147332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               212
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               64, 123
               

               Conread position:
               81-377
               

               Cow position:
               chr10:6906592-6906274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               8, 134
               

               Conread position:
               82-362
               

               Cow position:
               chr10:23851115-23851390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               197
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               135, 5
               

               Conread position:
               82-370
               

               Cow position:
               chr10:19599081-19599388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               65, 222
               

               Conread position:
               83-380
               

               Cow position:
               chr10:50094203-50094506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               213
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               65, 87
               

               Conread position:
               84-301
               

               Cow position:
               chr10:49197585-49197806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               63, 37
               

               Conread position:
               84-378
               

               Cow position:
               chr10:43697118-43697410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               61, 151
               

               Conread position:
               86-372
               

               Cow position:
               chr10:21408871-21408576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               203
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               60, 36
               

               Conread position:
               87-327
               

               Cow position:
               chr10:24879729-24879480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               56, 6
               

               Conread position:
               87-368
               

               Cow position:
               chr10:6636592-6636860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               87-380
               

               Cow position:
               chr10:45351870-45352173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               209
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               70, 209
               

               Conread position:
               87-383
               

               Cow position:
               chr10:30205105-30205408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               25, 210
               

               Conread position:
               87-392
               

               Cow position:
               chr10:59534100-59534402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               58, 116
               

               Conread position:
               88-326
               

               Cow position:
               chr10:37379824-37380072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               59, 118
               

               Conread position:
               88-345
               

               Cow position:
               chr10:29709531-29709265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               178
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               116, 185
               

               Conread position:
               88-348
               

               Cow position:
               chr10:27239615-27239367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               195
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               59, 111
               

               Conread position:
               88-411
               

               Cow position:
               chr10:1942531-1942858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               221
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               59, 111
               

               Conread position:
               89-334
               

               Cow position:
               chr10:11348825-11349075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               56, 6
               

               Conread position:
               89-362
               

               Cow position:
               chr10:45988833-45988562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               184
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               69, 153
               

               Conread position:
               89-380
               

               Cow position:
               chr10:17412178-17411878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               198
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               34, 17
               

               Conread position:
               90-354
               

               Cow position:
               chr10:3945277-3945547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               57, 113
               

               Conread position:
               90-362
               

               Cow position:
               chr10:20922354-20922074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               53, 23
               

               Conread position:
               90-373
               

               Cow position:
               chr10:24111896-24111609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               57, 80
               

               Conread position:
               90-381
               

               Cow position:
               chr10:43279412-43279709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               204
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               33, 119
               

               Conread position:
               93-384
               

               Cow position:
               chr10:52987606-52987911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               73, 103
               

               Conread position:
               93-389
               

               Cow position:
               chr10:10514504-10514803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               200
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               68, 18
               

               Conread position:
               93-389
               

               Cow position:
               chr10:33812221-33812520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               11, 34
               

               Conread position:
               98-340
               

               Cow position:
               chr10:9650162-9649911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               172
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               49, 181
               

               Conread position:
               100-366
               

               Cow position:
               chr10:55377472-55377752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               46, 22
               

               Conread position:
               100-384
               

               Cow position:
               chr10:62858085-62857796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               47, 226
               

               Conread position:
               103-380
               

               Cow position:
               chr10:500380-500656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               205
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               44, 99
               

               Conread position:
               122-378
               

               Cow position:
               chr10:7297161-7296913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               161, 10
               

               Conread position:
               139-382
               

               Cow position:
               chr10:23570153-23570403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               74, 37
               

               Conread position:
               148-361
               

               Cow position:
               chr10:476051-476261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               77, 43
               

               Conread position:
               148-362
               

               Cow position:
               chr10:7235762-7235556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               67, 49
               

               Conread position:
               148-365
               

               Cow position:
               chr10:54184664-54184883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               46, 181
               

               Conread position:
               148-368
               

               Cow position:
               chr10:65648151-65647925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               148-368
               

               Cow position:
               chr10:66056238-66056015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               83, 16
               

               Conread position:
               148-372
               

               Cow position:
               chr10:50579901-50579674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               51, 150
               

               Conread position:
               148-373
               

               Cow position:
               chr10:49202364-49202579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               57, 17
               

               Conread position:
               148-378
               

               Cow position:
               chr10:15184718-15184952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               42, 21
               

               Conread position:
               150-368
               

               Cow position:
               chr10:3362843-3363055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               101, 75
               

               Conread position:
               160-378
               

               Cow position:
               chr10:5378100-5377890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               42, 36
               

               Conread position:
               163-386
               

               Cow position:
               chr10:54162323-54162554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               168-376
               

               Cow position:
               chr10:17370834-17371049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               57, 166
               

               Conread position:
               185-378
               

               Cow position:
               chr10:19582627-19582821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               133
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               15, 31
               

               Conread position:
               205-341
               

               Cow position:
               chr10:20134345-20134211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               208-354
               

               Cow position:
               chr10:69963209-69963354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               27, 84
               

               Conread position:
               215-373
               

               Cow position:
               chr10:982941-982785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               14, 51
               

               Conread position:
               215-376
               

               Cow position:
               chr10:38216751-38216911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               16, 37
               

               Conread position:
               215-378
               

               Cow position:
               chr10:25492360-25492518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               118
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               215-382
               

               Cow position:
               chr10:18253792-18253626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               16, 71
               

               Conread position:
               220-378
               

               Cow position:
               chr10:61618142-61618300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               15, 111
               

               Conread position:
               223-373
               

               Cow position:
               chr10:66090382-66090234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               8, 64
               

               Conread position:
               231-354
               

               Cow position:
               chr10:61366354-61366475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               96
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               232-377
               

               Cow position:
               chr10:33802972-33802828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               234-357
               

               Cow position:
               chr10:8226176-8226056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               100
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               234-385
               

               Cow position:
               chr10:14149556-14149709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               116
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               235-377
               

               Cow position:
               chr10:4821533-4821673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               107
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               236-362
               

               Cow position:
               chr10:53471327-53471201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               99
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               241-396
               

               Cow position:
               chr10:50775194-50775349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               117
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               14, 23
               

               Conread position:
               250-351
               

               Cow position:
               chr10:22419627-22419728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               102
               

               Alignm identity:
               83
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               256-378
               

               Cow position:
               chr10:25103925-25103803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               97
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               93, 7
               

               Conread position:
               258-378
               

               Cow position:
               chr10:17451001-17450881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               93
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               269-378
               

               Cow position:
               chr10:27503257-27503367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               111
               

               Alignm identity:
               91
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               48-378
               

               Cow position:
               chr11:18357609-18357260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               37, 130
               

               Conread position:
               49-380
               

               Cow position:
               chr11:72454423-72454081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               245
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               98, 20
               

               Conread position:
               60-376
               

               Cow position:
               chr11:34115501-34115832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               221
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               33, 124
               

               Conread position:
               60-379
               

               Cow position:
               chr11:33987315-33987642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               230
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               25, 213
               

               Conread position:
               61-377
               

               Cow position:
               chr11:15115667-15115341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               236
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               26, 205
               

               Conread position:
               75-340
               

               Cow position:
               chr11:56268523-56268783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               72, 14
               

               Conread position:
               75-378
               

               Cow position:
               chr11:8752319-8752624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               82, 54
               

               Conread position:
               76-354
               

               Cow position:
               chr11:21848293-21848593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               211
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               76-388
               

               Cow position:
               chr11:11744948-11744636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               72, 165
               

               Conread position:
               77-377
               

               Cow position:
               chr11:25167135-25166831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               198
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               12, 40
               

               Conread position:
               82-358
               

               Cow position:
               chr11:46104120-46104400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               204
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               65, 5
               

               Conread position:
               84-370
               

               Cow position:
               chr11:66057645-66057946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               63, 111
               

               Conread position:
               84-378
               

               Cow position:
               chr11:28220793-28221100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               214
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               64, 102
               

               Conread position:
               87-361
               

               Cow position:
               chr11:55933722-55933432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               211
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               56, 213
               

               Conread position:
               87-362
               

               Cow position:
               chr11:66871465-66871755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               58, 93
               

               Conread position:
               87-378
               

               Cow position:
               chr11:65373142-65372848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               211
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               58, 109
               

               Conread position:
               87-412
               

               Cow position:
               chr11:41280117-41280452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               231
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               42, 120
               

               Conread position:
               88-359
               

               Cow position:
               chr11:80319617-80319899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               200
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               58, 112
               

               Conread position:
               88-378
               

               Cow position:
               chr11:34642962-34643260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               59, 97
               

               Conread position:
               88-378
               

               Cow position:
               chr11:42393232-42392933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               50, 80
               

               Conread position:
               88-384
               

               Cow position:
               chr11:11742988-11743290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               58, 133
               

               Conread position:
               89-345
               

               Cow position:
               chr11:2328150-2327885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               186
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               89-354
               

               Cow position:
               chr11:84386753-84387015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               58, 97
               

               Conread position:
               89-367
               

               Cow position:
               chr11:65156038-65155748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               58, 113
               

               Conread position:
               89-368
               

               Cow position:
               chr11:24514407-24514692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               34, 104
               

               Conread position:
               89-368
               

               Cow position:
               chr11:54056342-54056061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               194
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               57, 113
               

               Conread position:
               89-380
               

               Cow position:
               chr11:19848180-19848481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               214
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               61, 113
               

               Conread position:
               89-415
               

               Cow position:
               chr11:61470039-61469702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               58, 20
               

               Conread position:
               90-372
               

               Cow position:
               chr11:52237271-52236980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               68, 107
               

               Conread position:
               90-377
               

               Cow position:
               chr11:22296285-22295981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               218
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               29, 114
               

               Conread position:
               91-338
               

               Cow position:
               chr11:39278622-39278362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               56, 170
               

               Conread position:
               91-400
               

               Cow position:
               chr11:66226422-66226111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               217
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               60, 22
               

               Conread position:
               93-373
               

               Cow position:
               chr11:20558630-20558910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               19, 84
               

               Conread position:
               93-378
               

               Cow position:
               chr11:76959054-76958781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               115, 72
               

               Conread position:
               98-373
               

               Cow position:
               chr11:7434412-7434685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               53, 88
               

               Conread position:
               98-378
               

               Cow position:
               chr11:13267352-13267638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               49, 68
               

               Conread position:
               98-378
               

               Cow position:
               chr11:56638938-56639212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               25, 126
               

               Conread position:
               102-376
               

               Cow position:
               chr11:75576240-75576523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               43, 102
               

               Conread position:
               103-378
               

               Cow position:
               chr11:1538588-1538311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               39, 82
               

               Conread position:
               104-353
               

               Cow position:
               chr11:48040889-48040634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               45, 97
               

               Conread position:
               135-427
               

               Cow position:
               chr11:75268513-75268800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               31, 9
               

               Conread position:
               146-366
               

               Cow position:
               chr11:79661978-79662202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               74, 50
               

               Conread position:
               146-369
               

               Cow position:
               chr11:17202279-17202056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               29, 25
               

               Conread position:
               146-380
               

               Cow position:
               chr11:22069676-22069443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               167
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               90, 37
               

               Conread position:
               147-353
               

               Cow position:
               chr11:49413795-49414008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               54, 12
               

               Conread position:
               148-373
               

               Cow position:
               chr11:61055616-61055391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               154
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               88, 83
               

               Conread position:
               148-378
               

               Cow position:
               chr11:16743032-16743268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               60, 48
               

               Conread position:
               148-378
               

               Cow position:
               chr11:33628252-33628019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               45, 88
               

               Conread position:
               148-431
               

               Cow position:
               chr11:39175753-39176033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               19, 88
               

               Conread position:
               154-378
               

               Cow position:
               chr11:35651273-35651052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               51, 80
               

               Conread position:
               162-377
               

               Cow position:
               chr11:69294943-69294722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               42, 9
               

               Conread position:
               165-381
               

               Cow position:
               chr11:35932796-35933011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               168-367
               

               Cow position:
               chr11:26081424-26081233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               144, 12
               

               Conread position:
               176-382
               

               Cow position:
               chr11:21646215-21646420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               60, 97
               

               Conread position:
               204-381
               

               Cow position:
               chr11:47872605-47872428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               26, 11
               

               Conread position:
               215-362
               

               Cow position:
               chr11:43847340-43847194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               20, 31
               

               Conread position:
               215-458
               

               Cow position:
               chr11:35919374-35919618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               22, 116
               

               Conread position:
               218-372
               

               Cow position:
               chr11:59916785-59916632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               120
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               220-361
               

               Cow position:
               chr11:18492254-18492115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               105
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               220-377
               

               Cow position:
               chr11:39626724-39626879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               220-381
               

               Cow position:
               chr11:58909110-58908951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               120
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               20, 71
               

               Conread position:
               221-378
               

               Cow position:
               chr11:37977923-37977763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               115
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               221-382
               

               Cow position:
               chr11:65703984-65704142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               9, 16
               

               Conread position:
               223-378
               

               Cow position:
               chr11:27601747-27601895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               224-377
               

               Cow position:
               chr11:58836233-58836383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               121
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               10, 57
               

               Conread position:
               234-387
               

               Cow position:
               chr11:65442820-65442973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               121, 56
               

               Conread position:
               234-399
               

               Cow position:
               chr11:41159240-41159074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               21, 30
               

               Conread position:
               235-378
               

               Cow position:
               chr11:52023395-52023540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               250-369
               

               Cow position:
               chr11:20836586-20836707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               99
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               89, 35
               

               Conread position:
               250-377
               

               Cow position:
               chr11:65117342-65117216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               101
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               250-385
               

               Cow position:
               chr11:7968502-7968369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               107
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               131, 35
               

               Conread position:
               250-386
               

               Cow position:
               chr11:44121206-44121340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               106
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               254-373
               

               Cow position:
               chr11:71255021-71255139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               94
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               254-377
               

               Cow position:
               chr11:50957052-50957173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               98
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               260-377
               

               Cow position:
               chr11:40735621-40735737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               92
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               263-362
               

               Cow position:
               chr11:16729782-16729683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               100
               

               Alignm identity:
               82
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               271-377
               

               Cow position:
               chr11:25371550-25371444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               107
               

               Alignm identity:
               86
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               33-380
               

               Cow position:
               chr12:4825308-4824959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               19, 92
               

               Conread position:
               74-378
               

               Cow position:
               chr12:10253265-10252953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               214
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               71, 96
               

               Conread position:
               75-378
               

               Cow position:
               chr12:8460935-8461248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               72, 29
               

               Conread position:
               77-362
               

               Cow position:
               chr12:45100346-45100627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               200
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               17, 45
               

               Conread position:
               78-378
               

               Cow position:
               chr12:36154794-36154479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               68, 9
               

               Conread position:
               84-362
               

               Cow position:
               chr12:10523206-10523496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               63, 193
               

               Conread position:
               86-362
               

               Cow position:
               chr12:14541235-14540944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               204
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               16, 117
               

               Conread position:
               86-378
               

               Cow position:
               chr12:14316659-14316964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               221
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               59, 116
               

               Conread position:
               87-345
               

               Cow position:
               chr12:38179452-38179185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               188
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               58, 115
               

               Conread position:
               87-362
               

               Cow position:
               chr12:26549142-26548857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               60, 106
               

               Conread position:
               87-373
               

               Cow position:
               chr12:16925177-16925463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               58, 11
               

               Conread position:
               87-378
               

               Cow position:
               chr12:33257461-33257756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               206
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               60, 26
               

               Conread position:
               87-380
               

               Cow position:
               chr12:33483797-33483493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               206
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               56, 99
               

               Conread position:
               87-381
               

               Cow position:
               chr12:6393618-6393307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               57, 256
               

               Conread position:
               87-381
               

               Cow position:
               chr12:10402250-10402555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               60, 49
               

               Conread position:
               87-382
               

               Cow position:
               chr12:29473182-29473492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               58, 98
               

               Conread position:
               88-406
               

               Cow position:
               chr12:27601337-27601666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               60, 188
               

               Conread position:
               89-373
               

               Cow position:
               chr12:25635222-25635507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               58, 32
               

               Conread position:
               90-374
               

               Cow position:
               chr12:41700756-41700467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               57, 31
               

               Conread position:
               90-380
               

               Cow position:
               chr12:9591831-9591538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               205
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               57, 132
               

               Conread position:
               93-354
               

               Cow position:
               chr12:40706832-40706571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               182
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               54, 28
               

               Conread position:
               93-413
               

               Cow position:
               chr12:24960896-24961234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               95-378
               

               Cow position:
               chr12:40291554-40291263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               141, 0
               

               Conread position:
               117-373
               

               Cow position:
               chr12:40778871-40778604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               30, 61
               

               Conread position:
               145-386
               

               Cow position:
               chr12:16918520-16918760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               74, 19
               

               Conread position:
               148-361
               

               Cow position:
               chr12:31526850-31527060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               21, 45
               

               Conread position:
               148-378
               

               Cow position:
               chr12:5197064-5196833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               164
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               54, 43
               

               Conread position:
               148-384
               

               Cow position:
               chr12:3992862-3993107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               148-386
               

               Cow position:
               chr12:23639798-23640044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               51, 147
               

               Conread position:
               151-362
               

               Cow position:
               chr12:15252329-15252544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               74, 47
               

               Conread position:
               160-355
               

               Cow position:
               chr12:22962504-22962704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               34, 109
               

               Conread position:
               160-372
               

               Cow position:
               chr12:26853160-26852949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               13, 47
               

               Conread position:
               161-347
               

               Cow position:
               chr12:29475047-29475237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               41, 92
               

               Conread position:
               161-351
               

               Cow position:
               chr12:37466415-37466614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               44, 135
               

               Conread position:
               168-362
               

               Cow position:
               chr12:13811671-13811473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               147
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               17, 120
               

               Conread position:
               171-380
               

               Cow position:
               chr12:17121376-17121175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               85, 37
               

               Conread position:
               182-379
               

               Cow position:
               chr12:42402523-42402721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               65, 110
               

               Conread position:
               184-376
               

               Cow position:
               chr12:36333589-36333781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               20, 49
               

               Conread position:
               200-356
               

               Cow position:
               chr12:25601421-25601268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               31, 25
               

               Conread position:
               207-368
               

               Cow position:
               chr12:3758182-3758020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               215-358
               

               Cow position:
               chr12:7949335-7949193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               16, 115
               

               Conread position:
               215-362
               

               Cow position:
               chr12:36525548-36525403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               113
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               215-380
               

               Cow position:
               chr12:27485371-27485534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               218-367
               

               Cow position:
               chr12:39109650-39109796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               12, 42
               

               Conread position:
               224-378
               

               Cow position:
               chr12:9206533-9206381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               7, 41
               

               Conread position:
               224-388
               

               Cow position:
               chr12:30097730-30097891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               8, 55
               

               Conread position:
               228-357
               

               Cow position:
               chr12:36474735-36474865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               105
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               9, 55
               

               Conread position:
               235-383
               

               Cow position:
               chr12:22247606-22247460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               265-383
               

               Cow position:
               chr12:23846651-23846767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               95
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               266-383
               

               Cow position:
               chr12:13061036-13060922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               93
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               31-366
               

               Cow position:
               chr13:15870133-15869774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               245
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               58-378
               

               Cow position:
               chr13:7236218-7235891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               87, 11
               

               Conread position:
               76-358
               

               Cow position:
               chr13:15983909-15984198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               71, 129
               

               Conread position:
               83-342
               

               Cow position:
               chr13:47567540-47567272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               63, 5
               

               Conread position:
               87-318
               

               Cow position:
               chr13:15638479-15638238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               60, 13
               

               Conread position:
               87-330
               

               Cow position:
               chr13:58727783-58728028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               186
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               61, 21
               

               Conread position:
               87-341
               

               Cow position:
               chr13:17564764-17564498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               59, 24
               

               Conread position:
               87-365
               

               Cow position:
               chr13:26171539-26171812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               59, 29
               

               Conread position:
               87-368
               

               Cow position:
               chr13:33837380-33837660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               212
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               59, 86
               

               Conread position:
               87-372
               

               Cow position:
               chr13:46496810-46496520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               76, 113
               

               Conread position:
               87-378
               

               Cow position:
               chr13:3176332-3176637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               14, 25
               

               Conread position:
               87-378
               

               Cow position:
               chr13:29192141-29192439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               83, 110
               

               Conread position:
               87-382
               

               Cow position:
               chr13:15720514-15720821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               88-354
               

               Cow position:
               chr13:945108-945370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               59, 120
               

               Conread position:
               88-355
               

               Cow position:
               chr13:16963153-16962891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               188
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               59, 153
               

               Conread position:
               88-378
               

               Cow position:
               chr13:39008316-39008602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               59, 22
               

               Conread position:
               88-379
               

               Cow position:
               chr13:15389655-15389373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               205
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               63, 34
               

               Conread position:
               89-333
               

               Cow position:
               chr13:8676172-8675917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               57, 110
               

               Conread position:
               89-347
               

               Cow position:
               chr13:6435930-6435664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               58, 27
               

               Conread position:
               89-368
               

               Cow position:
               chr13:16964287-16964581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               57, 108
               

               Conread position:
               89-372
               

               Cow position:
               chr13:17535418-17535701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               199
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               58, 112
               

               Conread position:
               89-372
               

               Cow position:
               chr13:18310221-18310514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               58, 17
               

               Conread position:
               89-381
               

               Cow position:
               chr13:14739246-14739546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               194
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               60, 182
               

               Conread position:
               90-358
               

               Cow position:
               chr13:12993445-12993724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               33, 23
               

               Conread position:
               90-368
               

               Cow position:
               chr13:46256598-46256889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               205
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               59, 240
               

               Conread position:
               90-377
               

               Cow position:
               chr13:15812268-15811969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               57, 30
               

               Conread position:
               92-361
               

               Cow position:
               chr13:17791651-17791923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               55, 111
               

               Conread position:
               95-339
               

               Cow position:
               chr13:35723539-35723290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               180
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               52, 26
               

               Conread position:
               98-394
               

               Cow position:
               chr13:48352576-48352880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               49, 13
               

               Conread position:
               99-352
               

               Cow position:
               chr13:17942768-17942507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               48, 239
               

               Conread position:
               100-381
               

               Cow position:
               chr13:38992463-38992179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               197
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               43, 21
               

               Conread position:
               111-372
               

               Cow position:
               chr13:8958398-8958654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               186
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               43, 10
               

               Conread position:
               121-377
               

               Cow position:
               chr13:3381757-3381491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               27, 218
               

               Conread position:
               148-339
               

               Cow position:
               chr13:28799282-28799479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               84, 149
               

               Conread position:
               148-362
               

               Cow position:
               chr13:5969190-5968970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               77, 187
               

               Conread position:
               148-362
               

               Cow position:
               chr13:11980139-11980356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               23, 52
               

               Conread position:
               148-378
               

               Cow position:
               chr13:57390119-57389882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               54, 48
               

               Conread position:
               152-379
               

               Cow position:
               chr13:18519384-18519166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               195, 40
               

               Conread position:
               157-393
               

               Cow position:
               chr13:37626688-37626928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               55, 47
               

               Conread position:
               161-325
               

               Cow position:
               chr13:12190761-12190932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               47, 35
               

               Conread position:
               169-352
               

               Cow position:
               chr13:15988517-15988337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               27, 11
               

               Conread position:
               170-374
               

               Cow position:
               chr13:28086614-28086408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               66, 58
               

               Conread position:
               203-362
               

               Cow position:
               chr13:54400577-54400733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               118
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               32, 5
               

               Conread position:
               215-334
               

               Cow position:
               chr13:21187631-21187749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               98
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               215-351
               

               Cow position:
               chr13:19478910-19479044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               103
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               215-357
               

               Cow position:
               chr13:59214985-59215126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               222-348
               

               Cow position:
               chr13:55322064-55321939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               107
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               223-371
               

               Cow position:
               chr13:40974644-40974791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               242-377
               

               Cow position:
               chr13:33625519-33625384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               113, 21
               

               Conread position:
               77-381
               

               Cow position:
               chr14:46986391-46986701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               12, 66
               

               Conread position:
               86-335
               

               Cow position:
               chr14:19589133-19589395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               42, 128
               

               Conread position:
               88-362
               

               Cow position:
               chr14:21593360-21593643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               194
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               57, 89
               

               Conread position:
               88-362
               

               Cow position:
               chr14:46298265-46298541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               58, 159
               

               Conread position:
               88-365
               

               Cow position:
               chr14:48398624-48398331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               59, 132
               

               Conread position:
               88-378
               

               Cow position:
               chr14:4780209-4779913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               24, 131
               

               Conread position:
               88-396
               

               Cow position:
               chr14:12076519-12076840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               34, 114
               

               Conread position:
               89-334
               

               Cow position:
               chr14:8593551-8593809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               61, 215
               

               Conread position:
               89-361
               

               Cow position:
               chr14:35168458-35168739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               23, 7
               

               Conread position:
               89-378
               

               Cow position:
               chr14:21185382-21185102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               56, 117
               

               Conread position:
               89-391
               

               Cow position:
               chr14:41469515-41469822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               58, 147
               

               Conread position:
               90-370
               

               Cow position:
               chr14:19949048-19949340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               195
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               56, 217
               

               Conread position:
               90-377
               

               Cow position:
               chr14:1600295-1600011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               57, 92
               

               Conread position:
               92-379
               

               Cow position:
               chr14:24450198-24449898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               208
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               55, 85
               

               Conread position:
               93-378
               

               Cow position:
               chr14:6226123-6226411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               19, 147
               

               Conread position:
               98-342
               

               Cow position:
               chr14:33733859-33734098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               48, 22
               

               Conread position:
               98-386
               

               Cow position:
               chr14:1672334-1672050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               101, 73
               

               Conread position:
               128-372
               

               Cow position:
               chr14:35325675-35325934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               183
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               19, 73
               

               Conread position:
               145-372
               

               Cow position:
               chr14:5878172-5877954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               148-349
               

               Cow position:
               chr14:48822117-48821918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               61, 93
               

               Conread position:
               148-351
               

               Cow position:
               chr14:14191771-14191563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               21, 145
               

               Conread position:
               148-372
               

               Cow position:
               chr14:8701408-8701199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               148-372
               

               Cow position:
               chr14:14095067-14094835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               54, 48
               

               Conread position:
               148-378
               

               Cow position:
               chr14:22448297-22448532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               30, 44
               

               Conread position:
               148-381
               

               Cow position:
               chr14:36547570-36547804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               88, 70
               

               Conread position:
               152-348
               

               Cow position:
               chr14:19195718-19195922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               167-352
               

               Cow position:
               chr14:27771463-27771287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               41, 9
               

               Conread position:
               204-338
               

               Cow position:
               chr14:36579535-36579403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               205-378
               

               Cow position:
               chr14:41775061-41775231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               215-347
               

               Cow position:
               chr14:21587996-21588124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               215-367
               

               Cow position:
               chr14:16551434-16551285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               16, 22
               

               Conread position:
               215-383
               

               Cow position:
               chr14:22825975-22825809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               127
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               39, 60
               

               Conread position:
               224-380
               

               Cow position:
               chr14:43265119-43264964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               120
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               11, 62
               

               Conread position:
               250-378
               

               Cow position:
               chr14:41949864-41949736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               99
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               100, 40
               

               Conread position:
               254-368
               

               Cow position:
               chr14:13483544-13483655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               94
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               260-376
               

               Cow position:
               chr14:42616765-42616650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               96
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               49, 77
               

               Conread position:
               44-365
               

               Cow position:
               chr15:50482175-50482510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               228
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               33, 159
               

               Conread position:
               52-301
               

               Cow position:
               chr15:3603812-3603540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               40, 257
               

               Conread position:
               62-354
               

               Cow position:
               chr15:22231794-22232096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               15, 150
               

               Conread position:
               70-365
               

               Cow position:
               chr15:18448915-18448619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               77, 17
               

               Conread position:
               75-381
               

               Cow position:
               chr15:22132005-22131692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               71, 104
               

               Conread position:
               76-347
               

               Cow position:
               chr15:18017340-18017620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               71, 48
               

               Conread position:
               76-362
               

               Cow position:
               chr15:37424828-37425112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               205
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               43, 35
               

               Conread position:
               77-373
               

               Cow position:
               chr15:11684354-11684647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               51, 44
               

               Conread position:
               79-348
               

               Cow position:
               chr15:15397558-15397824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               70, 105
               

               Conread position:
               80-391
               

               Cow position:
               chr15:46838543-46838864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               67, 123
               

               Conread position:
               86-337
               

               Cow position:
               chr15:28052569-28052322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               58, 25
               

               Conread position:
               87-357
               

               Cow position:
               chr15:1577699-1577418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               51, 120
               

               Conread position:
               87-380
               

               Cow position:
               chr15:30196208-30195920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               137, 59
               

               Conread position:
               87-383
               

               Cow position:
               chr15:14107861-14108172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               225
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               51, 24
               

               Conread position:
               87-405
               

               Cow position:
               chr15:1858699-1858384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               214
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               26, 135
               

               Conread position:
               88-322
               

               Cow position:
               chr15:10496535-10496302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               58, 137
               

               Conread position:
               88-358
               

               Cow position:
               chr15:30194576-30194311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               147, 56
               

               Conread position:
               88-366
               

               Cow position:
               chr15:5650327-5650621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               60, 129
               

               Conread position:
               88-368
               

               Cow position:
               chr15:10823628-10823906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               58, 34
               

               Conread position:
               88-386
               

               Cow position:
               chr15:12776750-12777061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               214
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               57, 114
               

               Conread position:
               88-389
               

               Cow position:
               chr15:44672526-44672203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               55, 114
               

               Conread position:
               89-367
               

               Cow position:
               chr15:43842952-43842672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               58, 113
               

               Conread position:
               89-380
               

               Cow position:
               chr15:21856120-21855823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               202
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               58, 97
               

               Conread position:
               90-381
               

               Cow position:
               chr15:46051975-46051684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               207
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               33, 19
               

               Conread position:
               92-376
               

               Cow position:
               chr15:41963969-41964253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               71, 21
               

               Conread position:
               93-380
               

               Cow position:
               chr15:38089312-38089603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               202
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               54, 29
               

               Conread position:
               98-337
               

               Cow position:
               chr15:22913461-22913696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               48, 72
               

               Conread position:
               98-378
               

               Cow position:
               chr15:38022161-38021867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               103-365
               

               Cow position:
               chr15:6995021-6994747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               44, 74
               

               Conread position:
               112-382
               

               Cow position:
               chr15:22216939-22217209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               35, 140
               

               Conread position:
               126-379
               

               Cow position:
               chr15:30262740-30263011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               21, 177
               

               Conread position:
               139-372
               

               Cow position:
               chr15:37063516-37063756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               59, 141
               

               Conread position:
               148-372
               

               Cow position:
               chr15:25426687-25426467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               148-377
               

               Cow position:
               chr15:42382276-42382512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               54, 32
               

               Conread position:
               148-382
               

               Cow position:
               chr15:23294813-23294564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               148-383
               

               Cow position:
               chr15:41959761-41959996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               60, 48
               

               Conread position:
               148-383
               

               Cow position:
               chr15:51908836-51909075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               82, 49
               

               Conread position:
               161-378
               

               Cow position:
               chr15:48592092-48591874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               38, 133
               

               Conread position:
               165-372
               

               Cow position:
               chr15:37259065-37258858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               37, 76
               

               Conread position:
               168-376
               

               Cow position:
               chr15:8266848-8267054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               63, 40
               

               Conread position:
               201-391
               

               Cow position:
               chr15:40545064-40544874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               18, 61
               

               Conread position:
               215-345
               

               Cow position:
               chr15:51836793-51836665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               108
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               215-372
               

               Cow position:
               chr15:39996699-39996546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               116
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               224-367
               

               Cow position:
               chr15:16716059-16716201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               38, 34
               

               Conread position:
               232-378
               

               Cow position:
               chr15:28967656-28967509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               108
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               235-384
               

               Cow position:
               chr15:48065848-48065700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               113
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               237-367
               

               Cow position:
               chr15:27020176-27020047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               75, 91
               

               Conread position:
               250-372
               

               Cow position:
               chr15:28051048-28050929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               101
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               250-397
               

               Cow position:
               chr15:4164953-4165102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               111
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               129, 0
               

               Conread position:
               254-368
               

               Cow position:
               chr15:22132294-22132182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               92
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               263-376
               

               Cow position:
               chr15:41920617-41920729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               93
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               46, 27
               

               Conread position:
               268-396
               

               Cow position:
               chr15:38554083-38554210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               101
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               123, 61
               

               Conread position:
               275-378
               

               Cow position:
               chr15:26952589-26952692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               105
               

               Alignm identity:
               89
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               41, 11
               

               Conread position:
               49-376
               

               Cow position:
               chr16:7557642-7557988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               233
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               54, 152
               

               Conread position:
               60-386
               

               Cow position:
               chr16:38378332-38377982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               18, 147
               

               Conread position:
               62-326
               

               Cow position:
               chr16:42915663-42915388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               16, 46
               

               Conread position:
               63-377
               

               Cow position:
               chr16:29519853-29519527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               15, 61
               

               Conread position:
               76-345
               

               Cow position:
               chr16:36134457-36134177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               13, 153
               

               Conread position:
               79-379
               

               Cow position:
               chr16:16024293-16024597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               54, 109
               

               Conread position:
               84-354
               

               Cow position:
               chr16:45726064-45725796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               5, 65
               

               Conread position:
               84-367
               

               Cow position:
               chr16:20671644-20671362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               63, 114
               

               Conread position:
               84-373
               

               Cow position:
               chr16:51165197-51164914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               207
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               63, 22
               

               Conread position:
               86-376
               

               Cow position:
               chr16:28360960-28360662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               214
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               58, 115
               

               Conread position:
               87-354
               

               Cow position:
               chr16:29385048-29384776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               60, 33
               

               Conread position:
               87-365
               

               Cow position:
               chr16:16640305-16640594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               45, 101
               

               Conread position:
               87-366
               

               Cow position:
               chr16:26875241-26875531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               196
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               87-378
               

               Cow position:
               chr16:8855532-8855227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               203
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               60, 237
               

               Conread position:
               87-380
               

               Cow position:
               chr16:29615813-29616113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               204
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               60, 188
               

               Conread position:
               87-383
               

               Cow position:
               chr16:30960281-30959975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               217
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               33, 116
               

               Conread position:
               88-362
               

               Cow position:
               chr16:51671959-51672239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               57, 114
               

               Conread position:
               88-377
               

               Cow position:
               chr16:21344881-21344595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               212
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               59, 38
               

               Conread position:
               88-378
               

               Cow position:
               chr16:19051426-19051129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               59, 42
               

               Conread position:
               88-395
               

               Cow position:
               chr16:2581336-2581655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               61, 113
               

               Conread position:
               89-347
               

               Cow position:
               chr16:8684193-8683930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               182
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               56, 22
               

               Conread position:
               89-376
               

               Cow position:
               chr16:28078215-28077916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               35, 115
               

               Conread position:
               89-378
               

               Cow position:
               chr16:21403361-21403663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               220
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               58, 93
               

               Conread position:
               89-378
               

               Cow position:
               chr16:53680492-53680199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               56, 86
               

               Conread position:
               89-390
               

               Cow position:
               chr16:43347320-43347007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               210
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               57, 113
               

               Conread position:
               90-379
               

               Cow position:
               chr16:30983259-30983548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 124
               

               Conread position:
               91-381
               

               Cow position:
               chr16:1545118-1544820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               56, 75
               

               Conread position:
               92-356
               

               Cow position:
               chr16:52712389-52712110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               55, 29
               

               Conread position:
               93-380
               

               Cow position:
               chr16:52802952-52802659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               52, 170
               

               Conread position:
               98-378
               

               Cow position:
               chr16:29314521-29314809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               203
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               49, 15
               

               Conread position:
               103-400
               

               Cow position:
               chr16:27840019-27839724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               215
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               44, 152
               

               Conread position:
               118-378
               

               Cow position:
               chr16:12825212-12824941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               27, 8
               

               Conread position:
               148-377
               

               Cow position:
               chr16:21343623-21343851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               60, 27
               

               Conread position:
               157-373
               

               Cow position:
               chr16:34165675-34165894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               156
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               64, 94
               

               Conread position:
               168-353
               

               Cow position:
               chr16:29535839-29536029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               138
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               51, 101
               

               Conread position:
               193-367
               

               Cow position:
               chr16:7140295-7140123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               78, 22
               

               Conread position:
               209-361
               

               Cow position:
               chr16:20391873-20391719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               18, 47
               

               Conread position:
               215-377
               

               Cow position:
               chr16:33176983-33177144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               215-382
               

               Cow position:
               chr16:54506674-54506508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               20, 57
               

               Conread position:
               217-358
               

               Cow position:
               chr16:42213965-42214104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               111
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               219-372
               

               Cow position:
               chr16:14285159-14285310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               12, 67
               

               Conread position:
               234-368
               

               Cow position:
               chr16:15216502-15216368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               104
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               235-392
               

               Cow position:
               chr16:14141038-14141194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               143, 57
               

               Conread position:
               250-369
               

               Cow position:
               chr16:54670572-54670454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               99
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               50-362
               

               Cow position:
               chr17:15738400-15738716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               35, 49
               

               Conread position:
               76-378
               

               Cow position:
               chr17:26062010-26062327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               70, 127
               

               Conread position:
               84-378
               

               Cow position:
               chr17:40712351-40712631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               118, 14
               

               Conread position:
               84-380
               

               Cow position:
               chr17:2526090-2526397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               221
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               6, 12
               

               Conread position:
               87-342
               

               Cow position:
               chr17:13075662-13075397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               60, 99
               

               Conread position:
               87-354
               

               Cow position:
               chr17:25358129-25358401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               48, 32
               

               Conread position:
               87-354
               

               Cow position:
               chr17:28116199-28115923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               59, 131
               

               Conread position:
               87-378
               

               Cow position:
               chr17:7819808-7819510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               66, 115
               

               Conread position:
               87-383
               

               Cow position:
               chr17:19091575-19091886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               64, 84
               

               Conread position:
               88-370
               

               Cow position:
               chr17:37399639-37399349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               205
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               59, 103
               

               Conread position:
               89-366
               

               Cow position:
               chr17:9956767-9957046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               118, 37
               

               Conread position:
               89-372
               

               Cow position:
               chr17:28586591-28586293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               210
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               54, 31
               

               Conread position:
               89-378
               

               Cow position:
               chr17:12789256-12788978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               198
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               93, 49
               

               Conread position:
               89-378
               

               Cow position:
               chr17:43454364-43454063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               57, 232
               

               Conread position:
               92-376
               

               Cow position:
               chr17:13411674-13411955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               55, 114
               
92-398UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr17:19530614-19530292 (view  custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               53, 174
               
98-358UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr17:23429863-23429597 (view  custom track)

               
               
               
Alignm length: 268

               
               
               
Alignm identity: 185

               
               
               
Alignm E-value: 4e-33

               
               
               
Alignm gaps (pig, cow): 51, 199
103-366UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr17:27331996-27331735 (view  custom track)

               
               
               
Alignm length: 275

               
               
               
Alignm identity: 188

               
               
               
Alignm E-value: 3e-22

               
               
               
Alignm gaps (pig, cow): 32, 153

               
               
               Conread position:110-378
               
               
               Cow position:chr17:17256345-17256612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 60

               
               
               Conread position:124-379
               
               
               Cow position:chr17:16405629-16405368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):23, 52

               
               
               Conread position:148-376
               
               
               Cow position:chr17:4698950-4698729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 28

               
               
               Conread position:148-376
               
               
               Cow position:chr17:30251758-30251522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):53, 32

               
               
               Conread position:148-381
               
               
               Cow position:chr17:30002203-30002444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):54, 48

               
               
               Conread position:150-354
               
               
               Cow position:chr17:3428003-3427807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:160-378
               
               
               Cow position:chr17:25916265-25916500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:161-378
               
               
               Cow position:chr17:10299063-10298853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 35

               
               
               Conread position:162-380
               
               
               Cow position:chr17:14826334-14826109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):51, 136

               
               
               Conread position:169-373
               
               
               Cow position:chr17:27725578-27725777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:218-403
               
               
               Cow position:chr17:3823851-3823666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):17, 31

               
               
               Conread position:220-352
               
               
               Cow position:chr17:18400141-18400010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:220-365
               
               
               Cow position:chr17:32344959-32344815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:221-389
               
               
               Cow position:chr17:21337687-21337852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:228-380
               
               
               Cow position:chr17:32169156-32169008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:229-369
               
               
               Cow position:chr17:1577811-1577674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:234-358
               
               
               Cow position:chr17:20998487-20998363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:237-378
               
               
               Cow position:chr17:20278626-20278487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 51

               
               
               Conread position:250-383
               
               
               Cow position:chr17:19533196-19533328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:254-369
               
               
               Cow position:chr17:19201179-19201065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:50-354
               
               
               Cow position:chr18:25843508-25843200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 67

               
               
               Conread position:50-362
               
               
               Cow position:chr18:18945195-18944879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):29, 119

               
               
               Conread position:70-368
               
               
               Cow position:chr18:34807948-34807643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):73, 100

               
               
               Conread position:76-378
               
               
               Cow position:chr18:29829664-29829348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:77-378
               
               
               Cow position:chr18:20907656-20907971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:81-378
               
               
               Cow position:chr18:50034906-50034613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 125

               
               
               Conread position:87-340
               
               
               Cow position:chr18:32741189-32740931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:87-358
               
               
               Cow position:chr18:40669016-40669297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:87-359
               
               
               Cow position:chr18:31617699-31617416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):58, 40

               
               
               Conread position:87-362
               
               
               Cow position:chr18:28959651-28959367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):58, 103

               
               
               Conread position:87-378
               
               
               Cow position:chr18:36853122-36852815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):63, 34

               
               
               Conread position:88-362
               
               
               Cow position:chr18:35698983-35698696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):55, 114

               
               
               Conread position:88-370
               
               
               Cow position:chr18:34598268-34598563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:88-372
               
               
               Cow position:chr18:8276229-8276519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):59, 121

               
               
               Conread position:88-378
               
               
               Cow position:chr18:32647020-32646722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:88-378
               
               
               Cow position:chr18:37526900-37526598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):59, 197

               
               
               Conread position:88-386
               
               
               Cow position:chr18:5194314-5194620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):59, 79

               
               
               Conread position:89-364
               
               
               Cow position:chr18:19119325-19119591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 18

               
               
               Conread position:89-378
               
               
               Cow position:chr18:29664529-29664234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):67, 183

               
               
               Conread position:89-380
               
               
               Cow position:chr18:6841096-6841373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):166, 30

               
               
               Conread position:89-381
               
               
               Cow position:chr18:20076585-20076296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):51, 63

               
               
               Conread position:90-330
               
               
               Cow position:chr18:33203784-33204034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):57, 112

               
               
               Conread position:90-368
               
               
               Cow position:chr18:47649588-47649869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):57, 160

               
               
               Conread position:90-380
               
               
               Cow position:chr18:16510110-16510403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 146

               
               
               Conread position:90-380
               
               
               Cow position:chr18:18027616-18027917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:91-347
               
               
               Cow position:chr18:21539861-21539601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):44, 79

               
               
               Conread position:92-361
               
               
               Cow position:chr18:42777524-42777806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:93-414
               
               
               Cow position:chr18:18479030-18479362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):72, 108

               
               
               Conread position:98-358
               
               
               Cow position:chr18:35748742-35748470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):48, 161

               
               
               Conread position:105-379
               
               
               Cow position:chr18:4746625-4746909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:111-368
               
               
               Cow position:chr18:24059250-24058995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):35, 81

               
               
               Conread position:113-354
               
               
               Cow position:chr18:936801-936547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 69

               
               
               Conread position:114-368
               
               
               Cow position:chr18:32661856-32662117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):31, 86

               
               
               Conread position:148-355
               
               
               Cow position:chr18:49007721-49007511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):70, 21

               
               
               Conread position:148-361
               
               
               Cow position:chr18:1505733-1505524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):53, 48

               
               
               Conread position:148-368
               
               
               Cow position:chr18:47278346-47278137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:148-378
               
               
               Cow position:chr18:17137773-17137991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):142, 48

               
               
               Conread position:148-378
               
               
               Cow position:chr18:26453223-26452985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):54, 48

               
               
               Conread position:148-381
               
               
               Cow position:chr18:38463545-38463307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):60, 33

               
               
               Conread position:148-384
               
               
               Cow position:chr18:32936495-32936256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:150-369
               
               
               Cow position:chr18:51154800-51155019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):81, 46

               
               
               Conread position:150-378
               
               
               Cow position:chr18:29516673-29516904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):75, 59

               
               
               Conread position:151-343
               
               
               Cow position:chr18:28665097-28664902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):33, 143

               
               
               Conread position:157-381
               
               
               Cow position:chr18:934356-934137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:157-394
               
               
               Cow position:chr18:53011977-53012201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 25

               
               
               Conread position:162-368
               
               
               Cow position:chr18:1006859-1007050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:162-378
               
               
               Cow position:chr18:15223156-15223376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 12

               
               
               Conread position:164-378
               
               
               Cow position:chr18:29086543-29086763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):32, 46

               
               
               Conread position:168-382
               
               
               Cow position:chr18:54690701-54690911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:169-378
               
               
               Cow position:chr18:45976616-45976821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 49

               
               
               Conread position:204-362
               
               
               Cow position:chr18:32636294-32636135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):134, 84

               
               
               Conread position:220-378
               
               
               Cow position:chr18:25964163-25964320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:224-387
               
               
               Cow position:chr18:6746670-6746831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 54

               
               
               Conread position:234-381
               
               
               Cow position:chr18:41794081-41794228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:250-362
               
               
               Cow position:chr18:31265149-31265037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:250-381
               
               
               Cow position:chr18:17220541-17220410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):99, 66

               
               
               Conread position:250-381
               
               
               Cow position:chr18:17235189-17235058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):99, 66

               
               
               Conread position:252-362
               
               
               Cow position:chr18:28844762-28844871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:254-382
               
               
               Cow position:chr18:35530412-35530285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:59-397
               
               
               Cow position:chr19:25836641-25836293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:75-378
               
               
               Cow position:chr19:36665711-36666029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):72, 51

               
               
               Conread position:83-341
               
               
               Cow position:chr19:55283316-55283060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):148, 50

               
               
               Conread position:83-354
               
               
               Cow position:chr19:45715821-45716086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):133, 62

               
               
               Conread position:84-368
               
               
               Cow position:chr19:44572723-44572432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):18, 193

               
               
               Conread position:84-377
               
               
               Cow position:chr19:33716435-33716140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):63, 140

               
               
               Conread position:87-330
               
               
               Cow position:chr19:15504999-15504760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 80

               
               
               Conread position:87-372
               
               
               Cow position:chr19:11179316-11179597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 89

               
               
               Conread position:87-378
               
               
               Cow position:chr19:25666606-25666897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):60, 33

               
               
               Conread position:89-335
               
               
               Cow position:chr19:2954641-2954885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):59, 113

               
               
               Conread position:90-366
               
               
               Cow position:chr19:25841015-25841298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):57, 87

               
               
               Conread position:98-384
               
               
               Cow position:chr19:54407259-54406963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:99-346
               
               
               Cow position:chr19:8530604-8530856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 77

               
               
               Conread position:115-378
               
               
               Cow position:chr19:43376438-43376712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 62

               
               
               Conread position:121-379
               
               
               Cow position:chr19:47199961-47199705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):26, 130

               
               
               Conread position:147-344
               
               
               Cow position:chr19:48800475-48800278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 53

               
               
               Conread position:147-384
               
               
               Cow position:chr19:21424333-21424094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):22, 147

               
               
               Conread position:164-342
               
               
               Cow position:chr19:976677-976498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 123

               
               
               Conread position:164-386
               
               
               Cow position:chr19:15876379-15876604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):55, 215

               
               
               Conread position:168-345
               
               
               Cow position:chr19:22225136-22225309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):65, 12

               
               
               Conread position:209-400
               
               
               Cow position:chr19:52304499-52304690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 15

               
               
               Conread position:215-376
               
               
               Cow position:chr19:34208430-34208270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):16, 74

               
               
               Conread position:217-344
               
               
               Cow position:chr19:55259132-55259008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:219-379
               
               
               Cow position:chr19:43785988-43785830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:220-366
               
               
               Cow position:chr19:23501430-23501572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:229-368
               
               
               Cow position:chr19:30502302-30502437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 16

               
               
               Conread position:251-369
               
               
               Cow position:chr19:9113021-9113140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:252-367
               
               
               Cow position:chr19:31785321-31785207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:45-370
               
               
               Cow position:chr2:755663-755993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):42, 52

               
               
               Conread position:47-368
               
               
               Cow position:chr2:9723926-9724237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):27, 60

               
               
               Conread position:50-362
               
               
               Cow position:chr2:34493933-34494244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):35, 140

               
               
               Conread position:50-362
               
               
               Cow position:chr2:47401065-47401373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:76-379
               
               
               Cow position:chr2:5515972-5516282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 134

               
               
               Conread position:76-383
               
               
               Cow position:chr2:4770183-4770495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):25, 33

               
               
               Conread position:77-385
               
               
               Cow position:chr2:73303770-73304096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):68, 53

               
               
               Conread position:84-370
               
               
               Cow position:chr2:64510802-64510504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):61, 179

               
               
               Conread position:87-330
               
               
               Cow position:chr2:32196119-32195865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):60, 127

               
               
               Conread position:87-368
               
               
               Cow position:chr2:1648949-1649240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):58, 52

               
               
               Conread position:87-370
               
               
               Cow position:chr2:67942931-67943218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):58, 98

               
               
               Conread position:87-372
               
               
               Cow position:chr2:11302830-11303125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:87-377
               
               
               Cow position:chr2:18143882-18143574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):51, 119

               
               
               Conread position:87-378
               
               
               Cow position:chr2:74376261-74375957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:87-388
               
               
               Cow position:chr2:80968055-80967763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):60, 82

               
               
               Conread position:87-389
               
               
               Cow position:chr2:54068863-54069165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:87-389
               
               
               Cow position:chr2:67491743-67491436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):60, 109

               
               
               Conread position:88-348
               
               
               Cow position:chr2:34918732-34918462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):59, 106

               
               
               Conread position:88-362
               
               
               Cow position:chr2:58205133-58204846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:88-367
               
               
               Cow position:chr2:38283124-38282839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):59, 51

               
               
               Conread position:89-362
               
               
               Cow position:chr2:84761892-84762176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):57, 137

               
               
               Conread position:89-366
               
               
               Cow position:chr2:12833083-12832809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):58, 41

               
               
               Conread position:89-370
               
               
               Cow position:chr2:55068063-55067779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 126

               
               
               Conread position:89-378
               
               
               Cow position:chr2:75021216-75020923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):58, 124

               
               
               Conread position:90-367
               
               
               Cow position:chr2:79586558-79586266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 83

               
               
               Conread position:90-371
               
               
               Cow position:chr2:55301190-55301478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):55, 99

               
               
               Conread position:92-359
               
               
               Cow position:chr2:64901824-64902097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):54, 110

               
               
               Conread position:94-383
               
               
               Cow position:chr2:75923936-75924230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):107, 45

               
               
               Conread position:110-378
               
               
               Cow position:chr2:33193323-33193603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):17, 89

               
               
               Conread position:112-372
               
               
               Cow position:chr2:37125898-37125627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 70

               
               
               Conread position:114-372
               
               
               Cow position:chr2:84535158-84534892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):33, 120

               
               
               Conread position:114-383
               
               
               Cow position:chr2:13176420-13176695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 154

               
               
               Conread position:120-389
               
               
               Cow position:chr2:60007846-60007562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):26, 182

               
               
               Conread position:142-378
               
               
               Cow position:chr2:62716737-62716497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:148-354
               
               
               Cow position:chr2:20269895-20270102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 28

               
               
               Conread position:148-367
               
               
               Cow position:chr2:32342508-32342734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:148-376
               
               
               Cow position:chr2:20542184-20542413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):52, 112

               
               
               Conread position:148-382
               
               
               Cow position:chr2:16639196-16638957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 48

               
               
               Conread position:149-383
               
               
               Cow position:chr2:10461884-10461645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):80, 148

               
               
               Conread position:150-382
               
               
               Cow position:chr2:26770901-26770668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):19, 68

               
               
               Conread position:162-345
               
               
               Cow position:chr2:77697707-77697890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):103, 32

               
               
               Conread position:164-378
               
               
               Cow position:chr2:14016159-14016369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):66, 80

               
               
               Conread position:172-388
               
               
               Cow position:chr2:78091330-78091111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):89, 32

               
               
               Conread position:180-378
               
               
               Cow position:chr2:15739979-15740166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:215-354
               
               
               Cow position:chr2:59803601-59803737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:215-378
               
               
               Cow position:chr2:64078364-64078202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):15, 113

               
               
               Conread position:215-381
               
               
               Cow position:chr2:9763617-9763451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 72

               
               
               Conread position:216-366
               
               
               Cow position:chr2:4214035-4213886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:221-378
               
               
               Cow position:chr2:2911943-2911786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):137, 69

               
               
               Conread position:222-379
               
               
               Cow position:chr2:14111279-14111131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:229-398
               
               
               Cow position:chr2:4817725-4817893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):44, 62

               
               
               Conread position:232-378
               
               
               Cow position:chr2:35732342-35732488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):118, 52

               
               
               Conread position:236-379
               
               
               Cow position:chr2:27055172-27055029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 93

               
               
               Conread position:237-367
               
               
               Cow position:chr2:33496895-33496766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):73, 93

               
               
               Conread position:254-417
               
               
               Cow position:chr2:85517930-85518086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:276-383
               
               
               Cow position:chr2:74518698-74518590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:50-380
               
               
               Cow position:chr20:37458393-37458746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):35, 164

               
               
               Conread position:50-383
               
               
               Cow position:chr20:27479359-27479024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:80-386
               
               
               Cow position:chr20:27352127-27352447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):34, 58

               
               
               Conread position:84-384
               
               
               Cow position:chr20:23281863-23282164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):61, 98

               
               
               Conread position:87-336
               
               
               Cow position:chr20:18110982-18110723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):44, 63

               
               
               Conread position:87-354
               
               
               Cow position:chr20:29966148-29965878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):60, 95

               
               
               Conread position:87-380
               
               
               Cow position:chr20:17637702-17637390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 261

               
               
               Conread position:87-381
               
               
               Cow position:chr20:22229555-22229247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):59, 115

               
               
               Conread position:88-347
               
               
               Cow position:chr20:33810000-33809730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 25

               
               
               Conread position:88-372
               
               
               Cow position:chr20:1274856-1274573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):113, 51

               
               
               Conread position:88-376
               
               
               Cow position:chr20:27241077-27240797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:88-378
               
               
               Cow position:chr20:34946890-34946607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):58, 30

               
               
               Conread position:89-368
               
               
               Cow position:chr20:41908749-41909036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:89-378
               
               
               Cow position:chr20:10378869-10379156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):22, 117

               
               
               Conread position:90-359
               
               
               Cow position:chr20:33222145-33222414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):33, 113

               
               
               Conread position:90-362
               
               
               Cow position:chr20:12838203-12838473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):126, 58

               
               
               Conread position:90-379
               
               
               Cow position:chr20:35837381-35837662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):30, 118

               
               
               Conread position:90-395
               
               
               Cow position:chr20:8264707-8265016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):55, 80

               
               
               Conread position:91-352
               
               
               Cow position:chr20:10585786-10585516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 86

               
               
               Conread position:91-378
               
               
               Cow position:chr20:32873325-32873040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:92-352
               
               
               Cow position:chr20:33344120-33344394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):19, 113

               
               
               Conread position:92-393
               
               
               Cow position:chr20:17557104-17556810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:93-361
               
               
               Cow position:chr20:5805804-5805531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:93-378
               
               
               Cow position:chr20:3345616-3345341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:97-368
               
               
               Cow position:chr20:14408117-14408397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 180

               
               
               Conread position:98-378
               
               
               Cow position:chr20:3800466-3800758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):30, 107

               
               
               Conread position:111-358
               
               
               Cow position:chr20:5085442-5085698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):35, 15

               
               
               Conread position:118-376
               
               
               Cow position:chr20:18555734-18556005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 85

               
               
               Conread position:120-380
               
               
               Cow position:chr20:13156250-13155984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):27, 177

               
               
               Conread position:122-380
               
               
               Cow position:chr20:13156292-13156561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):25, 57

               
               
               Conread position:148-333
               
               
               Cow position:chr20:36399690-36399873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:148-368
               
               
               Cow position:chr20:38031710-38031491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:148-378
               
               
               Cow position:chr20:35237727-35237950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):90, 48

               
               
               Conread position:148-383
               
               
               Cow position:chr20:28521820-28521587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:150-380
               
               
               Cow position:chr20:9216125-9215902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:151-378
               
               
               Cow position:chr20:21428710-21428931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):58, 45

               
               
               Conread position:162-367
               
               
               Cow position:chr20:37442077-37441875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 34

               
               
               Conread position:167-479
               
               
               Cow position:chr20:9217317-9217014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):41, 33

               
               
               Conread position:204-372
               
               
               Cow position:chr20:30022826-30022661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):27, 20

               
               
               Conread position:214-379
               
               
               Cow position:chr20:13187867-13187700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 52

               
               
               Conread position:215-380
               
               
               Cow position:chr20:14862417-14862575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):20, 48

               
               
               Conread position:216-380
               
               
               Cow position:chr20:35218230-35218072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):135, 29

               
               
               Conread position:216-385
               
               
               Cow position:chr20:14122905-14122733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:220-362
               
               
               Cow position:chr20:20377961-20378103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):19, 67

               
               
               Conread position:224-378
               
               
               Cow position:chr20:2696169-2696016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 35

               
               
               Conread position:246-390
               
               
               Cow position:chr20:27943871-27944016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:50-378
               
               
               Cow position:chr21:33375165-33374822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):97, 24

               
               
               Conread position:62-378
               
               
               Cow position:chr21:4511109-4510786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 120

               
               
               Conread position:76-352
               
               
               Cow position:chr21:37175753-37175464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 111

               
               
               Conread position:80-370
               
               
               Cow position:chr21:38743811-38744112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):65, 102

               
               
               Conread position:83-352
               
               
               Cow position:chr21:14506863-14507143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):64, 5

               
               
               Conread position:87-362
               
               
               Cow position:chr21:14571859-14571584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 138

               
               
               Conread position:87-378
               
               
               Cow position:chr21:24161680-24161977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):53, 206

               
               
               Conread position:87-386
               
               
               Cow position:chr21:40886976-40886682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):59, 89

               
               
               Conread position:88-358
               
               
               Cow position:chr21:37559602-37559323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):59, 166

               
               
               Conread position:88-361
               
               
               Cow position:chr21:36924171-36924447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 95

               
               
               Conread position:88-368
               
               
               Cow position:chr21:47198601-47198320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:88-378
               
               
               Cow position:chr21:13507946-13508220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):57, 10

               
               
               Conread position:88-378
               
               
               Cow position:chr21:15947603-15947884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 26

               
               
               Conread position:90-354
               
               
               Cow position:chr21:25358477-25358204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 84

               
               
               Conread position:90-378
               
               
               Cow position:chr21:30880439-30880136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):57, 87

               
               
               Conread position:91-330
               
               
               Cow position:chr21:33606373-33606122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 201

               
               
               Conread position:92-342
               
               
               Cow position:chr21:43964971-43964708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):55, 85

               
               
               Conread position:93-361
               
               
               Cow position:chr21:33718031-33717767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:98-359
               
               
               Cow position:chr21:37011765-37011496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):48, 6

               
               
               Conread position:98-378
               
               
               Cow position:chr21:28055682-28055977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:98-378
               
               
               Cow position:chr21:28729004-28729302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:111-380
               
               
               Cow position:chr21:38463501-38463767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 122

               
               
               Conread position:118-362
               
               
               Cow position:chr21:42045061-42044811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):8, 179

               
               
               Conread position:146-380
               
               
               Cow position:chr21:5182557-5182333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 7

               
               
               Conread position:148-343
               
               
               Cow position:chr21:15267370-15267569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 71

               
               
               Conread position:148-376
               
               
               Cow position:chr21:41040396-41040162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):77, 16

               
               
               Conread position:150-362
               
               
               Cow position:chr21:26530822-26530603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:157-339
               
               
               Cow position:chr21:9451949-9452136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):79, 114

               
               
               Conread position:161-378
               
               
               Cow position:chr21:2728194-2727993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:162-338
               
               
               Cow position:chr21:13416507-13416688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 10

               
               
               Conread position:162-373
               
               
               Cow position:chr21:19021321-19021118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:167-366
               
               
               Cow position:chr21:41148543-41148350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):149, 36

               
               
               Conread position:215-373
               
               
               Cow position:chr21:19690434-19690590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):94, 70

               
               
               Conread position:225-362
               
               
               Cow position:chr21:23621101-23621237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:234-372
               
               
               Cow position:chr21:32865845-32865711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:235-383
               
               
               Cow position:chr21:29471246-29471388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 29

               
               
               Conread position:252-357
               
               
               Cow position:chr21:36805715-36805614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:264-378
               
               
               Cow position:chr21:15692530-15692418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:48-352
               
               
               Cow position:chr22:8860908-8860595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):58, 39

               
               
               Conread position:50-338
               
               
               Cow position:chr22:7076392-7076681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):26, 217

               
               
               Conread position:50-374
               
               
               Cow position:chr22:2479832-2480149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):35, 151

               
               
               Conread position:50-378
               
               
               Cow position:chr22:106856-106519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 34

               
               
               Conread position:52-362
               
               
               Cow position:chr22:4254505-4254205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):119, 26

               
               
               Conread position:73-386
               
               
               Cow position:chr22:38354745-38355050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):10, 42

               
               
               Conread position:76-362
               
               
               Cow position:chr22:29833632-29833341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):71, 40

               
               
               Conread position:76-378
               
               
               Cow position:chr22:10584920-10584627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:87-343
               
               
               Cow position:chr22:7915831-7915574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):59, 79

               
               
               Conread position:87-369
               
               
               Cow position:chr22:35711646-35711358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):60, 26

               
               
               Conread position:87-374
               
               
               Cow position:chr22:19104370-19104668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):63, 90

               
               
               Conread position:87-378
               
               
               Cow position:chr22:7307623-7307326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):60, 147

               
               
               Conread position:87-388
               
               
               Cow position:chr22:28170989-28170679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):60, 151

               
               
               Conread position:88-342
               
               
               Cow position:chr22:18261624-18261867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:88-354
               
               
               Cow position:chr22:42611368-42611639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):45, 104

               
               
               Conread position:89-378
               
               
               Cow position:chr22:40257289-40257586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 35

               
               
               Conread position:90-362
               
               
               Cow position:chr22:4158642-4158376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):47, 65

               
               
               Conread position:90-378
               
               
               Cow position:chr22:42940826-42940545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):55, 31

               
               
               Conread position:91-378
               
               
               Cow position:chr22:25459669-25459370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):11, 230

               
               
               Conread position:92-362
               
               
               Cow position:chr22:702822-702555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:92-369
               
               
               Cow position:chr22:24841148-24840877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):18, 28

               
               
               Conread position:96-359
               
               
               Cow position:chr22:3766540-3766808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):51, 107

               
               
               Conread position:97-378
               
               
               Cow position:chr22:38741063-38741351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:98-323
               
               
               Cow position:chr22:3738490-3738254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:98-368
               
               
               Cow position:chr22:29609981-29609702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):30, 26

               
               
               Conread position:98-368
               
               
               Cow position:chr22:44358227-44358504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):49, 68

               
               
               Conread position:111-354
               
               
               Cow position:chr22:44634001-44634238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 91

               
               
               Conread position:119-372
               
               
               Cow position:chr22:33639309-33639048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):27, 181

               
               
               Conread position:127-378
               
               
               Cow position:chr22:25666557-25666808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:147-385
               
               
               Cow position:chr22:12000565-12000333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):83, 36

               
               
               Conread position:148-367
               
               
               Cow position:chr22:33831707-33831486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 75

               
               
               Conread position:164-361
               
               
               Cow position:chr22:7299356-7299552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:175-354
               
               
               Cow position:chr22:4364334-4364149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):46, 117

               
               
               Conread position:180-413
               
               
               Cow position:chr22:16014214-16013982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:186-353
               
               
               Cow position:chr22:8964632-8964468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):45, 25

               
               
               Conread position:204-378
               
               
               Cow position:chr22:27050115-27050287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:217-378
               
               
               Cow position:chr22:10019921-10019761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):138, 102

               
               
               Conread position:219-367
               
               
               Cow position:chr22:25627520-25627374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:229-376
               
               
               Cow position:chr22:43561273-43561416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):139, 15

               
               
               Conread position:234-378
               
               
               Cow position:chr22:16553822-16553962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:242-358
               
               
               Cow position:chr22:11460826-11460711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:249-368
               
               
               Cow position:chr22:1767513-1767630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:62-365
               
               
               Cow position:chr23:14168251-14167936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):23, 41

               
               
               Conread position:76-358
               
               
               Cow position:chr23:37179843-37180134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 11

               
               
               Conread position:76-362
               
               
               Cow position:chr23:37320900-37321187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):13, 36

               
               
               Conread position:83-381
               
               
               Cow position:chr23:1982288-1981981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:87-339
               
               
               Cow position:chr23:14767061-14767322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):60, 186

               
               
               Conread position:87-368
               
               
               Cow position:chr23:40643295-40642994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):44, 107

               
               
               Conread position:87-369
               
               
               Cow position:chr23:37637663-37637968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):60, 32

               
               
               Conread position:87-378
               
               
               Cow position:chr23:19411633-19411921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):44, 26

               
               
               Conread position:87-380
               
               
               Cow position:chr23:4287308-4287607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):58, 114

               
               
               Conread position:87-423
               
               
               Cow position:chr23:33221812-33222155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 83

               
               
               Conread position:88-368
               
               
               Cow position:chr23:12005008-12005291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):59, 194

               
               
               Conread position:88-375
               
               
               Cow position:chr23:34550934-34551221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 59

               
               
               Conread position:88-377
               
               
               Cow position:chr23:16384876-16384578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:89-351
               
               
               Cow position:chr23:15878743-15878472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):58, 87

               
               
               Conread position:89-354
               
               
               Cow position:chr23:37627513-37627790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):58, 43

               
               
               Conread position:89-361
               
               
               Cow position:chr23:24869267-24869541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):57, 159

               
               
               Conread position:89-378
               
               
               Cow position:chr23:27671362-27671073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):57, 80

               
               
               Conread position:90-378
               
               
               Cow position:chr23:22405249-22405531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):57, 160

               
               
               Conread position:92-379
               
               
               Cow position:chr23:8242933-8242641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):55, 125

               
               
               Conread position:95-362
               
               
               Cow position:chr23:39211292-39211569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:98-380
               
               
               Cow position:chr23:16478996-16478711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):49, 24

               
               
               Conread position:135-390
               
               
               Cow position:chr23:7606212-7606473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):47, 57

               
               
               Conread position:148-378
               
               
               Cow position:chr23:37450578-37450813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):54, 44

               
               
               Conread position:148-380
               
               
               Cow position:chr23:14588017-14588253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 80

               
               
               Conread position:148-382
               
               
               Cow position:chr23:10023359-10023588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:148-386
               
               
               Cow position:chr23:14854476-14854233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):19, 140

               
               
               Conread position:150-416
               
               
               Cow position:chr23:36605753-36605479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):69, 15

               
               
               Conread position:164-370
               
               
               Cow position:chr23:16030367-16030574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):29, 12

               
               
               Conread position:165-382
               
               
               Cow position:chr23:19058261-19058044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 31

               
               
               Conread position:184-357
               
               
               Cow position:chr23:27966304-27966475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):52, 34

               
               
               Conread position:207-327
               
               
               Cow position:chr23:28188096-28188216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):44, 23

               
               
               Conread position:210-361
               
               
               Cow position:chr23:3985771-3985622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 5

               
               
               Conread position:210-378
               
               
               Cow position:chr23:4770825-4770657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):25, 38

               
               
               Conread position:215-330
               
               
               Cow position:chr23:33417132-33417245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:216-388
               
               
               Cow position:chr23:5405081-5405254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:219-381
               
               
               Cow position:chr23:20812126-20811966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:249-378
               
               
               Cow position:chr23:358814-358941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:250-376
               
               
               Cow position:chr23:28865864-28865988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):60, 38

               
               
               Conread position:255-397
               
               
               Cow position:chr23:29312977-29313121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:38-382
               
               
               Cow position:chr24:2716543-2716894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:44-378
               
               
               Cow position:chr24:37833207-37832843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):32, 144

               
               
               Conread position:84-367
               
               
               Cow position:chr24:44462963-44463256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):63, 147

               
               
               Conread position:87-362
               
               
               Cow position:chr24:5297132-5297408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):49, 135

               
               
               Conread position:87-368
               
               
               Cow position:chr24:34456372-34456669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):24, 41

               
               
               Conread position:87-372
               
               
               Cow position:chr24:32679114-32679406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):59, 174

               
               
               Conread position:88-353
               
               
               Cow position:chr24:43583715-43583981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 95

               
               
               Conread position:88-362
               
               
               Cow position:chr24:37735463-37735761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:88-372
               
               
               Cow position:chr24:23219634-23219918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 165

               
               
               Conread position:88-372
               
               
               Cow position:chr24:36358656-36358361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):61, 108

               
               
               Conread position:89-330
               
               
               Cow position:chr24:38234131-38234382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):58, 145

               
               
               Conread position:89-378
               
               
               Cow position:chr24:22879731-22879448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):58, 22

               
               
               Conread position:89-379
               
               
               Cow position:chr24:26285073-26285374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):58, 31

               
               
               Conread position:89-380
               
               
               Cow position:chr24:24483672-24483366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):58, 212

               
               
               Conread position:90-343
               
               
               Cow position:chr24:42186495-42186761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:98-376
               
               
               Cow position:chr24:21488844-21489135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 97

               
               
               Conread position:105-431
               
               
               Cow position:chr24:23252083-23251746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:108-377
               
               
               Cow position:chr24:13167377-13167099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):58, 71

               
               
               Conread position:111-369
               
               
               Cow position:chr24:11847919-11848186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 91

               
               
               Conread position:146-372
               
               
               Cow position:chr24:39838046-39837808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):73, 14

               
               
               Conread position:147-391
               
               
               Cow position:chr24:9789664-9789419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):61, 36

               
               
               Conread position:148-368
               
               
               Cow position:chr24:33496429-33496221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:154-378
               
               
               Cow position:chr24:32477753-32477980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:162-378
               
               
               Cow position:chr24:22759697-22759477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:168-358
               
               
               Cow position:chr24:15893682-15893871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 28

               
               
               Conread position:171-384
               
               
               Cow position:chr24:33463465-33463261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:215-362
               
               
               Cow position:chr24:43080960-43080815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:219-383
               
               
               Cow position:chr24:39982675-39982831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:220-366
               
               
               Cow position:chr24:21797682-21797825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:234-373
               
               
               Cow position:chr24:39546742-39546607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):116, 82

               
               
               Conread position:234-378
               
               
               Cow position:chr24:4055037-4055180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:234-378
               
               
               Cow position:chr24:44788380-44788236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:250-379
               
               
               Cow position:chr24:40760653-40760524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):61, 40

               
               
               Conread position:256-366
               
               
               Cow position:chr24:7521532-7521642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:256-373
               
               
               Cow position:chr24:40839645-40839762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:271-380
               
               
               Cow position:chr24:19005956-19005847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-377
               
               
               Cow position:chr25:16905331-16905004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):32, 58

               
               
               Conread position:73-362
               
               
               Cow position:chr25:11594069-11593774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 99

               
               
               Conread position:79-348
               
               
               Cow position:chr25:12647129-12646851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):68, 123

               
               
               Conread position:80-327
               
               
               Cow position:chr25:6005513-6005271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:80-352
               
               
               Cow position:chr25:3977485-3977739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 42

               
               
               Conread position:84-378
               
               
               Cow position:chr25:21548623-21548334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):63, 118

               
               
               Conread position:86-378
               
               
               Cow position:chr25:24731100-24731404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 276

               
               
               Conread position:87-266
               
               
               Cow position:chr25:16910491-16910304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):58, 137

               
               
               Conread position:87-346
               
               
               Cow position:chr25:5195553-5195812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):59, 157

               
               
               Conread position:87-362
               
               
               Cow position:chr25:11575808-11576083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):60, 157

               
               
               Conread position:87-370
               
               
               Cow position:chr25:11348179-11348472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):60, 9

               
               
               Conread position:87-378
               
               
               Cow position:chr25:14508608-14508304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:87-380
               
               
               Cow position:chr25:11575048-11574748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 115

               
               
               Conread position:88-328
               
               
               Cow position:chr25:15734288-15734037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):57, 113

               
               
               Conread position:88-342
               
               
               Cow position:chr25:15315269-15315008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):59, 42

               
               
               Conread position:88-373
               
               
               Cow position:chr25:26049065-26048780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:88-377
               
               
               Cow position:chr25:15270743-15271046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:88-379
               
               
               Cow position:chr25:28598799-28598500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 249

               
               
               Conread position:88-381
               
               
               Cow position:chr25:8527241-8527554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):59, 260

               
               
               Conread position:88-383
               
               
               Cow position:chr25:15236208-15236508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):57, 23

               
               
               Conread position:89-362
               
               
               Cow position:chr25:11177734-11177457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):67, 31

               
               
               Conread position:89-378
               
               
               Cow position:chr25:18919647-18919354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):34, 70

               
               
               Conread position:90-368
               
               
               Cow position:chr25:32045471-32045196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 46

               
               
               Conread position:112-364
               
               
               Cow position:chr25:13699200-13698939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:112-380
               
               
               Cow position:chr25:11901842-11901557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:112-388
               
               
               Cow position:chr25:20252112-20251840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:124-400
               
               
               Cow position:chr25:7301863-7302144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):23, 108

               
               
               Conread position:146-367
               
               
               Cow position:chr25:5130343-5130573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):35, 62

               
               
               Conread position:148-374
               
               
               Cow position:chr25:27436221-27435987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 152

               
               
               Conread position:148-376
               
               
               Cow position:chr25:2393932-2393701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):54, 48

               
               
               Conread position:157-354
               
               
               Cow position:chr25:12169312-12169513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):68, 158

               
               
               Conread position:157-379
               
               
               Cow position:chr25:26969880-26969661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:162-383
               
               
               Cow position:chr25:15424327-15424099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):35, 51

               
               
               Conread position:166-358
               
               
               Cow position:chr25:8420695-8420495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 133

               
               
               Conread position:206-344
               
               
               Cow position:chr25:16905490-16905346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):34, 23

               
               
               Conread position:208-381
               
               
               Cow position:chr25:17527587-17527415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 78

               
               
               Conread position:231-362
               
               
               Cow position:chr25:3967762-3967632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):24, 35

               
               
               Conread position:234-416
               
               
               Cow position:chr25:36360923-36361105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):116, 93

               
               
               Conread position:235-387
               
               
               Cow position:chr25:22131746-22131895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:236-377
               
               
               Cow position:chr25:26474129-26474273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:254-392
               
               
               Cow position:chr25:6751937-6752074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:45-362
               
               
               Cow position:chr26:28521365-28521684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:50-330
               
               
               Cow position:chr26:264656-264948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:76-326
               
               
               Cow position:chr26:29707521-29707770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):71, 175

               
               
               Conread position:87-362
               
               
               Cow position:chr26:7247168-7246888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 117

               
               
               Conread position:87-370
               
               
               Cow position:chr26:6289061-6289366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 134

               
               
               Conread position:87-372
               
               
               Cow position:chr26:17613300-17613594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:88-343
               
               
               Cow position:chr26:27272129-27271866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):59, 211

               
               
               Conread position:88-408
               
               
               Cow position:chr26:27540181-27540513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):24, 202

               
               
               Conread position:89-352
               
               
               Cow position:chr26:28125388-28125661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 86

               
               
               Conread position:89-361
               
               
               Cow position:chr26:22885270-22885545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):150, 59

               
               
               Conread position:89-370
               
               
               Cow position:chr26:15700903-15700628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):10, 106

               
               
               Conread position:89-376
               
               
               Cow position:chr26:2504116-2503834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):54, 113

               
               
               Conread position:89-377
               
               
               Cow position:chr26:22645983-22646279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):39, 20

               
               
               Conread position:89-378
               
               
               Cow position:chr26:10746432-10746138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 116

               
               
               Conread position:89-382
               
               
               Cow position:chr26:23152206-23152492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):58, 72

               
               
               Conread position:90-362
               
               
               Cow position:chr26:24751580-24751302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):57, 20

               
               
               Conread position:90-382
               
               
               Cow position:chr26:9372602-9372314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):111, 57

               
               
               Conread position:103-376
               
               
               Cow position:chr26:30833924-30834198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:147-368
               
               
               Cow position:chr26:13210912-13211139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):5, 60

               
               
               Conread position:161-378
               
               
               Cow position:chr26:15972162-15971947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):51, 5

               
               
               Conread position:161-378
               
               
               Cow position:chr26:19788398-19788180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):69, 22

               
               
               Conread position:165-362
               
               
               Cow position:chr26:19363781-19363578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 127

               
               
               Conread position:165-362
               
               
               Cow position:chr26:31679359-31679558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 102

               
               
               Conread position:215-362
               
               
               Cow position:chr26:7682767-7682912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 45

               
               
               Conread position:224-377
               
               
               Cow position:chr26:34539184-34539337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):6, 69

               
               
               Conread position:229-382
               
               
               Cow position:chr26:25447049-25447199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:235-362
               
               
               Cow position:chr26:22167137-22167010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:236-379
               
               
               Cow position:chr26:5210827-5210964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:76-377
               
               
               Cow position:chr27:29798677-29798370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:76-386
               
               
               Cow position:chr27:15356973-15357299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):36, 107

               
               
               Conread position:83-315
               
               
               Cow position:chr27:4363007-4362763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):64, 5

               
               
               Conread position:87-362
               
               
               Cow position:chr27:15820318-15820025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 190

               
               
               Conread position:90-380
               
               
               Cow position:chr27:27870002-27869704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):57, 275

               
               
               Conread position:91-346
               
               
               Cow position:chr27:30847403-30847139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):55, 116

               
               
               Conread position:91-351
               
               
               Cow position:chr27:22178554-22178290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):55, 91

               
               
               Conread position:91-378
               
               
               Cow position:chr27:17019006-17019304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):56, 11

               
               
               Conread position:98-358
               
               
               Cow position:chr27:14832429-14832172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):20, 82

               
               
               Conread position:108-379
               
               
               Cow position:chr27:1971373-1971642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:114-367
               
               
               Cow position:chr27:936066-935798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):33, 123

               
               
               Conread position:121-379
               
               
               Cow position:chr27:1061262-1061007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 92

               
               
               Conread position:148-383
               
               
               Cow position:chr27:17992235-17992002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):53, 18

               
               
               Conread position:150-394
               
               
               Cow position:chr27:29490374-29490625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):29, 148

               
               
               Conread position:160-365
               
               
               Cow position:chr27:18687663-18687862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):160, 63

               
               
               Conread position:166-352
               
               
               Cow position:chr27:1694127-1693947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:166-352
               
               
               Cow position:chr27:11475969-11475787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:207-334
               
               
               Cow position:chr27:18154012-18153889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:207-362
               
               
               Cow position:chr27:2478591-2478743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 53

               
               
               Conread position:215-368
               
               
               Cow position:chr27:10350605-10350757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:215-377
               
               
               Cow position:chr27:8935047-8935208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):20, 116

               
               
               Conread position:218-386
               
               
               Cow position:chr27:19044242-19044080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):17, 68

               
               
               Conread position:220-373
               
               
               Cow position:chr27:26217779-26217631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):20, 31

               
               
               Conread position:220-380
               
               
               Cow position:chr27:26445702-26445543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 110

               
               
               Conread position:224-362
               
               
               Cow position:chr27:28909329-28909462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 20

               
               
               Conread position:229-348
               
               
               Cow position:chr27:17643519-17643400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):18, 102

               
               
               Conread position:251-378
               
               
               Cow position:chr27:5476944-5476818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:263-372
               
               
               Cow position:chr27:11135245-11135352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:263-380
               
               
               Cow position:chr27:22548110-22547997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:77-368
               
               
               Cow position:chr28:34632936-34632651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):12, 82

               
               
               Conread position:87-329
               
               
               Cow position:chr28:29872140-29871897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):14, 20

               
               
               Conread position:87-354
               
               
               Cow position:chr28:3183175-3183449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):60, 130

               
               
               Conread position:87-380
               
               
               Cow position:chr28:19140839-19140540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):60, 147

               
               
               Conread position:88-336
               
               
               Cow position:chr28:16995970-16995709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:88-346
               
               
               Cow position:chr28:16221017-16221276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:88-380
               
               
               Cow position:chr28:6227862-6227554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 220

               
               
               Conread position:89-368
               
               
               Cow position:chr28:30970447-30970733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):50, 111

               
               
               Conread position:89-368
               
               
               Cow position:chr28:30984379-30984665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):50, 111

               
               
               Conread position:89-400
               
               
               Cow position:chr28:3669134-3669453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:90-373
               
               
               Cow position:chr28:14672202-14671918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 54

               
               
               Conread position:90-378
               
               
               Cow position:chr28:11406459-11406162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:91-328
               
               
               Cow position:chr28:26047897-26047651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):55, 116

               
               
               Conread position:98-381
               
               
               Cow position:chr28:1832169-1831881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):30, 23

               
               
               Conread position:100-383
               
               
               Cow position:chr28:19353525-19353252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):45, 70

               
               
               Conread position:105-402
               
               
               Cow position:chr28:22413255-22412948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):48, 111

               
               
               Conread position:111-400
               
               
               Cow position:chr28:18589392-18589691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:112-378
               
               
               Cow position:chr28:11481924-11481646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):33, 68

               
               
               Conread position:148-362
               
               
               Cow position:chr28:28196163-28196382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):55, 125

               
               
               Conread position:148-369
               
               
               Cow position:chr28:29310294-29310523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:148-373
               
               
               Cow position:chr28:18455630-18455403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:149-391
               
               
               Cow position:chr28:25522-25286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:165-376
               
               
               Cow position:chr28:4287978-4288188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:165-380
               
               
               Cow position:chr28:2866228-2866005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:168-380
               
               
               Cow position:chr28:34202495-34202707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):16, 42

               
               
               Conread position:193-405
               
               
               Cow position:chr28:34515547-34515758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):18, 80

               
               
               Conread position:217-358
               
               
               Cow position:chr28:25500578-25500438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:220-362
               
               
               Cow position:chr28:15200341-15200199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:225-385
               
               
               Cow position:chr28:13284383-13284227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):6, 40

               
               
               Conread position:229-376
               
               
               Cow position:chr28:21038426-21038572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):80, 99

               
               
               Conread position:230-380
               
               
               Cow position:chr28:5856852-5856705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:75-358
               
               
               Cow position:chr29:5758364-5758071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 34

               
               
               Conread position:76-354
               
               
               Cow position:chr29:29737172-29736882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 32

               
               
               Conread position:76-363
               
               
               Cow position:chr29:18590822-18590523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):13, 39

               
               
               Conread position:84-362
               
               
               Cow position:chr29:35047871-35047600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):65, 114

               
               
               Conread position:87-361
               
               
               Cow position:chr29:27483931-27483668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):158, 48

               
               
               Conread position:87-382
               
               
               Cow position:chr29:20464925-20465232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):60, 190

               
               
               Conread position:88-354
               
               
               Cow position:chr29:22563236-22562966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:88-380
               
               
               Cow position:chr29:36740054-36739760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):59, 165

               
               
               Conread position:89-351
               
               
               Cow position:chr29:480350-480626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 22

               
               
               Conread position:89-362
               
               
               Cow position:chr29:6172914-6173201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):56, 218

               
               
               Conread position:89-368
               
               
               Cow position:chr29:42322592-42322876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 31

               
               
               Conread position:89-373
               
               
               Cow position:chr29:17444029-17443726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):34, 20

               
               
               Conread position:90-378
               
               
               Cow position:chr29:12402679-12402973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:90-384
               
               
               Cow position:chr29:39222408-39222102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:97-377
               
               
               Cow position:chr29:30115459-30115181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):50, 9

               
               
               Conread position:98-384
               
               
               Cow position:chr29:18436049-18436339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):47, 8

               
               
               Conread position:148-352
               
               
               Cow position:chr29:40496729-40496530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):23, 40

               
               
               Conread position:148-358
               
               
               Cow position:chr29:19679898-19679687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:148-375
               
               
               Cow position:chr29:17694737-17694972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):67, 151

               
               
               Conread position:149-388
               
               
               Cow position:chr29:27614805-27614580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):206, 43

               
               
               Conread position:157-362
               
               
               Cow position:chr29:23144560-23144769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 39

               
               
               Conread position:158-372
               
               
               Cow position:chr29:8207133-8206911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):44, 38

               
               
               Conread position:164-365
               
               
               Cow position:chr29:25407535-25407328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):5, 130

               
               
               Conread position:169-378
               
               
               Cow position:chr29:659897-659690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 40

               
               
               Conread position:212-380
               
               
               Cow position:chr29:4876138-4876303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:225-380
               
               
               Cow position:chr29:37698450-37698296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:227-367
               
               
               Cow position:chr29:5705143-5705279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:250-381
               
               
               Cow position:chr29:31800130-31799998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:251-373
               
               
               Cow position:chr29:13568089-13567968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:46-340
               
               
               Cow position:chr3:23972055-23971757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):36, 128

               
               
               Conread position:50-372
               
               
               Cow position:chr3:44935194-44934878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 43

               
               
               Conread position:50-380
               
               
               Cow position:chr3:15712351-15712012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:61-378
               
               
               Cow position:chr3:1320453-1320772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):62, 24

               
               
               Conread position:75-358
               
               
               Cow position:chr3:40293393-40293097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 12

               
               
               Conread position:76-379
               
               
               Cow position:chr3:81712201-81711900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):71, 11

               
               
               Conread position:76-380
               
               
               Cow position:chr3:288304-288002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:77-392
               
               
               Cow position:chr3:27442127-27441798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):11, 245

               
               
               Conread position:80-378
               
               
               Cow position:chr3:69466934-69466631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):67, 213

               
               
               Conread position:87-345
               
               
               Cow position:chr3:73944880-73944617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):31, 116

               
               
               Conread position:87-358
               
               
               Cow position:chr3:48836680-48836961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):55, 7

               
               
               Conread position:87-362
               
               
               Cow position:chr3:48829409-48829124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):55, 7

               
               
               Conread position:87-380
               
               
               Cow position:chr3:11970819-11971110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):61, 116

               
               
               Conread position:87-383
               
               
               Cow position:chr3:7301676-7301994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 198

               
               
               Conread position:87-385
               
               
               Cow position:chr3:34838785-34838482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):60, 112

               
               
               Conread position:87-386
               
               
               Cow position:chr3:32875713-32875404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):65, 38

               
               
               Conread position:87-390
               
               
               Cow position:chr3:79051364-79051662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):298, 117

               
               
               Conread position:87-399
               
               
               Cow position:chr3:30339267-30339596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):59, 192

               
               
               Conread position:88-352
               
               
               Cow position:chr3:24226360-24226108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):100, 38

               
               
               Conread position:88-362
               
               
               Cow position:chr3:38776883-38776601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):59, 25

               
               
               Conread position:88-368
               
               
               Cow position:chr3:26820035-26820317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):57, 28

               
               
               Conread position:88-376
               
               
               Cow position:chr3:20840335-20840062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):144, 33

               
               
               Conread position:88-378
               
               
               Cow position:chr3:6678920-6678628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):105, 60

               
               
               Conread position:88-378
               
               
               Cow position:chr3:36061276-36061575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):59, 114

               
               
               Conread position:89-342
               
               
               Cow position:chr3:66925508-66925251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):54, 113

               
               
               Conread position:89-362
               
               
               Cow position:chr3:49232464-49232739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:89-362
               
               
               Cow position:chr3:52476061-52476329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 108

               
               
               Conread position:89-365
               
               
               Cow position:chr3:72048344-72048611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:89-378
               
               
               Cow position:chr3:56503286-56502991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):58, 114

               
               
               Conread position:89-380
               
               
               Cow position:chr3:48816626-48816327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:89-380
               
               
               Cow position:chr3:65744693-65744388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):23, 256

               
               
               Conread position:91-378
               
               
               Cow position:chr3:55542622-55542330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):56, 28

               
               
               Conread position:92-382
               
               
               Cow position:chr3:3533289-3533576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):133, 27

               
               
               Conread position:93-400
               
               
               Cow position:chr3:31095685-31095361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):17, 82

               
               
               Conread position:95-388
               
               
               Cow position:chr3:44392029-44391720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):52, 103

               
               
               Conread position:96-378
               
               
               Cow position:chr3:34469173-34469466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):49, 165

               
               
               Conread position:98-378
               
               
               Cow position:chr3:62437270-62436997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):49, 92

               
               
               Conread position:103-343
               
               
               Cow position:chr3:84817578-84817331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:103-378
               
               
               Cow position:chr3:15850163-15850447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):44, 123

               
               
               Conread position:112-380
               
               
               Cow position:chr3:25016194-25015912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:115-378
               
               
               Cow position:chr3:53934617-53934351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):32, 137

               
               
               Conread position:117-351
               
               
               Cow position:chr3:28910864-28910636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):31, 68

               
               
               Conread position:118-373
               
               
               Cow position:chr3:41249797-41249542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):98, 14

               
               
               Conread position:141-378
               
               
               Cow position:chr3:58861792-58862036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:147-380
               
               
               Cow position:chr3:48912940-48912705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):85, 11

               
               
               Conread position:148-362
               
               
               Cow position:chr3:22525417-22525195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):53, 48

               
               
               Conread position:148-378
               
               
               Cow position:chr3:48851769-48851554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 48

               
               
               Conread position:148-381
               
               
               Cow position:chr3:30554377-30554604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:148-385
               
               
               Cow position:chr3:79673935-79674162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:148-398
               
               
               Cow position:chr3:26481605-26481351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 75

               
               
               Conread position:148-454
               
               
               Cow position:chr3:5821009-5821303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):236, 57

               
               
               Conread position:149-380
               
               
               Cow position:chr3:81561177-81561409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 59

               
               
               Conread position:150-376
               
               
               Cow position:chr3:33804682-33804916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):22, 125

               
               
               Conread position:150-378
               
               
               Cow position:chr3:55862282-55862065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 31

               
               
               Conread position:151-364
               
               
               Cow position:chr3:69878161-69878371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):66, 79

               
               
               Conread position:160-347
               
               
               Cow position:chr3:6586393-6586586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):48, 36

               
               
               Conread position:165-378
               
               
               Cow position:chr3:28940958-28941173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):59, 131

               
               
               Conread position:165-383
               
               
               Cow position:chr3:31303367-31303146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):54, 40

               
               
               Conread position:166-361
               
               
               Cow position:chr3:58166712-58166527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:167-373
               
               
               Cow position:chr3:52858653-52858863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):51, 128

               
               
               Conread position:179-368
               
               
               Cow position:chr3:59212616-59212422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 17

               
               
               Conread position:189-378
               
               
               Cow position:chr3:2195650-2195833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 26

               
               
               Conread position:205-383
               
               
               Cow position:chr3:32308617-32308440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):52, 10

               
               
               Conread position:208-373
               
               
               Cow position:chr3:57017723-57017558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):22, 121

               
               
               Conread position:215-369
               
               
               Cow position:chr3:26015337-26015184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 76

               
               
               Conread position:215-372
               
               
               Cow position:chr3:59600596-59600752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):126, 59

               
               
               Conread position:215-378
               
               
               Cow position:chr3:22534435-22534598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):127, 70

               
               
               Conread position:215-381
               
               
               Cow position:chr3:74057269-74057430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:219-380
               
               
               Cow position:chr3:33065168-33065008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 68

               
               
               Conread position:220-378
               
               
               Cow position:chr3:7151770-7151615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:221-381
               
               
               Cow position:chr3:52847825-52847665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):53, 74

               
               
               Conread position:225-376
               
               
               Cow position:chr3:9847465-9847316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 61

               
               
               Conread position:228-391
               
               
               Cow position:chr3:68008766-68008605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):84, 42

               
               
               Conread position:229-362
               
               
               Cow position:chr3:22368485-22368615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:234-381
               
               
               Cow position:chr3:39223215-39223068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:237-362
               
               
               Cow position:chr3:29915763-29915640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):72, 53

               
               
               Conread position:251-373
               
               
               Cow position:chr3:46056659-46056778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 39

               
               
               Conread position:251-375
               
               
               Cow position:chr3:67654485-67654362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:255-375
               
               
               Cow position:chr3:3974371-3974251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):74, 35

               
               
               Conread position:263-378
               
               
               Cow position:chr3:71034700-71034814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:263-378
               
               
               Cow position:chr3:78476666-78476551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:265-367
               
               
               Cow position:chr3:50471764-50471866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:268-378
               
               
               Cow position:chr3:72968891-72968783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:46-382
               
               
               Cow position:chr4:60881779-60882128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 156

               
               
               Conread position:59-368
               
               
               Cow position:chr4:45184474-45184796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):29, 245

               
               
               Conread position:62-383
               
               
               Cow position:chr4:61416766-61416441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):14, 37

               
               
               Conread position:68-345
               
               
               Cow position:chr4:50223245-50223532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):77, 124

               
               
               Conread position:76-348
               
               
               Cow position:chr4:55914507-55914792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):15, 53

               
               
               Conread position:76-362
               
               
               Cow position:chr4:50094363-50094080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):72, 34

               
               
               Conread position:84-378
               
               
               Cow position:chr4:23852764-23853063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):63, 29

               
               
               Conread position:86-337
               
               
               Cow position:chr4:65459781-65460046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:87-338
               
               
               Cow position:chr4:44837718-44837970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 39

               
               
               Conread position:87-351
               
               
               Cow position:chr4:12004779-12004505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 107

               
               
               Conread position:87-352
               
               
               Cow position:chr4:15628257-15628517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 17

               
               
               Conread position:87-353
               
               
               Cow position:chr4:28353956-28353685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):48, 204

               
               
               Conread position:87-367
               
               
               Cow position:chr4:11534319-11534597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:87-369
               
               
               Cow position:chr4:24496760-24497053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):56, 208

               
               
               Conread position:87-376
               
               
               Cow position:chr4:10117063-10116757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):60, 192

               
               
               Conread position:87-378
               
               
               Cow position:chr4:41029780-41029478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):59, 128

               
               
               Conread position:87-379
               
               
               Cow position:chr4:31608371-31608084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):114, 60

               
               
               Conread position:87-380
               
               
               Cow position:chr4:14219626-14219930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):41, 34

               
               
               Conread position:87-386
               
               
               Cow position:chr4:17212678-17212367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 9

               
               
               Conread position:87-388
               
               
               Cow position:chr4:11576181-11575883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):75, 126

               
               
               Conread position:88-352
               
               
               Cow position:chr4:19195714-19195978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):57, 19

               
               
               Conread position:88-369
               
               
               Cow position:chr4:7998555-7998843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):83, 113

               
               
               Conread position:88-381
               
               
               Cow position:chr4:21241254-21240952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):57, 115

               
               
               Conread position:88-382
               
               
               Cow position:chr4:3593335-3593637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):59, 199

               
               
               Conread position:89-352
               
               
               Cow position:chr4:10766517-10766241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:89-361
               
               
               Cow position:chr4:69520938-69520656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):57, 15

               
               
               Conread position:89-362
               
               
               Cow position:chr4:43466458-43466740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 102

               
               
               Conread position:89-368
               
               
               Cow position:chr4:34904397-34904686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):57, 31

               
               
               Conread position:89-378
               
               
               Cow position:chr4:33211222-33211533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:89-378
               
               
               Cow position:chr4:44583717-44583419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 210

               
               
               Conread position:89-378
               
               
               Cow position:chr4:49951294-49951584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):58, 15

               
               
               Conread position:90-378
               
               
               Cow position:chr4:32053908-32053609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 123

               
               
               Conread position:90-386
               
               
               Cow position:chr4:10856901-10857209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):57, 76

               
               
               Conread position:91-383
               
               
               Cow position:chr4:43449069-43448770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):54, 16

               
               
               Conread position:93-379
               
               
               Cow position:chr4:40558742-40559033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):54, 107

               
               
               Conread position:98-372
               
               
               Cow position:chr4:53149287-53149561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):49, 72

               
               
               Conread position:100-376
               
               
               Cow position:chr4:10434354-10434630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:103-411
               
               
               Cow position:chr4:10459757-10460067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:104-362
               
               
               Cow position:chr4:23883490-23883236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:112-383
               
               
               Cow position:chr4:20570470-20570756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 136

               
               
               Conread position:116-378
               
               
               Cow position:chr4:863855-863582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):7, 87

               
               
               Conread position:127-357
               
               
               Cow position:chr4:48012556-48012318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):18, 104

               
               
               Conread position:141-397
               
               
               Cow position:chr4:35160243-35160501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):28, 166

               
               
               Conread position:147-378
               
               
               Cow position:chr4:5190310-5190075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 24

               
               
               Conread position:148-361
               
               
               Cow position:chr4:67441218-67441013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):54, 48

               
               
               Conread position:148-376
               
               
               Cow position:chr4:32533274-32533044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):81, 71

               
               
               Conread position:148-376
               
               
               Cow position:chr4:39782561-39782324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:148-381
               
               
               Cow position:chr4:53916268-53916031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:152-362
               
               
               Cow position:chr4:49454141-49454346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:157-382
               
               
               Cow position:chr4:41058843-41058612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):65, 15

               
               
               Conread position:162-378
               
               
               Cow position:chr4:43952937-43952726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):39, 27

               
               
               Conread position:163-400
               
               
               Cow position:chr4:26963925-26964170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 111

               
               
               Conread position:168-384
               
               
               Cow position:chr4:44114099-44114309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 40

               
               
               Conread position:204-366
               
               
               Cow position:chr4:9989364-9989204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:207-358
               
               
               Cow position:chr4:51892204-51892055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 39

               
               
               Conread position:207-362
               
               
               Cow position:chr4:57594526-57594681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):16, 69

               
               
               Conread position:207-395
               
               
               Cow position:chr4:25589322-25589130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 21

               
               
               Conread position:214-372
               
               
               Cow position:chr4:32290004-32289842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):118, 70

               
               
               Conread position:215-357
               
               
               Cow position:chr4:61512545-61512686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):16, 74

               
               
               Conread position:220-354
               
               
               Cow position:chr4:39127592-39127723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 71

               
               
               Conread position:229-372
               
               
               Cow position:chr4:13681889-13681747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:229-379
               
               
               Cow position:chr4:16947459-16947607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):83, 56

               
               
               Conread position:234-378
               
               
               Cow position:chr4:68039334-68039477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:236-381
               
               
               Cow position:chr4:28440965-28440819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):19, 28

               
               
               Conread position:238-384
               
               
               Cow position:chr4:15971592-15971447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:251-384
               
               
               Cow position:chr4:46026096-46025965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 39

               
               
               Conread position:49-381
               
               
               Cow position:chr5:23947829-23948167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 64

               
               
               Conread position:50-378
               
               
               Cow position:chr5:31601454-31601785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):35, 43

               
               
               Conread position:60-331
               
               
               Cow position:chr5:9908837-9908564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 131

               
               
               Conread position:74-348
               
               
               Cow position:chr5:28550570-28550844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 26

               
               
               Conread position:75-381
               
               
               Cow position:chr5:45738854-45739166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):34, 103

               
               
               Conread position:76-340
               
               
               Cow position:chr5:29363676-29363401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 51

               
               
               Conread position:76-376
               
               
               Cow position:chr5:36429128-36429445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):25, 130

               
               
               Conread position:80-370
               
               
               Cow position:chr5:2875053-2875354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):53, 7

               
               
               Conread position:82-373
               
               
               Cow position:chr5:55276311-55276016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 7

               
               
               Conread position:86-369
               
               
               Cow position:chr5:31250821-31250526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):61, 80

               
               
               Conread position:87-330
               
               
               Cow position:chr5:21120993-21121234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):60, 164

               
               
               Conread position:87-358
               
               
               Cow position:chr5:72558213-72558493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):58, 39

               
               
               Conread position:87-362
               
               
               Cow position:chr5:34057501-34057784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:87-370
               
               
               Cow position:chr5:48104034-48104328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:87-378
               
               
               Cow position:chr5:27410323-27410618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):117, 141

               
               
               Conread position:87-378
               
               
               Cow position:chr5:50719852-50719555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):15, 120

               
               
               Conread position:87-380
               
               
               Cow position:chr5:48384993-48384700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):112, 139

               
               
               Conread position:87-381
               
               
               Cow position:chr5:37939237-37939517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):48, 62

               
               
               Conread position:88-348
               
               
               Cow position:chr5:19295881-19295613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):59, 91

               
               
               Conread position:88-354
               
               
               Cow position:chr5:39988876-39988603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):59, 31

               
               
               Conread position:88-354
               
               
               Cow position:chr5:75238637-75238899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):60, 23

               
               
               Conread position:88-362
               
               
               Cow position:chr5:33304853-33305120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):59, 94

               
               
               Conread position:88-362
               
               
               Cow position:chr5:67672867-67672577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:88-365
               
               
               Cow position:chr5:23961834-23962121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):57, 114

               
               
               Conread position:88-371
               
               
               Cow position:chr5:43925735-43925442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):59, 154

               
               
               Conread position:88-377
               
               
               Cow position:chr5:30075467-30075165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 158

               
               
               Conread position:88-378
               
               
               Cow position:chr5:25042662-25042946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:89-353
               
               
               Cow position:chr5:61622965-61623240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 108

               
               
               Conread position:89-377
               
               
               Cow position:chr5:37842321-37842618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):41, 20

               
               
               Conread position:91-379
               
               
               Cow position:chr5:30834888-30834593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):56, 111

               
               
               Conread position:92-378
               
               
               Cow position:chr5:40340198-40339910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):54, 28

               
               
               Conread position:93-372
               
               
               Cow position:chr5:5402596-5402871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):52, 129

               
               
               Conread position:94-370
               
               
               Cow position:chr5:69494897-69495162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):60, 36

               
               
               Conread position:98-342
               
               
               Cow position:chr5:17354968-17355221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:101-386
               
               
               Cow position:chr5:40071477-40071760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 124

               
               
               Conread position:106-367
               
               
               Cow position:chr5:5453353-5453095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 91

               
               
               Conread position:106-378
               
               
               Cow position:chr5:15604847-15605128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):41, 119

               
               
               Conread position:111-378
               
               
               Cow position:chr5:35956867-35957141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 66

               
               
               Conread position:114-378
               
               
               Cow position:chr5:14310030-14310292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 51

               
               
               Conread position:127-357
               
               
               Cow position:chr5:48119027-48118780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):21, 12

               
               
               Conread position:148-372
               
               
               Cow position:chr5:22195888-22196110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):53, 28

               
               
               Conread position:148-379
               
               
               Cow position:chr5:21933368-21933582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:148-390
               
               
               Cow position:chr5:29832013-29831770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 21

               
               
               Conread position:150-372
               
               
               Cow position:chr5:3600573-3600355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):52, 41

               
               
               Conread position:150-378
               
               
               Cow position:chr5:48250801-48251030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:160-375
               
               
               Cow position:chr5:66717531-66717306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):40, 6

               
               
               Conread position:162-372
               
               
               Cow position:chr5:49363729-49363513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:162-378
               
               
               Cow position:chr5:14292531-14292741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):188, 87

               
               
               Conread position:171-377
               
               
               Cow position:chr5:68345418-68345625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):67, 28

               
               
               Conread position:171-417
               
               
               Cow position:chr5:39021839-39022093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 70

               
               
               Conread position:184-353
               
               
               Cow position:chr5:24484516-24484349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:204-376
               
               
               Cow position:chr5:43493433-43493602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 20

               
               
               Conread position:211-370
               
               
               Cow position:chr5:36412894-36413049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:215-333
               
               
               Cow position:chr5:41198559-41198442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:215-376
               
               
               Cow position:chr5:3958381-3958223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):16, 76

               
               
               Conread position:215-376
               
               
               Cow position:chr5:36452719-36452561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):36, 24

               
               
               Conread position:215-397
               
               
               Cow position:chr5:26671920-26671743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):167, 73

               
               
               Conread position:220-381
               
               
               Cow position:chr5:17931409-17931251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:232-352
               
               
               Cow position:chr5:6738017-6738136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:232-372
               
               
               Cow position:chr5:31734196-31734056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):32, 48

               
               
               Conread position:233-357
               
               
               Cow position:chr5:2498924-2498800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-376
               
               
               Cow position:chr5:58520769-58520625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:235-394
               
               
               Cow position:chr5:30571719-30571562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):124, 53

               
               
               Conread position:250-372
               
               
               Cow position:chr5:18285602-18285481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:250-414
               
               
               Cow position:chr5:3982868-3982706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):130, 40

               
               
               Conread position:260-354
               
               
               Cow position:chr5:40912836-40912928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:260-376
               
               
               Cow position:chr5:14094371-14094256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:260-381
               
               
               Cow position:chr5:34474408-34474529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:263-378
               
               
               Cow position:chr5:44892927-44892813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:40-382
               
               
               Cow position:chr6:15651728-15652089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):70, 261

               
               
               Conread position:54-400
               
               
               Cow position:chr6:8127883-8127540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):159, 20

               
               
               Conread position:76-343
               
               
               Cow position:chr6:67034917-67034641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):71, 112

               
               
               Conread position:76-372
               
               
               Cow position:chr6:54387179-54386873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:76-378
               
               
               Cow position:chr6:23701500-23701812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):71, 12

               
               
               Conread position:84-358
               
               
               Cow position:chr6:58258019-58258305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 89

               
               
               Conread position:87-354
               
               
               Cow position:chr6:22974915-22974656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):58, 93

               
               
               Conread position:87-362
               
               
               Cow position:chr6:29298167-29298443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):22, 144

               
               
               Conread position:87-362
               
               
               Cow position:chr6:29300437-29300713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):22, 144

               
               
               Conread position:87-368
               
               
               Cow position:chr6:43784679-43784387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):59, 235

               
               
               Conread position:87-370
               
               
               Cow position:chr6:47606598-47606306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):60, 197

               
               
               Conread position:87-381
               
               
               Cow position:chr6:47813199-47813494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):60, 32

               
               
               Conread position:88-362
               
               
               Cow position:chr6:29868425-29868709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):59, 94

               
               
               Conread position:88-369
               
               
               Cow position:chr6:18872133-18871838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):59, 19

               
               
               Conread position:88-376
               
               
               Cow position:chr6:23687679-23687389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 115

               
               
               Conread position:88-378
               
               
               Cow position:chr6:40111847-40112148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:88-380
               
               
               Cow position:chr6:46375641-46375338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 108

               
               
               Conread position:88-381
               
               
               Cow position:chr6:68653378-68653684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):59, 216

               
               
               Conread position:88-389
               
               
               Cow position:chr6:23493779-23493472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 94

               
               
               Conread position:88-390
               
               
               Cow position:chr6:8461644-8461950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):59, 113

               
               
               Conread position:88-401
               
               
               Cow position:chr6:64273180-64273492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):81, 146

               
               
               Conread position:89-348
               
               
               Cow position:chr6:30340976-30340710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):52, 113

               
               
               Conread position:89-348
               
               
               Cow position:chr6:62850582-62850854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 115

               
               
               Conread position:89-378
               
               
               Cow position:chr6:21338513-21338222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):58, 88

               
               
               Conread position:89-378
               
               
               Cow position:chr6:30280485-30280786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:89-380
               
               
               Cow position:chr6:34700137-34700420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):57, 135

               
               
               Conread position:89-381
               
               
               Cow position:chr6:1081939-1081645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):58, 115

               
               
               Conread position:90-358
               
               
               Cow position:chr6:2954478-2954756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 182

               
               
               Conread position:90-378
               
               
               Cow position:chr6:8149050-8148761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):138, 16

               
               
               Conread position:90-378
               
               
               Cow position:chr6:42150013-42149730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):57, 40

               
               
               Conread position:90-380
               
               
               Cow position:chr6:18126246-18126531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:90-398
               
               
               Cow position:chr6:51896445-51896140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):64, 121

               
               
               Conread position:92-368
               
               
               Cow position:chr6:3603302-3603016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):55, 94

               
               
               Conread position:98-346
               
               
               Cow position:chr6:58453630-58453377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):48, 195

               
               
               Conread position:98-352
               
               
               Cow position:chr6:67831178-67830915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):49, 131

               
               
               Conread position:98-378
               
               
               Cow position:chr6:5101092-5100817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):49, 78

               
               
               Conread position:103-381
               
               
               Cow position:chr6:62268055-62267771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):42, 94

               
               
               Conread position:104-371
               
               
               Cow position:chr6:15741083-15740809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):111, 54

               
               
               Conread position:110-371
               
               
               Cow position:chr6:48557757-48558017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):30, 93

               
               
               Conread position:112-368
               
               
               Cow position:chr6:9248529-9248790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 124

               
               
               Conread position:112-378
               
               
               Cow position:chr6:6527614-6527893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):23, 193

               
               
               Conread position:113-380
               
               
               Cow position:chr6:50559501-50559770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):32, 56

               
               
               Conread position:148-354
               
               
               Cow position:chr6:38756520-38756729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 23

               
               
               Conread position:148-361
               
               
               Cow position:chr6:16745025-16744817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):27, 53

               
               
               Conread position:148-368
               
               
               Cow position:chr6:45114562-45114336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 90

               
               
               Conread position:148-378
               
               
               Cow position:chr6:18098700-18098934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:148-380
               
               
               Cow position:chr6:37778612-37778372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 188

               
               
               Conread position:148-381
               
               
               Cow position:chr6:16717190-16716966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 16

               
               
               Conread position:148-383
               
               
               Cow position:chr6:49715308-49715549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):84, 16

               
               
               Conread position:148-393
               
               
               Cow position:chr6:28844909-28845158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):74, 237

               
               
               Conread position:148-394
               
               
               Cow position:chr6:51427100-51426852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):86, 53

               
               
               Conread position:165-380
               
               
               Cow position:chr6:29572687-29572909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):36, 13

               
               
               Conread position:184-381
               
               
               Cow position:chr6:23436643-23436449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 32

               
               
               Conread position:194-362
               
               
               Cow position:chr6:24265381-24265211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):25, 43

               
               
               Conread position:205-355
               
               
               Cow position:chr6:58059232-58059083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):140, 11

               
               
               Conread position:212-362
               
               
               Cow position:chr6:39585021-39585169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):97, 52

               
               
               Conread position:215-331
               
               
               Cow position:chr6:55517766-55517881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):16, 45

               
               
               Conread position:215-362
               
               
               Cow position:chr6:14787615-14787470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:215-380
               
               
               Cow position:chr6:27679391-27679227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:215-383
               
               
               Cow position:chr6:24464711-24464544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:216-354
               
               
               Cow position:chr6:12673557-12673420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:221-373
               
               
               Cow position:chr6:50961911-50961759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:224-375
               
               
               Cow position:chr6:60060400-60060253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:234-378
               
               
               Cow position:chr6:60481904-60482044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:235-354
               
               
               Cow position:chr6:46457125-46457242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:235-386
               
               
               Cow position:chr6:44489371-44489518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:250-362
               
               
               Cow position:chr6:25337454-25337341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:19-380
               
               
               Cow position:chr7:57021522-57021157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):19, 28

               
               
               Conread position:33-342
               
               
               Cow position:chr7:48094678-48094990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):58, 63

               
               
               Conread position:49-330
               
               
               Cow position:chr7:44473771-44473477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):24, 134

               
               
               Conread position:49-357
               
               
               Cow position:chr7:59301315-59301644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):29, 257

               
               
               Conread position:50-378
               
               
               Cow position:chr7:39638012-39637689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 91

               
               
               Conread position:76-378
               
               
               Cow position:chr7:26620013-26620314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 10

               
               
               Conread position:76-380
               
               
               Cow position:chr7:38676136-38675830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):69, 35

               
               
               Conread position:76-389
               
               
               Cow position:chr7:21600268-21600593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:77-322
               
               
               Cow position:chr7:38374573-38374824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):69, 11

               
               
               Conread position:77-362
               
               
               Cow position:chr7:44077072-44077373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):27, 159

               
               
               Conread position:80-378
               
               
               Cow position:chr7:1211621-1211914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):68, 41

               
               
               Conread position:83-335
               
               
               Cow position:chr7:24066412-24066664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):65, 154

               
               
               Conread position:86-378
               
               
               Cow position:chr7:31112101-31112394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):61, 25

               
               
               Conread position:87-328
               
               
               Cow position:chr7:52586198-52585948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):63, 45

               
               
               Conread position:87-356
               
               
               Cow position:chr7:13063089-13062821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):60, 115

               
               
               Conread position:87-376
               
               
               Cow position:chr7:25295263-25295564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):58, 91

               
               
               Conread position:87-377
               
               
               Cow position:chr7:51527434-51527738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):58, 49

               
               
               Conread position:87-378
               
               
               Cow position:chr7:6067496-6067182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):58, 195

               
               
               Conread position:87-378
               
               
               Cow position:chr7:7556950-7557238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):30, 109

               
               
               Conread position:87-383
               
               
               Cow position:chr7:37433412-37433104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 116

               
               
               Conread position:87-385
               
               
               Cow position:chr7:54086823-54086518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:88-362
               
               
               Cow position:chr7:45963015-45962733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):75, 159

               
               
               Conread position:88-366
               
               
               Cow position:chr7:2409916-2409628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):59, 85

               
               
               Conread position:88-376
               
               
               Cow position:chr7:62096651-62096366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 70

               
               
               Conread position:88-392
               
               
               Cow position:chr7:58793140-58793441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):59, 114

               
               
               Conread position:90-365
               
               
               Cow position:chr7:7520759-7520480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):55, 92

               
               
               Conread position:92-358
               
               
               Cow position:chr7:52878534-52878811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 113

               
               
               Conread position:92-373
               
               
               Cow position:chr7:36917862-36917598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):109, 65

               
               
               Conread position:98-362
               
               
               Cow position:chr7:19366700-19366966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):50, 123

               
               
               Conread position:98-389
               
               
               Cow position:chr7:63376191-63376485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 78

               
               
               Conread position:111-362
               
               
               Cow position:chr7:53815-54085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:114-366
               
               
               Cow position:chr7:8497943-8497685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):32, 90

               
               
               Conread position:114-369
               
               
               Cow position:chr7:9469287-9469018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:121-378
               
               
               Cow position:chr7:31116267-31116000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):26, 81

               
               
               Conread position:127-378
               
               
               Cow position:chr7:37003555-37003802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:148-380
               
               
               Cow position:chr7:17392504-17392741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 121

               
               
               Conread position:148-414
               
               
               Cow position:chr7:63594213-63594480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):14, 52

               
               
               Conread position:151-362
               
               
               Cow position:chr7:38080630-38080413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):70, 54

               
               
               Conread position:157-372
               
               
               Cow position:chr7:19656287-19656078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:157-376
               
               
               Cow position:chr7:48560561-48560772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:159-362
               
               
               Cow position:chr7:8134125-8133923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:164-384
               
               
               Cow position:chr7:37439728-37439935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:180-381
               
               
               Cow position:chr7:14978438-14978641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 47

               
               
               Conread position:203-380
               
               
               Cow position:chr7:33012449-33012620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 26

               
               
               Conread position:207-369
               
               
               Cow position:chr7:19972080-19972242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:210-381
               
               
               Cow position:chr7:6535134-6534964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:215-351
               
               
               Cow position:chr7:55476726-55476593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:219-384
               
               
               Cow position:chr7:36066333-36066496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 47

               
               
               Conread position:224-378
               
               
               Cow position:chr7:15571433-15571281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):7, 62

               
               
               Conread position:230-378
               
               
               Cow position:chr7:26951523-26951376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:253-379
               
               
               Cow position:chr7:31639761-31639883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:254-373
               
               
               Cow position:chr7:9369254-9369137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:263-362
               
               
               Cow position:chr7:13973267-13973169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:44-377
               
               
               Cow position:chr8:10628321-10628665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):41, 6

               
               
               Conread position:48-376
               
               
               Cow position:chr8:27319545-27319855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 45

               
               
               Conread position:49-384
               
               
               Cow position:chr8:40079103-40079437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):120, 38

               
               
               Conread position:50-453
               
               
               Cow position:chr8:56717287-56717692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):97, 27

               
               
               Conread position:62-343
               
               
               Cow position:chr8:3208327-3208042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):26, 110

               
               
               Conread position:76-361
               
               
               Cow position:chr8:34510664-34510372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):72, 97

               
               
               Conread position:77-380
               
               
               Cow position:chr8:20883718-20883402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):12, 227

               
               
               Conread position:79-342
               
               
               Cow position:chr8:30558995-30558720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:83-368
               
               
               Cow position:chr8:24115356-24115643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):64, 123

               
               
               Conread position:84-348
               
               
               Cow position:chr8:54860442-54860708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):135, 64

               
               
               Conread position:87-347
               
               
               Cow position:chr8:45812980-45812705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):62, 214

               
               
               Conread position:87-372
               
               
               Cow position:chr8:34833142-34833431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):28, 10

               
               
               Conread position:87-373
               
               
               Cow position:chr8:2274946-2275244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):13, 18

               
               
               Conread position:87-378
               
               
               Cow position:chr8:13957231-13957529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):60, 95

               
               
               Conread position:87-378
               
               
               Cow position:chr8:56559469-56559163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):60, 274

               
               
               Conread position:87-380
               
               
               Cow position:chr8:30540122-30539824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):62, 115

               
               
               Conread position:87-380
               
               
               Cow position:chr8:51510289-51509978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 139

               
               
               Conread position:88-378
               
               
               Cow position:chr8:5860993-5860697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):59, 51

               
               
               Conread position:88-378
               
               
               Cow position:chr8:9820207-9819902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:88-378
               
               
               Cow position:chr8:22449153-22449441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):111, 33

               
               
               Conread position:88-380
               
               
               Cow position:chr8:59958355-59958062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):51, 144

               
               
               Conread position:89-317
               
               
               Cow position:chr8:1761548-1761773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):32, 115

               
               
               Conread position:89-348
               
               
               Cow position:chr8:8737959-8737710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 102

               
               
               Conread position:89-351
               
               
               Cow position:chr8:53786500-53786774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):62, 86

               
               
               Conread position:89-375
               
               
               Cow position:chr8:50471969-50471675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):110, 75

               
               
               Conread position:89-382
               
               
               Cow position:chr8:40065882-40066175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):58, 81

               
               
               Conread position:90-368
               
               
               Cow position:chr8:45525255-45525541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):57, 145

               
               
               Conread position:90-378
               
               
               Cow position:chr8:18294437-18294169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):33, 51

               
               
               Conread position:90-378
               
               
               Cow position:chr8:29433882-29433589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):67, 93

               
               
               Conread position:91-378
               
               
               Cow position:chr8:47148134-47148416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:106-380
               
               
               Cow position:chr8:36955538-36955821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):39, 91

               
               
               Conread position:117-378
               
               
               Cow position:chr8:16770678-16770949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):45, 79

               
               
               Conread position:126-348
               
               
               Cow position:chr8:55336263-55336499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):19, 56

               
               
               Conread position:148-358
               
               
               Cow position:chr8:51192455-51192669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:148-376
               
               
               Cow position:chr8:60681937-60681717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):163, 69

               
               
               Conread position:148-379
               
               
               Cow position:chr8:33623518-33623738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:157-376
               
               
               Cow position:chr8:46108389-46108611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 39

               
               
               Conread position:162-353
               
               
               Cow position:chr8:13919423-13919232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:162-377
               
               
               Cow position:chr8:55362815-55363035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):73, 164

               
               
               Conread position:176-344
               
               
               Cow position:chr8:23913003-23912830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 120

               
               
               Conread position:208-362
               
               
               Cow position:chr8:43430872-43430721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:215-354
               
               
               Cow position:chr8:24374621-24374479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):126, 63

               
               
               Conread position:215-354
               
               
               Cow position:chr8:59332473-59332337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):20, 71

               
               
               Conread position:215-362
               
               
               Cow position:chr8:21305696-21305839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:215-377
               
               
               Cow position:chr8:24699484-24699645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:217-354
               
               
               Cow position:chr8:59348194-59348058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):27, 35

               
               
               Conread position:219-378
               
               
               Cow position:chr8:17507612-17507769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):121, 71

               
               
               Conread position:220-358
               
               
               Cow position:chr8:37890743-37890611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 97

               
               
               Conread position:220-373
               
               
               Cow position:chr8:29410374-29410224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 62

               
               
               Conread position:232-378
               
               
               Cow position:chr8:53819655-53819800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:234-386
               
               
               Cow position:chr8:32227616-32227765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):75, 51

               
               
               Conread position:235-362
               
               
               Cow position:chr8:4511088-4510965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:237-357
               
               
               Cow position:chr8:9579380-9579263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:241-383
               
               
               Cow position:chr8:32564260-32564119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:250-362
               
               
               Cow position:chr8:13487009-13486899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:251-388
               
               
               Cow position:chr8:30120494-30120358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):61, 33

               
               
               Conread position:263-378
               
               
               Cow position:chr8:4356107-4356222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:50-352
               
               
               Cow position:chr9:31262001-31261677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 115

               
               
               Conread position:50-352
               
               
               Cow position:chr9:56511624-56511942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):35, 259

               
               
               Conread position:74-378
               
               
               Cow position:chr9:49745796-49746103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):20, 131

               
               
               Conread position:77-378
               
               
               Cow position:chr9:12382355-12382048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):14, 148

               
               
               Conread position:84-354
               
               
               Cow position:chr9:28331616-28331325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):5, 228

               
               
               Conread position:87-378
               
               
               Cow position:chr9:11362116-11361818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:87-378
               
               
               Cow position:chr9:22711889-22711606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:87-394
               
               
               Cow position:chr9:44178316-44178004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):60, 32

               
               
               Conread position:88-349
               
               
               Cow position:chr9:14349173-14348913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):61, 171

               
               
               Conread position:88-364
               
               
               Cow position:chr9:41021311-41021591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):58, 114

               
               
               Conread position:88-372
               
               
               Cow position:chr9:21252208-21251913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:88-378
               
               
               Cow position:chr9:45607035-45607327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):59, 90

               
               
               Conread position:88-378
               
               
               Cow position:chr9:46284443-46284743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):61, 213

               
               
               Conread position:88-378
               
               
               Cow position:chr9:51554138-51554440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):57, 198

               
               
               Conread position:89-337
               
               
               Cow position:chr9:23391449-23391200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):58, 111

               
               
               Conread position:89-362
               
               
               Cow position:chr9:14385642-14385922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):58, 132

               
               
               Conread position:89-368
               
               
               Cow position:chr9:31136722-31137006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):68, 108

               
               
               Conread position:89-381
               
               
               Cow position:chr9:50768232-50768524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):57, 20

               
               
               Conread position:89-383
               
               
               Cow position:chr9:30332286-30331992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):58, 160

               
               
               Conread position:90-358
               
               
               Cow position:chr9:15994881-15995154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 47

               
               
               Conread position:90-362
               
               
               Cow position:chr9:27332181-27331908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):61, 86

               
               
               Conread position:90-370
               
               
               Cow position:chr9:49860122-49859829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):59, 172

               
               
               Conread position:91-378
               
               
               Cow position:chr9:12692695-12692997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):56, 112

               
               
               Conread position:93-357
               
               
               Cow position:chr9:46592391-46592652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):54, 32

               
               
               Conread position:98-339
               
               
               Cow position:chr9:9604105-9604341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):49, 103

               
               
               Conread position:100-378
               
               
               Cow position:chr9:50583859-50584148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 132

               
               
               Conread position:103-371
               
               
               Cow position:chr9:46248353-46248081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:107-364
               
               
               Cow position:chr9:40278701-40278964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 67

               
               
               Conread position:111-348
               
               
               Cow position:chr9:57632832-57632597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 83

               
               
               Conread position:111-385
               
               
               Cow position:chr9:28831989-28832265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 15

               
               
               Conread position:112-378
               
               
               Cow position:chr9:46492564-46492285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):35, 9

               
               
               Conread position:127-488
               
               
               Cow position:chr9:34006827-34007194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 78

               
               
               Conread position:148-372
               
               
               Cow position:chr9:55028105-55028336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:148-402
               
               
               Cow position:chr9:2353933-2354188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 32

               
               
               Conread position:150-383
               
               
               Cow position:chr9:55328491-55328251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 144

               
               
               Conread position:166-378
               
               
               Cow position:chr9:19001984-19001785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:167-373
               
               
               Cow position:chr9:17721026-17721236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):53, 166

               
               
               Conread position:167-378
               
               
               Cow position:chr9:12334515-12334723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 48

               
               
               Conread position:203-388
               
               
               Cow position:chr9:50193235-50193418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 21

               
               
               Conread position:207-389
               
               
               Cow position:chr9:15020700-15020886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 69

               
               
               Conread position:208-369
               
               
               Cow position:chr9:954675-954517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):142, 5

               
               
               Conread position:215-386
               
               
               Cow position:chr9:12413030-12412860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 50

               
               
               Conread position:216-369
               
               
               Cow position:chr9:58345375-58345229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:219-376
               
               
               Cow position:chr9:13301247-13301095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 67

               
               
               Conread position:220-379
               
               
               Cow position:chr9:55004151-55004309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 39

               
               
               Conread position:222-368
               
               
               Cow position:chr9:13012647-13012790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:224-367
               
               
               Cow position:chr9:36513291-36513149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):7, 53

               
               
               Conread position:234-378
               
               
               Cow position:chr9:24201028-24201170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:234-379
               
               
               Cow position:chr9:47710581-47710438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):20, 62

               
               
               Conread position:234-381
               
               
               Cow position:chr9:12449197-12449344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-357
               
               
               Cow position:chr9:15821610-15821490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):74, 49

               
               
               Conread position:235-384
               
               
               Cow position:chr9:47714332-47714185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):74, 50

               
               
               Conread position:245-376
               
               
               Cow position:chr9:8835019-8834888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:260-382
               
               
               Cow position:chr9:48246085-48246205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:261-381
               
               
               Cow position:chr9:12992084-12992202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:263-378
               
               
               Cow position:chr9:42055022-42055137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:48-405
               
               
               Cow position:chrX:13184647-13184286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):99, 18

               
               
               Conread position:53-369
               
               
               Cow position:chrX:7878728-7879076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):37, 21

               
               
               Conread position:58-378
               
               
               Cow position:chrX:6444093-6443760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):66, 16

               
               
               Conread position:60-377
               
               
               Cow position:chrX:28818626-28818294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 126

               
               
               Conread position:76-342
               
               
               Cow position:chrX:28822597-28822316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):72, 129

               
               
               Conread position:76-376
               
               
               Cow position:chrX:27379661-27379361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):123, 45

               
               
               Conread position:76-378
               
               
               Cow position:chrX:33762330-33762638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):71, 189

               
               
               Conread position:77-327
               
               
               Cow position:chrX:25361472-25361211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 199

               
               
               Conread position:80-348
               
               
               Cow position:chrX:18133896-18133626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:80-352
               
               
               Cow position:chrX:20370675-20370391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):67, 120

               
               
               Conread position:80-362
               
               
               Cow position:chrX:33779420-33779716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:80-383
               
               
               Cow position:chrX:26701175-26700859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):66, 121

               
               
               Conread position:81-372
               
               
               Cow position:chrX:38890545-38890244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:83-380
               
               
               Cow position:chrX:15757269-15756965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):94, 63

               
               
               Conread position:87-362
               
               
               Cow position:chrX:8468719-8468455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):85, 19

               
               
               Conread position:87-372
               
               
               Cow position:chrX:35810114-35809836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:87-377
               
               
               Cow position:chrX:4280621-4280319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):58, 89

               
               
               Conread position:87-378
               
               
               Cow position:chrX:6612627-6612942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 115

               
               
               Conread position:87-378
               
               
               Cow position:chrX:39878065-39878373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):59, 196

               
               
               Conread position:87-380
               
               
               Cow position:chrX:25444209-25444502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):126, 61

               
               
               Conread position:87-380
               
               
               Cow position:chrX:38413928-38414243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):60, 115

               
               
               Conread position:87-381
               
               
               Cow position:chrX:34795479-34795175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):60, 24

               
               
               Conread position:88-312
               
               
               Cow position:chrX:38639937-38640169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 198

               
               
               Conread position:88-352
               
               
               Cow position:chrX:29524781-29524506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 88

               
               
               Conread position:88-370
               
               
               Cow position:chrX:10990063-10989773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):55, 132

               
               
               Conread position:89-348
               
               
               Cow position:chrX:36101497-36101762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):56, 113

               
               
               Conread position:89-378
               
               
               Cow position:chrX:4084777-4085067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):58, 7

               
               
               Conread position:89-383
               
               
               Cow position:chrX:43786540-43786238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):69, 283

               
               
               Conread position:89-385
               
               
               Cow position:chrX:8929375-8929676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):63, 184

               
               
               Conread position:89-389
               
               
               Cow position:chrX:35551813-35552114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):57, 137

               
               
               Conread position:90-366
               
               
               Cow position:chrX:7996239-7996520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):59, 29

               
               
               Conread position:90-385
               
               
               Cow position:chrX:25152187-25151893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):57, 44

               
               
               Conread position:90-400
               
               
               Cow position:chrX:29475989-29475673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):53, 86

               
               
               Conread position:91-378
               
               
               Cow position:chrX:41241388-41241102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):57, 91

               
               
               Conread position:91-378
               
               
               Cow position:chrX:41243327-41243600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):54, 133

               
               
               Conread position:92-354
               
               
               Cow position:chrX:7431647-7431911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):66, 118

               
               
               Conread position:92-372
               
               
               Cow position:chrX:7897058-7897342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:93-362
               
               
               Cow position:chrX:17622074-17621790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):12, 107

               
               
               Conread position:94-369
               
               
               Cow position:chrX:46794056-46794326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):55, 42

               
               
               Conread position:98-378
               
               
               Cow position:chrX:32030331-32030610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):104, 8

               
               
               Conread position:112-382
               
               
               Cow position:chrX:9293399-9293119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 225

               
               
               Conread position:113-376
               
               
               Cow position:chrX:41341813-41342074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):45, 69

               
               
               Conread position:143-378
               
               
               Cow position:chrX:13231486-13231247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 96

               
               
               Conread position:148-362
               
               
               Cow position:chrX:31770304-31770517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):61, 44

               
               
               Conread position:148-372
               
               
               Cow position:chrX:25974772-25974999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):86, 26

               
               
               Conread position:148-378
               
               
               Cow position:chrX:1707107-1707330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):89, 59

               
               
               Conread position:148-383
               
               
               Cow position:chrX:30732478-30732719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):53, 122

               
               
               Conread position:148-389
               
               
               Cow position:chrX:31266060-31265815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):102, 79

               
               
               Conread position:148-451
               
               
               Cow position:chrX:23897206-23897511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:184-362
               
               
               Cow position:chrX:15333290-15333112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):36, 62

               
               
               Conread position:204-361
               
               
               Cow position:chrX:41260867-41260713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:209-379
               
               
               Cow position:chrX:36078500-36078667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):98, 10

               
               
               Conread position:211-362
               
               
               Cow position:chrX:46071381-46071231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 55

               
               
               Conread position:211-378
               
               
               Cow position:chrX:45456991-45457159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:215-362
               
               
               Cow position:chrX:2877190-2877044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:218-348
               
               
               Cow position:chrX:26637933-26637810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:219-396
               
               
               Cow position:chrX:2180335-2180512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 106

               
               
               Conread position:220-352
               
               
               Cow position:chrX:1703511-1703380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:224-380
               
               
               Cow position:chrX:4606833-4606678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):85, 104

               
               
               Conread position:229-380
               
               
               Cow position:chrX:6083568-6083717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:232-381
               
               
               Cow position:chrX:22111751-22111604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:234-368
               
               
               Cow position:chrX:38206924-38206790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-378
               
               
               Cow position:chrX:11012780-11012639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:235-378
               
               
               Cow position:chrX:35228391-35228534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:235-380
               
               
               Cow position:chrX:9405078-9404936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 82

               
               
               Conread position:250-358
               
               
               Cow position:chrX:24592145-24592039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:250-405
               
               
               Cow position:chrX:17713634-17713787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:259-370
               
               
               Cow position:chrX:11478682-11478571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:259-382
               
               
               Cow position:chrX:27088969-27089086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:260-414
               
               
               Cow position:chrX:24936483-24936327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):120, 72

               
               
               Conread position:270-369
               
               
               Cow position:chrX:29534263-29534362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0
Conread position:	43-334
Cow position:	chr1:48454521-48454226 (view UCSC Genome Browser custom track)
Alignm length:	302
Alignm identity:	212
Alignm E-value:	3e-34
Alignm gaps (pig, cow):	31, 7
Conread position:	43-367
Cow position:	chr1:73744733-73745070 (view UCSC Genome Browser custom track)
Alignm length:	344
Alignm identity:	235
Alignm E-value:	8e-33
Alignm gaps (pig, cow):	44, 5
Conread position:	50-382
Cow position:	chr1:95069651-95069305 (view UCSC Genome Browser custom track)
Alignm length:	349
Alignm identity:	227
Alignm E-value:	1e-27
Alignm gaps (pig, cow):	42, 137
Conread position:	54-381
Cow position:	chr1:32906326-32906668 (view UCSC Genome Browser custom track)
Alignm length:	349
Alignm identity:	235
Alignm E-value:	3e-25
Alignm gaps (pig, cow):	43, 31
Conread position:	61-378
Cow position:	chr1:49435389-49435063 (view UCSC Genome Browser custom track)
Alignm length:	332
Alignm identity:	221
Alignm E-value:	5e-29
Alignm gaps (pig, cow):	17, 65
Conread position:	62-368
Cow position:	chr1:2427291-2426978 (view UCSC Genome Browser custom track)
Alignm length:	318
Alignm identity:	206
Alignm E-value:	8e-23
Alignm gaps (pig, cow):	29, 100
Conread position:	74-372
Cow position:	chr1:93796002-93795699 (view UCSC Genome Browser custom track)
Alignm length:	307
Alignm identity:	200
Alignm E-value:	1e-27
Alignm gaps (pig, cow):	73, 38
Conread position:	75-378
Cow position:	chr1:58873750-58874064 (view UCSC Genome Browser custom track)
Alignm length:	320
Alignm identity:	218
Alignm E-value:	5e-29
Alignm gaps (pig, cow):	72, 146
Conread position:	75-380
Cow position:	chr1:67651459-67651140 (view UCSC Genome Browser custom track)
Alignm length:	321
Alignm identity:	229
Alignm E-value:	2.94273e-44
Alignm gaps (pig, cow):	14, 37
Conread position:	76-354
Cow position:	chr1:77723708-77723420 (view UCSC Genome Browser custom track)
Alignm length:	293
Alignm identity:	203
Alignm E-value:	6e-30
Alignm gaps (pig, cow):	67, 33
Conread position:	76-358
Cow position:	chr1:63085582-63085879 (view UCSC Genome Browser custom track)
Alignm length:	299
Alignm identity:	202
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	71, 24
Conread position:	76-372
Cow position:	chr1:43820543-43820240 (view UCSC Genome Browser custom track)
Alignm length:	307
Alignm identity:	209
Alignm E-value:	9e-34
Alignm gaps (pig, cow):	71, 156
Conread position:	76-383
Cow position:	chr1:50874169-50874480 (view UCSC Genome Browser custom track)
Alignm length:	317
Alignm identity:	204
Alignm E-value:	3e-23
Alignm gaps (pig, cow):	47, 13
Conread position:	77-347
Cow position:	chr1:3408512-3408790 (view UCSC Genome Browser custom track)
Alignm length:	281
Alignm identity:	198
Alignm E-value:	3e-35
Alignm gaps (pig, cow):	66, 109
Conread position:	77-368
Cow position:	chr1:35756233-35756529 (view UCSC Genome Browser custom track)
Alignm length:	298
Alignm identity:	188
Alignm E-value:	8e-22
Alignm gaps (pig, cow):	78, 123
Conread position:	79-378
Cow position:	chr1:74014665-74014348 (view UCSC Genome Browser custom track)
Alignm length:	321
Alignm identity:	216
Alignm E-value:	4e-26
Alignm gaps (pig, cow):	68, 264
Conread position:	81-369
Cow position:	chr1:2962594-2962881 (view UCSC Genome Browser custom track)
Alignm length:	298
Alignm identity:	202
Alignm E-value:	1e-25
Alignm gaps (pig, cow):	7, 112
Conread position:	84-376
Cow position:	chr1:62623696-62623991 (view UCSC Genome Browser custom track)
Alignm length:	306
Alignm identity:	209
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	67, 117
Conread position:	84-378
Cow position:	chr1:56821215-56820904 (view UCSC Genome Browser custom track)
Alignm length:	313
Alignm identity:	210
Alignm E-value:	4e-27
Alignm gaps (pig, cow):	63, 117
Conread position:	87-326
Cow position:	chr1:57042756-57042993 (view UCSC Genome Browser custom track)
Alignm length:	249
Alignm identity:	175
Alignm E-value:	3e-24
Alignm gaps (pig, cow):	113, 54