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Cow genome map

           
Conread name:
           
Ss1.1-Pig3-SRG8011J04.3
        

               
Conread position:
               
1-176
               

               
Cow position:
               
chr1:83147125-83146945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr1:39065378-39065758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 88
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr1:77791350-77791739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr1:69304104-69303724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
123, 21
               

               
Conread position:
               
2-314
               

               
Cow position:
               
chr1:49985519-49985215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
72, 117
               

               
Conread position:
               
3-371
               

               
Cow position:
               
chr1:73500726-73500339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
69, 159
               

               
Conread position:
               
12-194
               

               
Cow position:
               
chr1:4036172-4035990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
57, 11
               

               
Conread position:
               
12-386
               

               
Cow position:
               
chr1:12066940-12066576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
50, 101
               

               
Conread position:
               
12-386
               

               
Cow position:
               
chr1:47788403-47788784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
49, 96
               

               
Conread position:
               
12-386
               

               
Cow position:
               
chr1:60416688-60417068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 53
               

               
Conread position:
               
12-397
               

               
Cow position:
               
chr1:61717465-61717862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 23
               

               
Conread position:
               
31-371
               

               
Cow position:
               
chr1:92905364-92905725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
93, 349
               

               
Conread position:
               
33-386
               

               
Cow position:
               
chr1:10709651-10709279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
34, 353
               

               
Conread position:
               
33-386
               

               
Cow position:
               
chr1:84596112-84595736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 342
               

               
Conread position:
               
49-371
               

               
Cow position:
               
chr1:20260609-20260289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
75, 46
               

               
Conread position:
               
72-385
               

               
Cow position:
               
chr1:54122433-54122122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
50, 29
               

               
Conread position:
               
102-378
               

               
Cow position:
               
chr1:85846521-85846803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
22, 152
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr1:40726421-40726612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
95, 53
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr1:61704702-61704880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
55, 23
               

               
Conread position:
               
183-372
               

               
Cow position:
               
chr1:85639484-85639296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
38, 60
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr1:89893685-89893888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
175, 59
               

               
Conread position:
               
186-368
               

               
Cow position:
               
chr1:10957627-10957444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
46, 57
               

               
Conread position:
               
186-386
               

               
Cow position:
               
chr1:5993888-5993674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
186-389
               

               
Cow position:
               
chr1:3015677-3015884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
186-389
               

               
Cow position:
               
chr1:5381506-5381315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
172, 39
               

               
Conread position:
               
192-356
               

               
Cow position:
               
chr1:102533267-102533104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 55
               

               
Conread position:
               
203-339
               

               
Cow position:
               
chr1:83146889-83146747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
215-364
               

               
Cow position:
               
chr1:88336843-88336694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
226-371
               

               
Cow position:
               
chr1:54598391-54598246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
230-370
               

               
Cow position:
               
chr1:92039055-92038916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 12
               

               
Conread position:
               
230-371
               

               
Cow position:
               
chr1:99248666-99248806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
69, 52
               

               
Conread position:
               
230-386
               

               
Cow position:
               
chr1:100500431-100500588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
265-389
               

               
Cow position:
               
chr1:92959700-92959818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
268-389
               

               
Cow position:
               
chr1:62812953-62812831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
273-386
               

               
Cow position:
               
chr1:77822565-77822452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
284-386
               

               
Cow position:
               
chr1:4035665-4035563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
837-999
               

               
Cow position:
               
chr1:261756-261594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
26, 73
               

               
Conread position:
               
851-994
               

               
Cow position:
               
chr1:4412204-4412345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr10:42981511-42981719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
54, 159
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr10:46173779-46174156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
57, 210
               

               
Conread position:
               
2-364
               

               
Cow position:
               
chr10:5289022-5288663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 234
               

               
Conread position:
               
2-369
               

               
Cow position:
               
chr10:64834514-64834906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
65, 120
               

               
Conread position:
               
7-371
               

               
Cow position:
               
chr10:23146351-23145974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 18
               

               
Conread position:
               
13-371
               

               
Cow position:
               
chr10:11076151-11076512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 14
               

               
Conread position:
               
26-364
               

               
Cow position:
               
chr10:33993361-33993694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
30-352
               

               
Cow position:
               
chr10:66053726-66054063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
36, 132
               

               
Conread position:
               
83-371
               

               
Cow position:
               
chr10:29805054-29804754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
43, 70
               

               
Conread position:
               
91-343
               

               
Cow position:
               
chr10:58198609-58198861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
33, 18
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr10:22555968-22556171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 60
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr10:61613303-61613098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
53, 165
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr10:61645844-61645640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
50, 36
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr10:61695801-61696008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
14, 18
               

               
Conread position:
               
183-390
               

               
Cow position:
               
chr10:8311931-8312141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
186-308
               

               
Cow position:
               
chr10:52715141-52715263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
186-382
               

               
Cow position:
               
chr10:55869935-55870131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
50, 132
               

               
Conread position:
               
186-389
               

               
Cow position:
               
chr10:61609945-61610151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 119
               

               
Conread position:
               
239-375
               

               
Cow position:
               
chr10:69820778-69820914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
269-371
               

               
Cow position:
               
chr10:19973942-19974043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr11:20722025-20721838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
54, 91
               

               
Conread position:
               
2-341
               

               
Cow position:
               
chr11:5197921-5197600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 17
               

               
Conread position:
               
2-371
               

               
Cow position:
               
chr11:1608470-1608095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 18
               

               
Conread position:
               
2-386
               

               
Cow position:
               
chr11:53783191-53782788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
80, 265
               

               
Conread position:
               
3-371
               

               
Cow position:
               
chr11:42120185-42120554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 66
               

               
Conread position:
               
3-386
               

               
Cow position:
               
chr11:70665148-70664752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
120, 66
               

               
Conread position:
               
7-317
               

               
Cow position:
               
chr11:68450531-68450198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
145, 12
               

               
Conread position:
               
11-364
               

               
Cow position:
               
chr11:52594891-52594549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
148, 25
               

               
Conread position:
               
12-336
               

               
Cow position:
               
chr11:2079179-2078846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
55, 240
               

               
Conread position:
               
13-390
               

               
Cow position:
               
chr11:72953781-72953394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
8, 208
               

               
Conread position:
               
20-371
               

               
Cow position:
               
chr11:36164679-36165053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 240
               

               
Conread position:
               
21-370
               

               
Cow position:
               
chr11:78019283-78019613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
102, 133
               

               
Conread position:
               
23-386
               

               
Cow position:
               
chr11:39076033-39075662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
34, 87
               

               
Conread position:
               
24-182
               

               
Cow position:
               
chr11:25651555-25651397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
33-386
               

               
Cow position:
               
chr11:35647582-35647219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
28, 167
               

               
Conread position:
               
67-371
               

               
Cow position:
               
chr11:1690289-1690600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
5, 29
               

               
Conread position:
               
81-370
               

               
Cow position:
               
chr11:2701772-2701476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
43, 28
               

               
Conread position:
               
97-371
               

               
Cow position:
               
chr11:2856552-2856832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
19, 136
               

               
Conread position:
               
109-371
               

               
Cow position:
               
chr11:65404280-65404552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
21, 128
               

               
Conread position:
               
125-386
               

               
Cow position:
               
chr11:42240362-42240619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
65, 35
               

               
Conread position:
               
183-356
               

               
Cow position:
               
chr11:63986919-63987092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
183-374
               

               
Cow position:
               
chr11:1296516-1296323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 60
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr11:47746470-47746679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 97
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr11:63658775-63658565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
185-371
               

               
Cow position:
               
chr11:63990433-63990617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
134, 52
               

               
Conread position:
               
187-387
               

               
Cow position:
               
chr11:60138676-60138478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
202-364
               

               
Cow position:
               
chr11:10105942-10106107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
30, 41
               

               
Conread position:
               
219-372
               

               
Cow position:
               
chr11:82115065-82115218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
231-396
               

               
Cow position:
               
chr11:25651215-25651048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
142, 127
               

               
Conread position:
               
242-386
               

               
Cow position:
               
chr11:37164252-37164107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
735-993
               

               
Cow position:
               
chr11:22401875-22401620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
858-994
               

               
Cow position:
               
chr11:52268066-52267931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
102, 49
               

               
Conread position:
               
2-389
               

               
Cow position:
               
chr12:26503366-26502953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 101
               

               
Conread position:
               
9-405
               

               
Cow position:
               
chr12:34991150-34990753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 340
               

               
Conread position:
               
12-182
               

               
Cow position:
               
chr12:13980038-13980208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
110, 8
               

               
Conread position:
               
13-258
               

               
Cow position:
               
chr12:17647207-17646940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
22-294
               

               
Cow position:
               
chr12:38686937-38687221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
102, 47
               

               
Conread position:
               
33-389
               

               
Cow position:
               
chr12:39644835-39644459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 75
               

               
Conread position:
               
45-386
               

               
Cow position:
               
chr12:21955216-21954855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
20, 115
               

               
Conread position:
               
102-355
               

               
Cow position:
               
chr12:22681919-22682189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 57
               

               
Conread position:
               
110-386
               

               
Cow position:
               
chr12:4605056-4604769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
22, 75
               

               
Conread position:
               
203-378
               

               
Cow position:
               
chr12:37322217-37322039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
225-371
               

               
Cow position:
               
chr12:13980803-13980941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
821-994
               

               
Cow position:
               
chr12:23276065-23275889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
32, 88
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr13:17168319-17168047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
72, 61
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr13:18645174-18645550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 34
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr13:21432934-21433339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 117
               

               
Conread position:
               
2-325
               

               
Cow position:
               
chr13:52753168-52752837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 77
               

               
Conread position:
               
2-364
               

               
Cow position:
               
chr13:19449343-19448973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
52, 20
               

               
Conread position:
               
2-371
               

               
Cow position:
               
chr13:32313945-32314328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 22
               

               
Conread position:
               
2-386
               

               
Cow position:
               
chr13:18323253-18323643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 273
               

               
Conread position:
               
12-371
               

               
Cow position:
               
chr13:36906257-36905870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
50, 117
               

               
Conread position:
               
12-383
               

               
Cow position:
               
chr13:42715833-42715438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 111
               

               
Conread position:
               
12-386
               

               
Cow position:
               
chr13:19469148-19468786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 178
               

               
Conread position:
               
23-386
               

               
Cow position:
               
chr13:55562636-55563010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 99
               

               
Conread position:
               
30-185
               

               
Cow position:
               
chr13:43733344-43733188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
81, 141
               

               
Conread position:
               
34-182
               

               
Cow position:
               
chr13:11228689-11228839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
40-184
               

               
Cow position:
               
chr13:20911552-20911701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
50-386
               

               
Cow position:
               
chr13:60174157-60174515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
13, 43
               

               
Conread position:
               
102-387
               

               
Cow position:
               
chr13:52766148-52765858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
22, 93
               

               
Conread position:
               
181-386
               

               
Cow position:
               
chr13:34055749-34055955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
183-364
               

               
Cow position:
               
chr13:11228870-11229053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr13:20911732-20911922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
40, 123
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr13:17762236-17762432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
38, 120
               

               
Conread position:
               
184-371
               

               
Cow position:
               
chr13:40114638-40114826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
185-385
               

               
Cow position:
               
chr13:23439782-23439978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
124, 43
               

               
Conread position:
               
186-371
               

               
Cow position:
               
chr13:5738-5927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
11, 15
               

               
Conread position:
               
186-371
               

               
Cow position:
               
chr13:56694484-56694670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
186-372
               

               
Cow position:
               
chr13:52050317-52050495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
203-354
               

               
Cow position:
               
chr13:43733133-43732981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
273-371
               

               
Cow position:
               
chr13:10019511-10019413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr14:13050547-13050921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 23
               

               
Conread position:
               
2-182
               

               
Cow position:
               
chr14:5417471-5417658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
12-289
               

               
Cow position:
               
chr14:3034151-3034424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 96
               

               
Conread position:
               
12-386
               

               
Cow position:
               
chr14:28989835-28990209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 87
               

               
Conread position:
               
13-371
               

               
Cow position:
               
chr14:38215665-38216041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 308
               

               
Conread position:
               
13-373
               

               
Cow position:
               
chr14:36162082-36162433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 54
               

               
Conread position:
               
33-386
               

               
Cow position:
               
chr14:43781340-43780980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 97
               

               
Conread position:
               
66-342
               

               
Cow position:
               
chr14:17214005-17213718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
51, 43
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr14:20695990-20695801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
183-384
               

               
Cow position:
               
chr14:5417689-5417895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
38, 64
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr14:25950517-25950328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
175, 36
               

               
Conread position:
               
186-371
               

               
Cow position:
               
chr14:20583520-20583342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 77
               

               
Conread position:
               
220-384
               

               
Cow position:
               
chr14:2032547-2032714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
60, 22
               

               
Conread position:
               
226-364
               

               
Cow position:
               
chr14:20587424-20587286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
226-386
               

               
Cow position:
               
chr14:44209930-44209771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
132, 16
               

               
Conread position:
               
238-353
               

               
Cow position:
               
chr14:8693168-8693283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
825-1005
               

               
Cow position:
               
chr14:30051661-30051837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 21
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr15:29511891-29511511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 63
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr15:31949749-31950147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 153
               

               
Conread position:
               
2-384
               

               
Cow position:
               
chr15:229292-228893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 171
               

               
Conread position:
               
20-371
               

               
Cow position:
               
chr15:38505517-38505892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 220
               

               
Conread position:
               
24-390
               

               
Cow position:
               
chr15:22127528-22127143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
100, 238
               

               
Conread position:
               
25-351
               

               
Cow position:
               
chr15:1343685-1343352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 41
               

               
Conread position:
               
25-386
               

               
Cow position:
               
chr15:5406344-5405973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 287
               

               
Conread position:
               
33-371
               

               
Cow position:
               
chr15:35611446-35611795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 34
               

               
Conread position:
               
33-372
               

               
Cow position:
               
chr15:53035175-53035530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 227
               

               
Conread position:
               
33-397
               

               
Cow position:
               
chr15:5236950-5237322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
35, 258
               

               
Conread position:
               
40-383
               

               
Cow position:
               
chr15:10855332-10855678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 27
               

               
Conread position:
               
51-386
               

               
Cow position:
               
chr15:30553264-30552914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
10, 284
               

               
Conread position:
               
79-377
               

               
Cow position:
               
chr15:39819858-39820164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 27
               

               
Conread position:
               
97-369
               

               
Cow position:
               
chr15:10325504-10325780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
27, 154
               

               
Conread position:
               
183-389
               

               
Cow position:
               
chr15:10562650-10562451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
206-371
               

               
Cow position:
               
chr15:9745711-9745875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
207-362
               

               
Cow position:
               
chr15:660385-660235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
101, 10
               

               
Conread position:
               
220-386
               

               
Cow position:
               
chr15:32303893-32303725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
10, 166
               

               
Conread position:
               
235-370
               

               
Cow position:
               
chr15:27249983-27249851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
239-371
               

               
Cow position:
               
chr15:15230826-15230700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
5, 31
               

               
Conread position:
               
854-995
               

               
Cow position:
               
chr15:9413928-9414066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
87, 53
               

               
Conread position:
               
859-989
               

               
Cow position:
               
chr15:10624797-10624671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr16:10672262-10672646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 200
               

               
Conread position:
               
1-389
               

               
Cow position:
               
chr16:15925147-15924761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
140, 50
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chr16:53441854-53442136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
124, 44
               

               
Conread position:
               
12-371
               

               
Cow position:
               
chr16:33472104-33471761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
119, 24
               

               
Conread position:
               
14-308
               

               
Cow position:
               
chr16:17883441-17883735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
53, 134
               

               
Conread position:
               
19-380
               

               
Cow position:
               
chr16:35204105-35204474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 72
               

               
Conread position:
               
23-176
               

               
Cow position:
               
chr16:53591097-53591255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 142
               

               
Conread position:
               
24-325
               

               
Cow position:
               
chr16:15224295-15224599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
108, 33
               

               
Conread position:
               
30-371
               

               
Cow position:
               
chr16:4898133-4898468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
204, 43
               

               
Conread position:
               
31-336
               

               
Cow position:
               
chr16:8507646-8507954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
45, 89
               

               
Conread position:
               
36-386
               

               
Cow position:
               
chr16:8455973-8456338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
30, 79
               

               
Conread position:
               
51-401
               

               
Cow position:
               
chr16:16126432-16126786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
73, 55
               

               
Conread position:
               
54-371
               

               
Cow position:
               
chr16:54483155-54482821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
13, 192
               

               
Conread position:
               
54-386
               

               
Cow position:
               
chr16:16719673-16720012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 62
               

               
Conread position:
               
72-386
               

               
Cow position:
               
chr16:21662760-21662435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
35, 105
               

               
Conread position:
               
75-386
               

               
Cow position:
               
chr16:326783-326453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
49, 95
               

               
Conread position:
               
76-371
               

               
Cow position:
               
chr16:33472469-33472774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
48, 107
               

               
Conread position:
               
183-379
               

               
Cow position:
               
chr16:8852279-8852089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
186-371
               

               
Cow position:
               
chr16:21439904-21439714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
8, 15
               

               
Conread position:
               
186-386
               

               
Cow position:
               
chr16:31532561-31532766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
230-370
               

               
Cow position:
               
chr16:33279509-33279369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
238-434
               

               
Cow position:
               
chr16:11600907-11601103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
141, 170
               

               
Conread position:
               
249-372
               

               
Cow position:
               
chr16:52106478-52106355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
252-386
               

               
Cow position:
               
chr16:52642959-52642826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
276-371
               

               
Cow position:
               
chr16:30617723-30617818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
865-994
               

               
Cow position:
               
chr16:25844970-25845096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr17:21332226-21332394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
122, 12
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr17:23512583-23512971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 243
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr17:24846391-24846040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
54, 105
               

               
Conread position:
               
2-377
               

               
Cow position:
               
chr17:30472366-30472746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 158
               

               
Conread position:
               
3-386
               

               
Cow position:
               
chr17:906025-905625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 50
               

               
Conread position:
               
11-182
               

               
Cow position:
               
chr17:35314456-35314627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
50, 9
               

               
Conread position:
               
12-301
               

               
Cow position:
               
chr17:5904356-5904061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
67, 85
               

               
Conread position:
               
12-371
               

               
Cow position:
               
chr17:1368720-1368351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 154
               

               
Conread position:
               
12-371
               

               
Cow position:
               
chr17:3496135-3495784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
23, 147
               

               
Conread position:
               
12-371
               

               
Cow position:
               
chr17:26774840-26775221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 8
               

               
Conread position:
               
13-371
               

               
Cow position:
               
chr17:27176510-27176124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
49, 11
               

               
Conread position:
               
22-222
               

               
Cow position:
               
chr17:2028589-2028787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
81, 95
               

               
Conread position:
               
24-182
               

               
Cow position:
               
chr17:27762340-27762502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 86
               

               
Conread position:
               
35-386
               

               
Cow position:
               
chr17:9316709-9317070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
50-386
               

               
Cow position:
               
chr17:8244196-8244545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
68, 19
               

               
Conread position:
               
69-386
               

               
Cow position:
               
chr17:13455900-13455580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
53, 116
               

               
Conread position:
               
74-386
               

               
Cow position:
               
chr17:1239665-1239980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
50, 180
               

               
Conread position:
               
183-370
               

               
Cow position:
               
chr17:25102922-25102734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr17:851907-852100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
51, 60
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr17:27722096-27721888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 21
               

               
Conread position:
               
228-371
               

               
Cow position:
               
chr17:21818759-21818619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
5, 82
               

               
Conread position:
               
235-371
               

               
Cow position:
               
chr17:36072342-36072205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
247-386
               

               
Cow position:
               
chr17:21332536-21332675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
844-983
               

               
Cow position:
               
chr17:43080756-43080619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
852-994
               

               
Cow position:
               
chr17:26731535-26731395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
137, 48
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr18:43622987-43622814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
57, 121
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr18:36132227-36131868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
63, 12
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr18:56263840-56263469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 173
               

               
Conread position:
               
1-746
               

               
Cow position:
               
chr18:50044491-50045227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
555
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 69
               

               
Conread position:
               
2-305
               

               
Cow position:
               
chr18:19420947-19421243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
114, 87
               

               
Conread position:
               
2-371
               

               
Cow position:
               
chr18:35513600-35513223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 75
               

               
Conread position:
               
8-374
               

               
Cow position:
               
chr18:29654640-29654264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 261
               

               
Conread position:
               
12-143
               

               
Cow position:
               
chr18:35863529-35863393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
12-304
               

               
Cow position:
               
chr18:703981-704285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
47, 61
               

               
Conread position:
               
12-386
               

               
Cow position:
               
chr18:16096472-16096092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 8
               

               
Conread position:
               
12-386
               

               
Cow position:
               
chr18:16370827-16370437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
49, 113
               

               
Conread position:
               
13-383
               

               
Cow position:
               
chr18:35039442-35039040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
8, 102
               

               
Conread position:
               
13-386
               

               
Cow position:
               
chr18:34430767-34431167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
19, 152
               

               
Conread position:
               
17-185
               

               
Cow position:
               
chr18:16085734-16085904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
23-306
               

               
Cow position:
               
chr18:45116121-45115837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
44, 166
               

               
Conread position:
               
23-385
               

               
Cow position:
               
chr18:2787843-2788209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 34
               

               
Conread position:
               
30-386
               

               
Cow position:
               
chr18:22185971-22185599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 35
               

               
Conread position:
               
31-283
               

               
Cow position:
               
chr18:51021620-51021864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
153, 74
               

               
Conread position:
               
35-331
               

               
Cow position:
               
chr18:49974055-49974373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
33, 88
               

               
Conread position:
               
37-370
               

               
Cow position:
               
chr18:1882828-1883173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
35, 116
               

               
Conread position:
               
41-351
               

               
Cow position:
               
chr18:46025503-46025164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
28, 176
               

               
Conread position:
               
63-493
               

               
Cow position:
               
chr18:37166087-37165648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
61, 95
               

               
Conread position:
               
78-353
               

               
Cow position:
               
chr18:35946117-35945842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 65
               

               
Conread position:
               
127-382
               

               
Cow position:
               
chr18:12260112-12259852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
63, 122
               

               
Conread position:
               
128-371
               

               
Cow position:
               
chr18:39193306-39193559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
50, 79
               

               
Conread position:
               
148-371
               

               
Cow position:
               
chr18:44248972-44248754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 70
               

               
Conread position:
               
182-343
               

               
Cow position:
               
chr18:53659630-53659783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr18:39192381-39192570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
38, 176
               

               
Conread position:
               
183-382
               

               
Cow position:
               
chr18:42730801-42731008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
38, 61
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr18:35861851-35861647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
199-371
               

               
Cow position:
               
chr18:39278284-39278450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
203-386
               

               
Cow position:
               
chr18:12290114-12289932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
226-370
               

               
Cow position:
               
chr18:54382652-54382511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
90, 41
               

               
Conread position:
               
230-371
               

               
Cow position:
               
chr18:22616038-22616178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
107, 12
               

               
Conread position:
               
230-386
               

               
Cow position:
               
chr18:16086002-16086153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
150, 71
               

               
Conread position:
               
230-393
               

               
Cow position:
               
chr18:39194437-39194602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
89, 44
               

               
Conread position:
               
243-386
               

               
Cow position:
               
chr18:48859066-48858926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
92, 25
               

               
Conread position:
               
747-959
               

               
Cow position:
               
chr18:50045463-50045674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr19:21160559-21160186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 12
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr19:40500201-40499818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
60, 214
               

               
Conread position:
               
2-371
               

               
Cow position:
               
chr19:21381711-21381364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
121, 64
               

               
Conread position:
               
12-176
               

               
Cow position:
               
chr19:53257223-53257387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
58, 135
               

               
Conread position:
               
12-281
               

               
Cow position:
               
chr19:56169817-56169549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
93, 50
               

               
Conread position:
               
12-371
               

               
Cow position:
               
chr19:8928868-8928495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
61, 77
               

               
Conread position:
               
13-325
               

               
Cow position:
               
chr19:44111280-44111604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
39, 54
               

               
Conread position:
               
24-372
               

               
Cow position:
               
chr19:14733075-14733437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 223
               

               
Conread position:
               
24-386
               

               
Cow position:
               
chr19:33349092-33348717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 215
               

               
Conread position:
               
26-371
               

               
Cow position:
               
chr19:52391079-52391428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
53, 147
               

               
Conread position:
               
48-386
               

               
Cow position:
               
chr19:28007441-28007104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
136, 20
               

               
Conread position:
               
71-391
               

               
Cow position:
               
chr19:49105178-49105491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
49, 122
               

               
Conread position:
               
75-372
               

               
Cow position:
               
chr19:52686684-52687006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
36, 192
               

               
Conread position:
               
118-386
               

               
Cow position:
               
chr19:51318059-51317781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
11, 111
               

               
Conread position:
               
128-371
               

               
Cow position:
               
chr19:45886413-45886167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
54, 97
               

               
Conread position:
               
183-361
               

               
Cow position:
               
chr19:24250503-24250679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 60
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr19:32888444-32888634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
44, 61
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr19:35600825-35600621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
39, 48
               

               
Conread position:
               
230-379
               

               
Cow position:
               
chr19:19619916-19619764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
45, 12
               

               
Conread position:
               
239-371
               

               
Cow position:
               
chr19:53818200-53818068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
115, 47
               

               
Conread position:
               
843-993
               

               
Cow position:
               
chr19:3598457-3598604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr2:45907803-45907982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
114, 66
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr2:12921928-12922313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 39
               

               
Conread position:
               
2-360
               

               
Cow position:
               
chr2:42212836-42213209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
73, 252
               

               
Conread position:
               
2-375
               

               
Cow position:
               
chr2:32424772-32425136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
65, 198
               

               
Conread position:
               
2-390
               

               
Cow position:
               
chr2:75547610-75547211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 312
               

               
Conread position:
               
7-315
               

               
Cow position:
               
chr2:56035541-56035221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
110, 57
               

               
Conread position:
               
7-386
               

               
Cow position:
               
chr2:76112074-76111704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
125, 66
               

               
Conread position:
               
11-184
               

               
Cow position:
               
chr2:46011341-46011524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 7
               

               
Conread position:
               
12-167
               

               
Cow position:
               
chr2:74696904-74697063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
12-254
               

               
Cow position:
               
chr2:84150757-84151012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
99, 91
               

               
Conread position:
               
12-313
               

               
Cow position:
               
chr2:32643690-32643380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
63, 134
               

               
Conread position:
               
12-341
               

               
Cow position:
               
chr2:15271735-15272074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 50
               

               
Conread position:
               
12-370
               

               
Cow position:
               
chr2:1630981-1630596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
14, 8
               

               
Conread position:
               
12-378
               

               
Cow position:
               
chr2:41273820-41273435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
58, 144
               

               
Conread position:
               
12-386
               

               
Cow position:
               
chr2:51204140-51203739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
41, 251
               

               
Conread position:
               
22-371
               

               
Cow position:
               
chr2:35658990-35658638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 51
               

               
Conread position:
               
23-324
               

               
Cow position:
               
chr2:15560280-15559969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 188
               

               
Conread position:
               
24-182
               

               
Cow position:
               
chr2:45779493-45779332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
33-385
               

               
Cow position:
               
chr2:36479038-36479392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 130
               

               
Conread position:
               
77-335
               

               
Cow position:
               
chr2:37415167-37414899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 162
               

               
Conread position:
               
93-386
               

               
Cow position:
               
chr2:78719347-78719639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
84, 28
               

               
Conread position:
               
183-369
               

               
Cow position:
               
chr2:78076380-78076562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
13, 18
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr2:41041433-41041636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr2:63795663-63795865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
38, 91
               

               
Conread position:
               
183-390
               

               
Cow position:
               
chr2:46336246-46336035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
38, 145
               

               
Conread position:
               
183-391
               

               
Cow position:
               
chr2:78727917-78728118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
175, 33
               

               
Conread position:
               
183-392
               

               
Cow position:
               
chr2:46011554-46011765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
73, 47
               

               
Conread position:
               
184-372
               

               
Cow position:
               
chr2:86189871-86190055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
186-386
               

               
Cow position:
               
chr2:66127293-66127092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 42
               

               
Conread position:
               
203-372
               

               
Cow position:
               
chr2:80430890-80431060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
215-371
               

               
Cow position:
               
chr2:7880132-7879978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
216-371
               

               
Cow position:
               
chr2:74697066-74697215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
226-399
               

               
Cow position:
               
chr2:45779234-45779059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
247-386
               

               
Cow position:
               
chr2:47176119-47175985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
264-386
               

               
Cow position:
               
chr2:44234089-44233969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
267-389
               

               
Cow position:
               
chr2:54452123-54452000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
275-386
               

               
Cow position:
               
chr2:50882923-50883034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
281-384
               

               
Cow position:
               
chr2:40969922-40970025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr20:35169435-35169047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 118
               

               
Conread position:
               
11-367
               

               
Cow position:
               
chr20:39270652-39271023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
44, 62
               

               
Conread position:
               
12-364
               

               
Cow position:
               
chr20:3865681-3865329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
50, 136
               

               
Conread position:
               
24-386
               

               
Cow position:
               
chr20:23291947-23292325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
33, 76
               

               
Conread position:
               
25-371
               

               
Cow position:
               
chr20:2805136-2805491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
102, 51
               

               
Conread position:
               
35-392
               

               
Cow position:
               
chr20:10999952-11000296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
46, 5
               

               
Conread position:
               
50-364
               

               
Cow position:
               
chr20:1411120-1411429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 107
               

               
Conread position:
               
50-374
               

               
Cow position:
               
chr20:19002390-19002058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
112, 25
               

               
Conread position:
               
66-182
               

               
Cow position:
               
chr20:23819659-23819777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
128-404
               

               
Cow position:
               
chr20:31829893-31829604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
54, 88
               

               
Conread position:
               
183-378
               

               
Cow position:
               
chr20:23819808-23819997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
182, 62
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr20:34280304-34280099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
13, 60
               

               
Conread position:
               
226-410
               

               
Cow position:
               
chr20:24091647-24091833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
23, 165
               

               
Conread position:
               
854-994
               

               
Cow position:
               
chr20:34906110-34906247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr21:7780635-7780820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr21:35094501-35094692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr21:14776170-14776373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
64, 109
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr21:11362108-11361731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 68
               

               
Conread position:
               
2-185
               

               
Cow position:
               
chr21:5542054-5542238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
121, 87
               

               
Conread position:
               
2-361
               

               
Cow position:
               
chr21:25522141-25521774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 62
               

               
Conread position:
               
3-371
               

               
Cow position:
               
chr21:17991433-17991059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 11
               

               
Conread position:
               
12-182
               

               
Cow position:
               
chr21:41591286-41591453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
110, 26
               

               
Conread position:
               
12-371
               

               
Cow position:
               
chr21:20029572-20029941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
49, 107
               

               
Conread position:
               
13-285
               

               
Cow position:
               
chr21:42593233-42592942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
8, 54
               

               
Conread position:
               
23-185
               

               
Cow position:
               
chr21:24986587-24986755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
41, 132
               

               
Conread position:
               
23-185
               

               
Cow position:
               
chr21:35146730-35146570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
100, 64
               

               
Conread position:
               
24-386
               

               
Cow position:
               
chr21:27565666-27565302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
100, 41
               

               
Conread position:
               
24-411
               

               
Cow position:
               
chr21:36812263-36812660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 191
               

               
Conread position:
               
29-364
               

               
Cow position:
               
chr21:17907556-17907901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
36-368
               

               
Cow position:
               
chr21:49628677-49629011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
40-299
               

               
Cow position:
               
chr21:4755254-4754990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
67-364
               

               
Cow position:
               
chr21:249022-248717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 51
               

               
Conread position:
               
92-386
               

               
Cow position:
               
chr21:7618087-7618394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
163-370
               

               
Cow position:
               
chr21:40817394-40817187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 39
               

               
Conread position:
               
183-361
               

               
Cow position:
               
chr21:49076244-49076419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
183-370
               

               
Cow position:
               
chr21:34062159-34061971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
162, 43
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr21:7780851-7781038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
33, 128
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr21:18154136-18154327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
36, 180
               

               
Conread position:
               
183-372
               

               
Cow position:
               
chr21:3517252-3517061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
33, 93
               

               
Conread position:
               
183-384
               

               
Cow position:
               
chr21:18132379-18132182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
38, 62
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr21:41591484-41591689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
11, 18
               

               
Conread position:
               
186-379
               

               
Cow position:
               
chr21:23903623-23903814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
172, 56
               

               
Conread position:
               
186-385
               

               
Cow position:
               
chr21:35146539-35146339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
169, 0
               

               
Conread position:
               
187-371
               

               
Cow position:
               
chr21:24986805-24986988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
93, 39
               

               
Conread position:
               
215-389
               

               
Cow position:
               
chr21:10276935-10276761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
151, 27
               

               
Conread position:
               
226-386
               

               
Cow position:
               
chr21:35094780-35094942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 67
               

               
Conread position:
               
230-386
               

               
Cow position:
               
chr21:14776645-14776792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
230-387
               

               
Cow position:
               
chr21:5026469-5026316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
242-371
               

               
Cow position:
               
chr21:3494851-3494723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
244-371
               

               
Cow position:
               
chr21:5542567-5542695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
484-649
               

               
Cow position:
               
chr21:21614635-21614804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
37, 87
               

               
Conread position:
               
821-993
               

               
Cow position:
               
chr21:14763130-14762961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
2-368
               

               
Cow position:
               
chr22:14471456-14471084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 147
               

               
Conread position:
               
2-371
               

               
Cow position:
               
chr22:10622157-10621772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 93
               

               
Conread position:
               
6-386
               

               
Cow position:
               
chr22:38174129-38174531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
8, 218
               

               
Conread position:
               
12-371
               

               
Cow position:
               
chr22:12490689-12491056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 46
               

               
Conread position:
               
12-394
               

               
Cow position:
               
chr22:26039404-26039816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
53, 250
               

               
Conread position:
               
13-371
               

               
Cow position:
               
chr22:3461066-3461447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 105
               

               
Conread position:
               
13-371
               

               
Cow position:
               
chr22:4192623-4192976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 51
               

               
Conread position:
               
24-336
               

               
Cow position:
               
chr22:15934511-15934841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
38, 240
               

               
Conread position:
               
51-386
               

               
Cow position:
               
chr22:6143679-6144024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
21, 205
               

               
Conread position:
               
103-342
               

               
Cow position:
               
chr22:6095713-6095466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr22:5598474-5598659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 18
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr22:20367323-20367133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr22:35939912-35940122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
186-371
               

               
Cow position:
               
chr22:6542926-6543112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
35, 91
               

               
Conread position:
               
186-386
               

               
Cow position:
               
chr22:13663919-13664118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
48, 137
               

               
Conread position:
               
206-386
               

               
Cow position:
               
chr22:18948389-18948572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
89, 20
               

               
Conread position:
               
229-386
               

               
Cow position:
               
chr22:43708547-43708695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
145, 36
               

               
Conread position:
               
250-372
               

               
Cow position:
               
chr22:4145736-4145857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
734-989
               

               
Cow position:
               
chr22:6262541-6262293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
16, 107
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr23:35500579-35500754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr23:29461576-29461766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
67, 157
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr23:263445-263739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
123, 153
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr23:12802510-12802829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
64, 41
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chr23:38261102-38261484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 106
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chr23:8580885-8581213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
164, 87
               

               
Conread position:
               
2-371
               

               
Cow position:
               
chr23:1937348-1936994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
119, 169
               

               
Conread position:
               
2-390
               

               
Cow position:
               
chr23:2344867-2345261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 38
               

               
Conread position:
               
13-185
               

               
Cow position:
               
chr23:5141910-5142084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
54-377
               

               
Cow position:
               
chr23:37440061-37440387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
68, 187
               

               
Conread position:
               
65-386
               

               
Cow position:
               
chr23:38545596-38545916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
141-371
               

               
Cow position:
               
chr23:33639420-33639647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
181-386
               

               
Cow position:
               
chr23:35500795-35500998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
16, 20
               

               
Conread position:
               
183-370
               

               
Cow position:
               
chr23:3838053-3837871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr23:1652198-1652012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
49, 60
               

               
Conread position:
               
183-383
               

               
Cow position:
               
chr23:19628663-19628459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
206-386
               

               
Cow position:
               
chr23:5142138-5142311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr24:2096397-2096225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
7, 107
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr24:2656251-2655897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
121, 45
               

               
Conread position:
               
2-323
               

               
Cow position:
               
chr24:42852070-42852379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 68
               

               
Conread position:
               
12-182
               

               
Cow position:
               
chr24:2205263-2205432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 35
               

               
Conread position:
               
23-354
               

               
Cow position:
               
chr24:6757092-6757423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
101, 36
               

               
Conread position:
               
23-354
               

               
Cow position:
               
chr24:6767663-6767332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
101, 36
               

               
Conread position:
               
36-371
               

               
Cow position:
               
chr24:42807006-42807358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 208
               

               
Conread position:
               
41-322
               

               
Cow position:
               
chr24:32415399-32415111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
90, 34
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr24:174281-174480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
185-348
               

               
Cow position:
               
chr24:33337533-33337703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
230-353
               

               
Cow position:
               
chr24:36431009-36431132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
269-372
               

               
Cow position:
               
chr24:27205632-27205530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
271-393
               

               
Cow position:
               
chr24:651746-651626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
854-994
               

               
Cow position:
               
chr24:15564811-15564673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
92, 46
               

               
Conread position:
               
4-182
               

               
Cow position:
               
chr25:9567828-9568000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
119, 54
               

               
Conread position:
               
12-379
               

               
Cow position:
               
chr25:36164219-36163836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 234
               

               
Conread position:
               
15-182
               

               
Cow position:
               
chr25:8598219-8598050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
21-371
               

               
Cow position:
               
chr25:37393800-37393441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 42
               

               
Conread position:
               
66-371
               

               
Cow position:
               
chr25:22264757-22265062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
58, 116
               

               
Conread position:
               
131-335
               

               
Cow position:
               
chr25:6460740-6460948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
178-371
               

               
Cow position:
               
chr25:16314262-16314075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr25:8597110-8596919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 61
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr25:21507760-21507965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
38, 60
               

               
Conread position:
               
186-407
               

               
Cow position:
               
chr25:26186707-26186484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
35, 58
               

               
Conread position:
               
206-371
               

               
Cow position:
               
chr25:27224196-27224033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
38, 14
               

               
Conread position:
               
211-371
               

               
Cow position:
               
chr25:25812773-25812615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
230-371
               

               
Cow position:
               
chr25:5788804-5788944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
232-371
               

               
Cow position:
               
chr25:5859095-5859232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
283-386
               

               
Cow position:
               
chr25:2371042-2370940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
823-986
               

               
Cow position:
               
chr25:30354197-30354033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 84
               

               
Conread position:
               
846-987
               

               
Cow position:
               
chr25:6748161-6748021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 63
               

               
Conread position:
               
860-991
               

               
Cow position:
               
chr25:26314828-26314957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr26:6832460-6832145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
72, 50
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr26:19839028-19839421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
183, 60
               

               
Conread position:
               
2-306
               

               
Cow position:
               
chr26:24734919-24735231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
122, 87
               

               
Conread position:
               
2-386
               

               
Cow position:
               
chr26:27923634-27923243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 103
               

               
Conread position:
               
12-322
               

               
Cow position:
               
chr26:3892857-3892537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 244
               

               
Conread position:
               
23-325
               

               
Cow position:
               
chr26:20549477-20549171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 40
               

               
Conread position:
               
29-286
               

               
Cow position:
               
chr26:12835139-12834874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 127
               

               
Conread position:
               
42-378
               

               
Cow position:
               
chr26:6829821-6829477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
34, 17
               

               
Conread position:
               
69-371
               

               
Cow position:
               
chr26:7717486-7717807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
63, 52
               

               
Conread position:
               
148-386
               

               
Cow position:
               
chr26:20469176-20468942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
25, 81
               

               
Conread position:
               
186-371
               

               
Cow position:
               
chr26:31926060-31925876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
191-371
               

               
Cow position:
               
chr26:32823753-32823921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
231-381
               

               
Cow position:
               
chr26:33348634-33348784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-385
               

               
Cow position:
               
chr27:12664609-12664197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
47, 75
               

               
Conread position:
               
3-386
               

               
Cow position:
               
chr27:24955175-24954796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
64, 10
               

               
Conread position:
               
11-386
               

               
Cow position:
               
chr27:11495132-11494743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
55, 27
               

               
Conread position:
               
12-199
               

               
Cow position:
               
chr27:28247403-28247589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
105, 50
               

               
Conread position:
               
12-353
               

               
Cow position:
               
chr27:13795833-13795480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 59
               

               
Conread position:
               
12-370
               

               
Cow position:
               
chr27:22258083-22258462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 12
               

               
Conread position:
               
12-386
               

               
Cow position:
               
chr27:24915156-24914769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 10
               

               
Conread position:
               
25-182
               

               
Cow position:
               
chr27:24955899-24956057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
99, 49
               

               
Conread position:
               
25-364
               

               
Cow position:
               
chr27:26818258-26817914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
43, 106
               

               
Conread position:
               
33-364
               

               
Cow position:
               
chr27:28224727-28225070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 74
               

               
Conread position:
               
74-386
               

               
Cow position:
               
chr27:13664282-13663960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
50, 80
               

               
Conread position:
               
83-371
               

               
Cow position:
               
chr27:26869046-26868757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
41, 35
               

               
Conread position:
               
84-386
               

               
Cow position:
               
chr27:11503844-11503530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
41, 22
               

               
Conread position:
               
91-372
               

               
Cow position:
               
chr27:26841369-26841074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 52
               

               
Conread position:
               
109-371
               

               
Cow position:
               
chr27:23993575-23993312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
15, 45
               

               
Conread position:
               
142-368
               

               
Cow position:
               
chr27:22851764-22851983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 31
               

               
Conread position:
               
170-371
               

               
Cow position:
               
chr27:28247884-28248079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr27:15015719-15015906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr27:24398444-24398256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
125, 182
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr27:30835173-30834970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
185-371
               

               
Cow position:
               
chr27:24956090-24956283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
186-371
               

               
Cow position:
               
chr27:30472096-30471912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
33, 45
               

               
Conread position:
               
186-389
               

               
Cow position:
               
chr27:30439544-30439748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
103, 44
               

               
Conread position:
               
203-386
               

               
Cow position:
               
chr27:15877695-15877885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
230-386
               

               
Cow position:
               
chr27:16610956-16611114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr28:22015315-22015659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
189, 15
               

               
Conread position:
               
2-371
               

               
Cow position:
               
chr28:30981933-30981568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
121, 75
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr28:4212522-4212167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 229
               

               
Conread position:
               
12-185
               

               
Cow position:
               
chr28:3409643-3409464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 80
               

               
Conread position:
               
12-201
               

               
Cow position:
               
chr28:5100313-5100506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 51
               

               
Conread position:
               
12-347
               

               
Cow position:
               
chr28:30968474-30968140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
112, 36
               

               
Conread position:
               
12-395
               

               
Cow position:
               
chr28:5309096-5309494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
22, 97
               

               
Conread position:
               
13-386
               

               
Cow position:
               
chr28:7586930-7587321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 83
               

               
Conread position:
               
23-386
               

               
Cow position:
               
chr28:24409235-24408872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
45, 99
               

               
Conread position:
               
25-371
               

               
Cow position:
               
chr28:4606534-4606880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
18, 34
               

               
Conread position:
               
39-371
               

               
Cow position:
               
chr28:1516721-1517063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 20
               

               
Conread position:
               
40-317
               

               
Cow position:
               
chr28:5895722-5896015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
18, 122
               

               
Conread position:
               
44-371
               

               
Cow position:
               
chr28:27763591-27763275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 47
               

               
Conread position:
               
66-386
               

               
Cow position:
               
chr28:22325589-22325280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
292, 23
               

               
Conread position:
               
69-386
               

               
Cow position:
               
chr28:9168913-9168583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
55, 169
               

               
Conread position:
               
70-339
               

               
Cow position:
               
chr28:3681037-3680756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
91-371
               

               
Cow position:
               
chr28:9679789-9680075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
33, 119
               

               
Conread position:
               
123-371
               

               
Cow position:
               
chr28:1188384-1188128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
12, 30
               

               
Conread position:
               
137-380
               

               
Cow position:
               
chr28:9898150-9897908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
47, 15
               

               
Conread position:
               
180-386
               

               
Cow position:
               
chr28:16355328-16355530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
175, 20
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr28:3713542-3713361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
88, 43
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr28:3409436-3409243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
172, 78
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr28:22310869-22310669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
175, 47
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr28:22337788-22337585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
51, 60
               

               
Conread position:
               
203-386
               

               
Cow position:
               
chr28:3172113-3171927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
231-371
               

               
Cow position:
               
chr28:5100566-5100706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
231-386
               

               
Cow position:
               
chr28:13700281-13700125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
18, 146
               

               
Conread position:
               
836-994
               

               
Cow position:
               
chr28:27137478-27137322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
20, 65
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr29:38943790-38944006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
19-371
               

               
Cow position:
               
chr29:27102551-27102899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
84, 38
               

               
Conread position:
               
21-371
               

               
Cow position:
               
chr29:42479206-42478853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
99, 36
               

               
Conread position:
               
23-182
               

               
Cow position:
               
chr29:25069788-25069637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
24-316
               

               
Cow position:
               
chr29:40671647-40671343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 134
               

               
Conread position:
               
33-279
               

               
Cow position:
               
chr29:42843180-42842931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
147, 76
               

               
Conread position:
               
34-382
               

               
Cow position:
               
chr29:40734761-40734399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
37-261
               

               
Cow position:
               
chr29:42933611-42933380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
136, 54
               

               
Conread position:
               
75-371
               

               
Cow position:
               
chr29:24357827-24357521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
49, 23
               

               
Conread position:
               
78-386
               

               
Cow position:
               
chr29:377649-377963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
46, 154
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr29:25069606-25069419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr29:26220477-26220664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr29:41063563-41063748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
13, 18
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr29:1935321-1935521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
203-370
               

               
Cow position:
               
chr29:38944273-38944437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
151, 32
               

               
Conread position:
               
203-386
               

               
Cow position:
               
chr29:24184804-24184618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
18, 58
               

               
Conread position:
               
219-375
               

               
Cow position:
               
chr29:842699-842856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
30, 95
               

               
Conread position:
               
244-391
               

               
Cow position:
               
chr29:492697-492547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
854-1006
               

               
Cow position:
               
chr29:4004908-4004758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
24, 18
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr3:10422373-10421989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
63, 254
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr3:59566060-59565666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
60, 156
               

               
Conread position:
               
12-296
               

               
Cow position:
               
chr3:40790649-40790368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
114, 29
               

               
Conread position:
               
12-371
               

               
Cow position:
               
chr3:8597552-8597909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 15
               

               
Conread position:
               
21-385
               

               
Cow position:
               
chr3:26489986-26490347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
174, 56
               

               
Conread position:
               
24-385
               

               
Cow position:
               
chr3:48220520-48220897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
43, 234
               

               
Conread position:
               
29-371
               

               
Cow position:
               
chr3:83269050-83269387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 30
               

               
Conread position:
               
33-389
               

               
Cow position:
               
chr3:1991618-1991991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
12, 141
               

               
Conread position:
               
183-353
               

               
Cow position:
               
chr3:64503279-64503445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
183-418
               

               
Cow position:
               
chr3:5478271-5478039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
111, 91
               

               
Conread position:
               
186-386
               

               
Cow position:
               
chr3:58529526-58529322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 58
               

               
Conread position:
               
203-386
               

               
Cow position:
               
chr3:71284092-71283910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
63, 23
               

               
Conread position:
               
204-387
               

               
Cow position:
               
chr3:70921315-70921140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
109, 41
               

               
Conread position:
               
239-386
               

               
Cow position:
               
chr3:47728398-47728252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chr4:21149615-21149978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 65
               

               
Conread position:
               
2-371
               

               
Cow position:
               
chr4:42713168-42713542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 176
               

               
Conread position:
               
24-361
               

               
Cow position:
               
chr4:37642714-37643058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 99
               

               
Conread position:
               
24-372
               

               
Cow position:
               
chr4:19244701-19244341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 16
               

               
Conread position:
               
30-371
               

               
Cow position:
               
chr4:42677224-42677562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 68
               

               
Conread position:
               
67-371
               

               
Cow position:
               
chr4:45842990-45842675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
8, 40
               

               
Conread position:
               
100-371
               

               
Cow position:
               
chr4:7696964-7696690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
24, 109
               

               
Conread position:
               
102-386
               

               
Cow position:
               
chr4:12663528-12663235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
30, 7
               

               
Conread position:
               
124-397
               

               
Cow position:
               
chr4:52111960-52112242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
8, 79
               

               
Conread position:
               
128-385
               

               
Cow position:
               
chr4:61395-61131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
41, 122
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr4:62125109-62125297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
40, 137
               

               
Conread position:
               
186-371
               

               
Cow position:
               
chr4:43063577-43063392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
230-369
               

               
Cow position:
               
chr4:10052730-10052593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
854-989
               

               
Cow position:
               
chr4:26180177-26180044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr5:7413913-7414279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
65, 108
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr5:35545549-35545164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
19, 106
               

               
Conread position:
               
2-342
               

               
Cow position:
               
chr5:20014027-20014376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
122, 60
               

               
Conread position:
               
2-371
               

               
Cow position:
               
chr5:10885178-10884810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
116, 46
               

               
Conread position:
               
10-386
               

               
Cow position:
               
chr5:35712448-35712049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
22, 254
               

               
Conread position:
               
12-272
               

               
Cow position:
               
chr5:20744327-20744600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
45, 241
               

               
Conread position:
               
20-371
               

               
Cow position:
               
chr5:27409345-27409679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 154
               

               
Conread position:
               
23-378
               

               
Cow position:
               
chr5:4426835-4427187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
108, 53
               

               
Conread position:
               
24-388
               

               
Cow position:
               
chr5:53959156-53958775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 97
               

               
Conread position:
               
30-381
               

               
Cow position:
               
chr5:20658793-20658435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 168
               

               
Conread position:
               
31-185
               

               
Cow position:
               
chr5:49082701-49082546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
93, 87
               

               
Conread position:
               
33-384
               

               
Cow position:
               
chr5:65670913-65670556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 31
               

               
Conread position:
               
33-386
               

               
Cow position:
               
chr5:43147293-43146941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
51-371
               

               
Cow position:
               
chr5:4263284-4262955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
25, 226
               

               
Conread position:
               
70-386
               

               
Cow position:
               
chr5:41514077-41514405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 188
               

               
Conread position:
               
90-386
               

               
Cow position:
               
chr5:57408686-57408994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
122-389
               

               
Cow position:
               
chr5:35642715-35642975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
10, 61
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chr5:64173113-64173303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
183-372
               

               
Cow position:
               
chr5:74674829-74674643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
183-373
               

               
Cow position:
               
chr5:7868133-7868322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr5:44766225-44766430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
136, 52
               

               
Conread position:
               
203-364
               

               
Cow position:
               
chr5:63125835-63125674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
94, 156
               

               
Conread position:
               
226-353
               

               
Cow position:
               
chr5:49088696-49088823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
226-371
               

               
Cow position:
               
chr5:34182232-34182094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
269-386
               

               
Cow position:
               
chr5:55349063-55349178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
277-371
               

               
Cow position:
               
chr5:63581718-63581812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
486-653
               

               
Cow position:
               
chr5:3983944-3983772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
29, 81
               

               
Conread position:
               
747-994
               

               
Cow position:
               
chr5:3983220-3982980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 85
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr6:19410860-19410488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
18, 74
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr6:54628708-54629115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
27, 58
               

               
Conread position:
               
10-386
               

               
Cow position:
               
chr6:29540819-29540418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
10, 101
               

               
Conread position:
               
12-185
               

               
Cow position:
               
chr6:69435898-69436072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
103, 142
               

               
Conread position:
               
12-258
               

               
Cow position:
               
chr6:60758027-60757764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
112, 55
               

               
Conread position:
               
12-386
               

               
Cow position:
               
chr6:3350094-3350481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 132
               

               
Conread position:
               
20-351
               

               
Cow position:
               
chr6:52617241-52616894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
10, 130
               

               
Conread position:
               
23-369
               

               
Cow position:
               
chr6:38945562-38945919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
24-295
               

               
Cow position:
               
chr6:57240150-57239869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 19
               

               
Conread position:
               
40-385
               

               
Cow position:
               
chr6:50469027-50469369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 9
               

               
Conread position:
               
63-386
               

               
Cow position:
               
chr6:31380555-31380865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
76, 43
               

               
Conread position:
               
122-371
               

               
Cow position:
               
chr6:7167646-7167904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
10, 108
               

               
Conread position:
               
127-371
               

               
Cow position:
               
chr6:35232155-35231899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
57, 89
               

               
Conread position:
               
181-371
               

               
Cow position:
               
chr6:63427340-63427155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
100, 43
               

               
Conread position:
               
183-374
               

               
Cow position:
               
chr6:53688608-53688417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr6:53561028-53560823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
49, 60
               

               
Conread position:
               
216-368
               

               
Cow position:
               
chr6:35181874-35182026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
80, 26
               

               
Conread position:
               
230-371
               

               
Cow position:
               
chr6:58963884-58964027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 12
               

               
Conread position:
               
243-372
               

               
Cow position:
               
chr6:61439459-61439588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
846-994
               

               
Cow position:
               
chr6:7963151-7963005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
92, 11
               

               
Conread position:
               
1-342
               

               
Cow position:
               
chr7:17884205-17883870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
183, 45
               

               
Conread position:
               
2-386
               

               
Cow position:
               
chr7:561873-562258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
65, 107
               

               
Conread position:
               
12-184
               

               
Cow position:
               
chr7:23586822-23586647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 51
               

               
Conread position:
               
12-185
               

               
Cow position:
               
chr7:10458087-10458265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
14-384
               

               
Cow position:
               
chr7:23561182-23560812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 48
               

               
Conread position:
               
33-371
               

               
Cow position:
               
chr7:23676957-23677295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 54
               

               
Conread position:
               
41-298
               

               
Cow position:
               
chr7:32889150-32888881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
32, 213
               

               
Conread position:
               
70-386
               

               
Cow position:
               
chr7:22352061-22351727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
54, 87
               

               
Conread position:
               
77-386
               

               
Cow position:
               
chr7:542284-542585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
32, 38
               

               
Conread position:
               
78-306
               

               
Cow position:
               
chr7:516071-515838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
46, 99
               

               
Conread position:
               
87-329
               

               
Cow position:
               
chr7:568436-568188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 59
               

               
Conread position:
               
89-371
               

               
Cow position:
               
chr7:26539984-26539698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
34, 147
               

               
Conread position:
               
114-386
               

               
Cow position:
               
chr7:6019907-6020169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
131-371
               

               
Cow position:
               
chr7:45602787-45602541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
52, 79
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr7:53491069-53491269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
41, 63
               

               
Conread position:
               
189-372
               

               
Cow position:
               
chr7:23586618-23586437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
168, 11
               

               
Conread position:
               
203-371
               

               
Cow position:
               
chr7:23953634-23953466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
215-371
               

               
Cow position:
               
chr7:11144561-11144410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
240-386
               

               
Cow position:
               
chr7:5482832-5482684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
244-386
               

               
Cow position:
               
chr7:10458616-10458759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr8:25510206-25509905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
131, 19
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr8:53343099-53343457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
56, 19
               

               
Conread position:
               
2-314
               

               
Cow position:
               
chr8:51487554-51487865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 41
               

               
Conread position:
               
2-371
               

               
Cow position:
               
chr8:4546109-4546498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 67
               

               
Conread position:
               
13-386
               

               
Cow position:
               
chr8:48188809-48189202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
24-182
               

               
Cow position:
               
chr8:47442806-47442646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
49, 43
               

               
Conread position:
               
24-385
               

               
Cow position:
               
chr8:47542674-47542293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
37, 142
               

               
Conread position:
               
24-404
               

               
Cow position:
               
chr8:761066-761450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
38, 268
               

               
Conread position:
               
25-262
               

               
Cow position:
               
chr8:40887136-40887386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
45, 188
               

               
Conread position:
               
29-371
               

               
Cow position:
               
chr8:53655087-53654747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
95, 60
               

               
Conread position:
               
33-386
               

               
Cow position:
               
chr8:18001412-18001772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
91, 65
               

               
Conread position:
               
72-371
               

               
Cow position:
               
chr8:11647281-11646967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
59, 34
               

               
Conread position:
               
77-385
               

               
Cow position:
               
chr8:39735472-39735792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 78
               

               
Conread position:
               
110-386
               

               
Cow position:
               
chr8:59492704-59492408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
14, 157
               

               
Conread position:
               
183-385
               

               
Cow position:
               
chr8:35557753-35557553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
9, 18
               

               
Conread position:
               
183-389
               

               
Cow position:
               
chr8:58409424-58409219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
184-370
               

               
Cow position:
               
chr8:47442614-47442429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 59
               

               
Conread position:
               
185-386
               

               
Cow position:
               
chr8:27700636-27700432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
36, 58
               

               
Conread position:
               
186-371
               

               
Cow position:
               
chr8:24343893-24344078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
10, 15
               

               
Conread position:
               
226-386
               

               
Cow position:
               
chr8:38476288-38476448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
132, 76
               

               
Conread position:
               
244-407
               

               
Cow position:
               
chr8:3900704-3900536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
258-386
               

               
Cow position:
               
chr8:34798123-34797998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 19
               

               
Conread position:
               
273-386
               

               
Cow position:
               
chr8:36644965-36644851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
289-390
               

               
Cow position:
               
chr8:25509687-25509585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
489-651
               

               
Cow position:
               
chr8:26415117-26414950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr9:10090320-10089953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
126, 38
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr9:31133941-31133577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
68, 19
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr9:47560482-47560111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
20-371
               

               
Cow position:
               
chr9:54675999-54675644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 56
               

               
Conread position:
               
23-386
               

               
Cow position:
               
chr9:20591395-20591758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
42, 89
               

               
Conread position:
               
23-389
               

               
Cow position:
               
chr9:22292048-22292434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 19
               

               
Conread position:
               
30-176
               

               
Cow position:
               
chr9:8857796-8857649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
94, 123
               

               
Conread position:
               
75-396
               

               
Cow position:
               
chr9:48042830-48042512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
45, 20
               

               
Conread position:
               
77-389
               

               
Cow position:
               
chr9:8938537-8938862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
93-367
               

               
Cow position:
               
chr9:22310989-22311269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
185-371
               

               
Cow position:
               
chr9:54669883-54669696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
186-386
               

               
Cow position:
               
chr9:8857609-8857405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
226-394
               

               
Cow position:
               
chr9:9948185-9948354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
132, 16
               

               
Conread position:
               
812-994
               

               
Cow position:
               
chr9:11219703-11219524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
854-994
               

               
Cow position:
               
chr9:34272694-34272551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 64
               

               
Conread position:
               
20-356
               

               
Cow position:
               
chrX:45644985-45644643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
104, 39
               

               
Conread position:
               
33-185
               

               
Cow position:
               
chrX:24577171-24577011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
58-371
               

               
Cow position:
               
chrX:47161551-47161873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
59, 184
               

               
Conread position:
               
163-353
               

               
Cow position:
               
chrX:24576943-24576751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 5
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chrX:7979742-7979934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
183-371
               

               
Cow position:
               
chrX:33956440-33956258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
226-371
               

               
Cow position:
               
chrX:7076364-7076219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
484-737
               

               
Cow position:
               
chrX:688174-687909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
34, 71
               

               
Conread position:
               
854-994
               

               
Cow position:
               
chrX:14228224-14228086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 0