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Cow genome map

           
Conread name:
           
Ss1.1-Pig3-SRG8015P11.5
        

               
Conread position:
               
78-217
               

               
Cow position:
               
chr1:32965039-32964899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
78-220
               

               
Cow position:
               
chr1:55117921-55117778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
79-226
               

               
Cow position:
               
chr1:48321429-48321575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
61, 21
               

               
Conread position:
               
81-219
               

               
Cow position:
               
chr1:98412861-98412999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
39, 133
               

               
Conread position:
               
81-220
               

               
Cow position:
               
chr1:638368-638221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
81-221
               

               
Cow position:
               
chr1:75185104-75184963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
81-226
               

               
Cow position:
               
chr1:89776678-89776822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
86-218
               

               
Cow position:
               
chr1:5655272-5655404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
30, 121
               

               
Conread position:
               
89-219
               

               
Cow position:
               
chr1:77942709-77942839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
26, 59
               

               
Conread position:
               
92-519
               

               
Cow position:
               
chr1:81642045-81642468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 58
               

               
Conread position:
               
115-225
               

               
Cow position:
               
chr1:29107368-29107478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
128-218
               

               
Cow position:
               
chr1:16523671-16523581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
91
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
229-528
               

               
Cow position:
               
chr1:69722370-69722075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
51, 77
               

               
Conread position:
               
259-528
               

               
Cow position:
               
chr1:48321640-48321897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
119, 22
               

               
Conread position:
               
276-528
               

               
Cow position:
               
chr1:5634176-5633926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
62, 5
               

               
Conread position:
               
276-528
               

               
Cow position:
               
chr1:90402888-90403140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
105, 5
               

               
Conread position:
               
289-528
               

               
Cow position:
               
chr1:78026998-78027239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
92, 134
               

               
Conread position:
               
324-528
               

               
Cow position:
               
chr1:22590093-22589886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
17, 101
               

               
Conread position:
               
326-523
               

               
Cow position:
               
chr1:11381908-11382096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
326-525
               

               
Cow position:
               
chr1:75184836-75184642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
53, 97
               

               
Conread position:
               
326-528
               

               
Cow position:
               
chr1:5664894-5665096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
53, 39
               

               
Conread position:
               
326-528
               

               
Cow position:
               
chr1:97770445-97770246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
51, 92
               

               
Conread position:
               
326-528
               

               
Cow position:
               
chr1:101441753-101441956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
53, 97
               

               
Conread position:
               
327-527
               

               
Cow position:
               
chr1:29107649-29107854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
33, 97
               

               
Conread position:
               
330-528
               

               
Cow position:
               
chr1:101625350-101625151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
52, 93
               

               
Conread position:
               
336-527
               

               
Cow position:
               
chr1:55121030-55121214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 61
               

               
Conread position:
               
337-528
               

               
Cow position:
               
chr1:80314702-80314511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
126, 85
               

               
Conread position:
               
340-528
               

               
Cow position:
               
chr1:86302145-86302328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
43, 14
               

               
Conread position:
               
341-528
               

               
Cow position:
               
chr1:57810003-57809814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
44, 84
               

               
Conread position:
               
348-517
               

               
Cow position:
               
chr1:31977946-31977776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
22, 67
               

               
Conread position:
               
349-528
               

               
Cow position:
               
chr1:60311306-60311487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
29, 76
               

               
Conread position:
               
362-528
               

               
Cow position:
               
chr1:27958719-27958886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 60
               

               
Conread position:
               
364-520
               

               
Cow position:
               
chr1:10935013-10935171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
23, 59
               

               
Conread position:
               
370-519
               

               
Cow position:
               
chr1:47366931-47367080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
91, 51
               

               
Conread position:
               
384-526
               

               
Cow position:
               
chr1:55124749-55124885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
384-528
               

               
Cow position:
               
chr1:228868-228723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
75, 37
               

               
Conread position:
               
389-520
               

               
Cow position:
               
chr1:16522507-16522375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
72, 27
               

               
Conread position:
               
392-528
               

               
Cow position:
               
chr1:81112809-81112944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
399-527
               

               
Cow position:
               
chr1:32496036-32495910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
399-528
               

               
Cow position:
               
chr1:91025891-91025766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
400-528
               

               
Cow position:
               
chr1:47365077-47364953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
401-528
               

               
Cow position:
               
chr1:35434324-35434199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
402-528
               

               
Cow position:
               
chr1:7486804-7486679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 18
               

               
Conread position:
               
407-528
               

               
Cow position:
               
chr1:97469423-97469303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
63, 14
               

               
Conread position:
               
79-218
               

               
Cow position:
               
chr10:42349142-42349280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
80-220
               

               
Cow position:
               
chr10:68375301-68375437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
37, 111
               

               
Conread position:
               
81-186
               

               
Cow position:
               
chr10:25926936-25926830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
81-219
               

               
Cow position:
               
chr10:1036434-1036571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
27, 102
               

               
Conread position:
               
81-220
               

               
Cow position:
               
chr10:52450146-52450007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 125
               

               
Conread position:
               
81-528
               

               
Cow position:
               
chr10:65366800-65367252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 131
               

               
Conread position:
               
89-220
               

               
Cow position:
               
chr10:838348-838217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 83
               

               
Conread position:
               
89-528
               

               
Cow position:
               
chr10:62892310-62892729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 86
               

               
Conread position:
               
92-226
               

               
Cow position:
               
chr10:27306157-27306022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
233-528
               

               
Cow position:
               
chr10:20529091-20529364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 12
               

               
Conread position:
               
248-528
               

               
Cow position:
               
chr10:33814245-33814516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
44, 11
               

               
Conread position:
               
259-496
               

               
Cow position:
               
chr10:838095-837865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
16, 47
               

               
Conread position:
               
259-528
               

               
Cow position:
               
chr10:23859837-23859572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
326-528
               

               
Cow position:
               
chr10:7731127-7731322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 90
               

               
Conread position:
               
326-528
               

               
Cow position:
               
chr10:63684735-63684523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
53, 97
               

               
Conread position:
               
329-528
               

               
Cow position:
               
chr10:68375660-68375857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
57, 25
               

               
Conread position:
               
369-528
               

               
Cow position:
               
chr10:65781950-65782107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
87, 6
               

               
Conread position:
               
400-528
               

               
Cow position:
               
chr10:33720475-33720349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
407-528
               

               
Cow position:
               
chr10:42349732-42349855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
49, 14
               

               
Conread position:
               
78-219
               

               
Cow position:
               
chr11:37329953-37330095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
79-219
               

               
Cow position:
               
chr11:39234586-39234728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
81-221
               

               
Cow position:
               
chr11:881673-881532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
81-501
               

               
Cow position:
               
chr11:63678224-63678662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 109
               

               
Conread position:
               
84-220
               

               
Cow position:
               
chr11:37356367-37356229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
87-317
               

               
Cow position:
               
chr11:42057971-42058214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
89-220
               

               
Cow position:
               
chr11:9806582-9806449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
92-192
               

               
Cow position:
               
chr11:5252511-5252410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
92-220
               

               
Cow position:
               
chr11:5144523-5144395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
26, 122
               

               
Conread position:
               
92-225
               

               
Cow position:
               
chr11:41483421-41483287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 98
               

               
Conread position:
               
92-226
               

               
Cow position:
               
chr11:36901494-36901362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
25, 14
               

               
Conread position:
               
92-227
               

               
Cow position:
               
chr11:19703197-19703332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
23, 55
               

               
Conread position:
               
96-291
               

               
Cow position:
               
chr11:16283287-16283479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 103
               

               
Conread position:
               
104-235
               

               
Cow position:
               
chr11:72347161-72347029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
106-220
               

               
Cow position:
               
chr11:6604792-6604906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
18, 108
               

               
Conread position:
               
119-226
               

               
Cow position:
               
chr11:32390979-32391085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
128-528
               

               
Cow position:
               
chr11:4665067-4664688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 66
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chr11:9804831-9804588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
204, 62
               

               
Conread position:
               
276-528
               

               
Cow position:
               
chr11:45491536-45491296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
183, 6
               

               
Conread position:
               
276-528
               

               
Cow position:
               
chr11:70245464-70245718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
58, 5
               

               
Conread position:
               
279-528
               

               
Cow position:
               
chr11:37356115-37355872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 52
               

               
Conread position:
               
281-528
               

               
Cow position:
               
chr11:66673745-66673496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
56, 187
               

               
Conread position:
               
296-528
               

               
Cow position:
               
chr11:16285186-16285433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
40, 140
               

               
Conread position:
               
304-512
               

               
Cow position:
               
chr11:39243625-39243837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
6, 120
               

               
Conread position:
               
310-527
               

               
Cow position:
               
chr11:37729331-37729545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
68, 7
               

               
Conread position:
               
317-520
               

               
Cow position:
               
chr11:40011978-40011780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
66, 7
               

               
Conread position:
               
326-528
               

               
Cow position:
               
chr11:39241528-39241731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
53, 28
               

               
Conread position:
               
327-528
               

               
Cow position:
               
chr11:37398831-37398628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
51, 97
               

               
Conread position:
               
384-528
               

               
Cow position:
               
chr11:42058243-42058385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
100, 37
               

               
Conread position:
               
407-526
               

               
Cow position:
               
chr11:75202727-75202842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
417-526
               

               
Cow position:
               
chr11:39204851-39204959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
417-528
               

               
Cow position:
               
chr11:36443882-36443994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
420-527
               

               
Cow position:
               
chr11:7548796-7548690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
81-220
               

               
Cow position:
               
chr12:9382079-9381939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
81-223
               

               
Cow position:
               
chr12:8978735-8978592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
81-231
               

               
Cow position:
               
chr12:3016193-3016343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
38, 75
               

               
Conread position:
               
81-233
               

               
Cow position:
               
chr12:39571968-39571812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
92-220
               

               
Cow position:
               
chr12:9955978-9956107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
25, 117
               

               
Conread position:
               
92-227
               

               
Cow position:
               
chr12:2911142-2911279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
25, 89
               

               
Conread position:
               
96-229
               

               
Cow position:
               
chr12:4541368-4541502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
106-226
               

               
Cow position:
               
chr12:43016034-43016157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
254-528
               

               
Cow position:
               
chr12:3016631-3016899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 61
               

               
Conread position:
               
259-514
               

               
Cow position:
               
chr12:4541580-4541826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
51, 21
               

               
Conread position:
               
269-528
               

               
Cow position:
               
chr12:9381780-9381533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
109, 61
               

               
Conread position:
               
309-463
               

               
Cow position:
               
chr12:39568090-39567936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
70, 53
               

               
Conread position:
               
326-523
               

               
Cow position:
               
chr12:8978444-8978253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
53, 71
               

               
Conread position:
               
339-528
               

               
Cow position:
               
chr12:9000476-9000665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
39, 84
               

               
Conread position:
               
362-528
               

               
Cow position:
               
chr12:21241808-21241644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
17, 61
               

               
Conread position:
               
77-227
               

               
Cow position:
               
chr13:52288820-52288669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
109, 45
               

               
Conread position:
               
80-213
               

               
Cow position:
               
chr13:17968408-17968542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
7, 119
               

               
Conread position:
               
92-225
               

               
Cow position:
               
chr13:19282300-19282163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
259-526
               

               
Cow position:
               
chr13:10959282-10959533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
120, 21
               

               
Conread position:
               
292-522
               

               
Cow position:
               
chr13:54520919-54520692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
90, 35
               

               
Conread position:
               
370-519
               

               
Cow position:
               
chr13:18884556-18884407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
89, 55
               

               
Conread position:
               
417-528
               

               
Cow position:
               
chr13:33157184-33157295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
39, 49
               

               
Conread position:
               
66-220
               

               
Cow position:
               
chr14:24207591-24207438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 18
               

               
Conread position:
               
66-226
               

               
Cow position:
               
chr14:5363459-5363300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
51, 21
               

               
Conread position:
               
77-226
               

               
Cow position:
               
chr14:34207898-34208046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
46, 8
               

               
Conread position:
               
79-220
               

               
Cow position:
               
chr14:20890880-20891022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
81-220
               

               
Cow position:
               
chr14:8807859-8807718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
86-511
               

               
Cow position:
               
chr14:35408243-35408670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
31, 109
               

               
Conread position:
               
89-225
               

               
Cow position:
               
chr14:10487795-10487661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
16, 105
               

               
Conread position:
               
95-220
               

               
Cow position:
               
chr14:9228520-9228646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
324-528
               

               
Cow position:
               
chr14:8196299-8196097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
55, 12
               

               
Conread position:
               
326-528
               

               
Cow position:
               
chr14:3701117-3700914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
47, 83
               

               
Conread position:
               
336-528
               

               
Cow position:
               
chr14:39652506-39652691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
47, 72
               

               
Conread position:
               
362-527
               

               
Cow position:
               
chr14:50587938-50587775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
84-179
               

               
Cow position:
               
chr15:18788478-18788381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
95-231
               

               
Cow position:
               
chr15:1998914-1998779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
275-528
               

               
Cow position:
               
chr15:38890503-38890266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
100, 6
               

               
Conread position:
               
284-514
               

               
Cow position:
               
chr15:3229030-3228808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
99, 46
               

               
Conread position:
               
326-528
               

               
Cow position:
               
chr15:424595-424393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
54, 97
               

               
Conread position:
               
362-528
               

               
Cow position:
               
chr15:1997565-1997398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 55
               

               
Conread position:
               
379-528
               

               
Cow position:
               
chr15:18787988-18787834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
59, 42
               

               
Conread position:
               
81-192
               

               
Cow position:
               
chr16:54409246-54409357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
38, 78
               

               
Conread position:
               
81-243
               

               
Cow position:
               
chr16:200293-200457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
81-528
               

               
Cow position:
               
chr16:20984834-20985287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 169
               

               
Conread position:
               
86-212
               

               
Cow position:
               
chr16:34131577-34131450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
89-220
               

               
Cow position:
               
chr16:23384398-23384532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 120
               

               
Conread position:
               
92-220
               

               
Cow position:
               
chr16:8786864-8786736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
23, 94
               

               
Conread position:
               
92-226
               

               
Cow position:
               
chr16:33709607-33709739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 81
               

               
Conread position:
               
92-234
               

               
Cow position:
               
chr16:27974774-27974627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
95-226
               

               
Cow position:
               
chr16:26065509-26065642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
22, 102
               

               
Conread position:
               
96-220
               

               
Cow position:
               
chr16:33147635-33147759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
21, 118
               

               
Conread position:
               
222-523
               

               
Cow position:
               
chr16:15098985-15098693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
157, 20
               

               
Conread position:
               
229-528
               

               
Cow position:
               
chr16:7179828-7179545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
11, 59
               

               
Conread position:
               
231-528
               

               
Cow position:
               
chr16:46543892-46543613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
130, 61
               

               
Conread position:
               
234-419
               

               
Cow position:
               
chr16:26185233-26185050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
143, 76
               

               
Conread position:
               
242-526
               

               
Cow position:
               
chr16:30563695-30563956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
136, 40
               

               
Conread position:
               
242-528
               

               
Cow position:
               
chr16:31703932-31704193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
136, 40
               

               
Conread position:
               
242-528
               

               
Cow position:
               
chr16:49778690-49778421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
137, 77
               

               
Conread position:
               
245-528
               

               
Cow position:
               
chr16:54409601-54409875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 14
               

               
Conread position:
               
245-528
               

               
Cow position:
               
chr16:54632369-54632627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
136, 83
               

               
Conread position:
               
245-528
               

               
Cow position:
               
chr16:54635221-54635479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
136, 83
               

               
Conread position:
               
259-519
               

               
Cow position:
               
chr16:2711003-2711253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
120, 21
               

               
Conread position:
               
259-528
               

               
Cow position:
               
chr16:3892130-3892396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
120, 21
               

               
Conread position:
               
259-528
               

               
Cow position:
               
chr16:33147849-33148111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
276-526
               

               
Cow position:
               
chr16:45781178-45781426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
58, 8
               

               
Conread position:
               
296-516
               

               
Cow position:
               
chr16:23384846-23385062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
165, 25
               

               
Conread position:
               
332-528
               

               
Cow position:
               
chr16:32165486-32165683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
51, 90
               

               
Conread position:
               
337-528
               

               
Cow position:
               
chr16:12044619-12044433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
46, 20
               

               
Conread position:
               
341-517
               

               
Cow position:
               
chr16:44523022-44523197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
38, 82
               

               
Conread position:
               
399-528
               

               
Cow position:
               
chr16:10444565-10444690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
424-526
               

               
Cow position:
               
chr16:26184841-26184737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 68
               

               
Conread position:
               
70-226
               

               
Cow position:
               
chr17:25546066-25546224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
81-221
               

               
Cow position:
               
chr17:38189756-38189896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
36, 30
               

               
Conread position:
               
81-527
               

               
Cow position:
               
chr17:1325394-1324975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 132
               

               
Conread position:
               
86-220
               

               
Cow position:
               
chr17:15483599-15483734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
88-218
               

               
Cow position:
               
chr17:891545-891675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
27, 58
               

               
Conread position:
               
92-220
               

               
Cow position:
               
chr17:1491414-1491286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
31, 114
               

               
Conread position:
               
92-220
               

               
Cow position:
               
chr17:21461268-21461142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
37, 103
               

               
Conread position:
               
92-220
               

               
Cow position:
               
chr17:24997215-24997344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
92-221
               

               
Cow position:
               
chr17:11072421-11072293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 96
               

               
Conread position:
               
92-224
               

               
Cow position:
               
chr17:27302197-27302330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
92-225
               

               
Cow position:
               
chr17:1730389-1730255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
92-225
               

               
Cow position:
               
chr17:1756788-1756922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
115-220
               

               
Cow position:
               
chr17:25147977-25148082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
231-528
               

               
Cow position:
               
chr17:30292200-30292467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
362-517
               

               
Cow position:
               
chr17:11292027-11292183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 60
               

               
Conread position:
               
376-528
               

               
Cow position:
               
chr17:4878939-4878789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
60, 24
               

               
Conread position:
               
399-526
               

               
Cow position:
               
chr17:29040171-29040046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
399-527
               

               
Cow position:
               
chr17:43261673-43261799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
399-528
               

               
Cow position:
               
chr17:1757119-1757244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
86, 22
               

               
Conread position:
               
399-528
               

               
Cow position:
               
chr17:25546431-25546554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
80-220
               

               
Cow position:
               
chr18:29105544-29105683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
37, 10
               

               
Conread position:
               
86-220
               

               
Cow position:
               
chr18:16351443-16351309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
31, 98
               

               
Conread position:
               
86-220
               

               
Cow position:
               
chr18:42985998-42986134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
92-226
               

               
Cow position:
               
chr18:4940301-4940434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
25, 90
               

               
Conread position:
               
166-528
               

               
Cow position:
               
chr18:11647858-11648217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
145, 13
               

               
Conread position:
               
259-526
               

               
Cow position:
               
chr18:29105763-29106026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
121, 21
               

               
Conread position:
               
259-528
               

               
Cow position:
               
chr18:2999331-2999074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
119, 21
               

               
Conread position:
               
276-527
               

               
Cow position:
               
chr18:16502752-16502995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
100, 5
               

               
Conread position:
               
281-528
               

               
Cow position:
               
chr18:42986257-42986501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 57
               

               
Conread position:
               
326-527
               

               
Cow position:
               
chr18:41912349-41912147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
17, 98
               

               
Conread position:
               
336-528
               

               
Cow position:
               
chr18:4935170-4935369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
50, 87
               

               
Conread position:
               
336-528
               

               
Cow position:
               
chr18:16355593-16355785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
46, 19
               

               
Conread position:
               
392-528
               

               
Cow position:
               
chr18:14730219-14730350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
399-519
               

               
Cow position:
               
chr18:38904949-38905069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 38
               

               
Conread position:
               
408-519
               

               
Cow position:
               
chr18:17015620-17015730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
81-220
               

               
Cow position:
               
chr19:10551909-10552049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
81-224
               

               
Cow position:
               
chr19:1065267-1065123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
92-517
               

               
Cow position:
               
chr19:21266807-21266384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
25, 9
               

               
Conread position:
               
275-528
               

               
Cow position:
               
chr19:25098356-25098602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
59, 6
               

               
Conread position:
               
275-528
               

               
Cow position:
               
chr19:43677242-43677487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
107, 53
               

               
Conread position:
               
276-528
               

               
Cow position:
               
chr19:33165629-33165876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
106, 47
               

               
Conread position:
               
292-528
               

               
Cow position:
               
chr19:10552339-10552568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
76, 36
               

               
Conread position:
               
321-528
               

               
Cow position:
               
chr19:20547225-20547026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
128, 49
               

               
Conread position:
               
326-527
               

               
Cow position:
               
chr19:24937853-24937655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
53, 33
               

               
Conread position:
               
342-523
               

               
Cow position:
               
chr19:15006759-15006580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
37, 71
               

               
Conread position:
               
392-528
               

               
Cow position:
               
chr19:40294118-40293983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
101, 29
               

               
Conread position:
               
417-528
               

               
Cow position:
               
chr19:33743601-33743491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
78-220
               

               
Cow position:
               
chr2:38872067-38871926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
39, 128
               

               
Conread position:
               
79-226
               

               
Cow position:
               
chr2:12146408-12146262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 93
               

               
Conread position:
               
79-234
               

               
Cow position:
               
chr2:45773436-45773282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
55, 79
               

               
Conread position:
               
81-219
               

               
Cow position:
               
chr2:43551381-43551239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
81-219
               

               
Cow position:
               
chr2:44556526-44556669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
81-224
               

               
Cow position:
               
chr2:50138283-50138427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
86-220
               

               
Cow position:
               
chr2:34328733-34328869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
92-218
               

               
Cow position:
               
chr2:74692948-74693074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
25, 93
               

               
Conread position:
               
92-220
               

               
Cow position:
               
chr2:46008440-46008567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
25, 65
               

               
Conread position:
               
92-221
               

               
Cow position:
               
chr2:46939292-46939165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
25, 67
               

               
Conread position:
               
92-227
               

               
Cow position:
               
chr2:46025567-46025435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
25, 42
               

               
Conread position:
               
92-248
               

               
Cow position:
               
chr2:46408694-46408850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 43
               

               
Conread position:
               
95-219
               

               
Cow position:
               
chr2:37076365-37076490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
128-220
               

               
Cow position:
               
chr2:45284306-45284214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
93
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
128-224
               

               
Cow position:
               
chr2:46215535-46215631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
229-528
               

               
Cow position:
               
chr2:44622413-44622703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 101
               

               
Conread position:
               
234-528
               

               
Cow position:
               
chr2:45773245-45772958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
44, 72
               

               
Conread position:
               
259-517
               

               
Cow position:
               
chr2:43551142-43550892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
25, 46
               

               
Conread position:
               
259-528
               

               
Cow position:
               
chr2:12146182-12145922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
122, 21
               

               
Conread position:
               
276-528
               

               
Cow position:
               
chr2:34909024-34909264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
107, 5
               

               
Conread position:
               
278-523
               

               
Cow position:
               
chr2:43009931-43010179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
47, 52
               

               
Conread position:
               
279-462
               

               
Cow position:
               
chr2:45284082-45283905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
103, 49
               

               
Conread position:
               
293-512
               

               
Cow position:
               
chr2:63685975-63686185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
93, 39
               

               
Conread position:
               
301-527
               

               
Cow position:
               
chr2:46516890-46516660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
21, 120
               

               
Conread position:
               
309-519
               

               
Cow position:
               
chr2:50140284-50140496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 48
               

               
Conread position:
               
326-528
               

               
Cow position:
               
chr2:64175698-64175905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 99
               

               
Conread position:
               
343-528
               

               
Cow position:
               
chr2:70153608-70153793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
40, 79
               

               
Conread position:
               
348-519
               

               
Cow position:
               
chr2:38874363-38874193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
33, 11
               

               
Conread position:
               
362-523
               

               
Cow position:
               
chr2:36551722-36551563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
15, 60
               

               
Conread position:
               
398-528
               

               
Cow position:
               
chr2:63043803-63043933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
63, 23
               

               
Conread position:
               
399-528
               

               
Cow position:
               
chr2:46008761-46008888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
408-528
               

               
Cow position:
               
chr2:45770059-45769939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
53, 13
               

               
Conread position:
               
81-179
               

               
Cow position:
               
chr20:38659054-38659153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
81-218
               

               
Cow position:
               
chr20:35652435-35652298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 30
               

               
Conread position:
               
89-220
               

               
Cow position:
               
chr20:36174543-36174675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
92-216
               

               
Cow position:
               
chr20:23761061-23760936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
95-418
               

               
Cow position:
               
chr20:37067419-37067747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
22, 172
               

               
Conread position:
               
229-528
               

               
Cow position:
               
chr20:35651622-35651348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
232, 67
               

               
Conread position:
               
259-512
               

               
Cow position:
               
chr20:38558567-38558819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
120, 21
               

               
Conread position:
               
276-528
               

               
Cow position:
               
chr20:14892082-14891836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
102, 5
               

               
Conread position:
               
278-523
               

               
Cow position:
               
chr20:36175013-36175254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
100, 48
               

               
Conread position:
               
298-526
               

               
Cow position:
               
chr20:23760827-23760606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
83, 28
               

               
Conread position:
               
326-527
               

               
Cow position:
               
chr20:32911274-32911473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
331-528
               

               
Cow position:
               
chr20:38659151-38659343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
50, 74
               

               
Conread position:
               
356-528
               

               
Cow position:
               
chr20:20116684-20116510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 112
               

               
Conread position:
               
370-528
               

               
Cow position:
               
chr20:13360876-13361035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 52
               

               
Conread position:
               
384-528
               

               
Cow position:
               
chr20:13754912-13755055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
81-191
               

               
Cow position:
               
chr21:42169567-42169456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
81-220
               

               
Cow position:
               
chr21:1184620-1184760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
8, 124
               

               
Conread position:
               
81-221
               

               
Cow position:
               
chr21:41532560-41532419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
83-220
               

               
Cow position:
               
chr21:12898775-12898638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 131
               

               
Conread position:
               
88-226
               

               
Cow position:
               
chr21:6326523-6326661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 52
               

               
Conread position:
               
90-217
               

               
Cow position:
               
chr21:29200746-29200619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 113
               

               
Conread position:
               
92-226
               

               
Cow position:
               
chr21:42475115-42475248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
33, 46
               

               
Conread position:
               
95-226
               

               
Cow position:
               
chr21:8851235-8851102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
101-216
               

               
Cow position:
               
chr21:7747723-7747608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
16, 69
               

               
Conread position:
               
229-524
               

               
Cow position:
               
chr21:45816340-45816615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
149, 13
               

               
Conread position:
               
230-526
               

               
Cow position:
               
chr21:12898590-12898306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 12
               

               
Conread position:
               
259-528
               

               
Cow position:
               
chr21:43626802-43627062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
120, 28
               

               
Conread position:
               
276-523
               

               
Cow position:
               
chr21:22389017-22389260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
101, 5
               

               
Conread position:
               
276-528
               

               
Cow position:
               
chr21:46804076-46803839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
107, 5
               

               
Conread position:
               
309-526
               

               
Cow position:
               
chr21:7747492-7747268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
70, 12
               

               
Conread position:
               
329-527
               

               
Cow position:
               
chr21:24207444-24207253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
54, 95
               

               
Conread position:
               
337-528
               

               
Cow position:
               
chr21:1188300-1188493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
43, 67
               

               
Conread position:
               
354-520
               

               
Cow position:
               
chr21:20139928-20139760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
25, 69
               

               
Conread position:
               
392-528
               

               
Cow position:
               
chr21:7074371-7074502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
398-524
               

               
Cow position:
               
chr21:24428926-24428802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
42, 23
               

               
Conread position:
               
399-523
               

               
Cow position:
               
chr21:17934029-17934152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 22
               

               
Conread position:
               
399-528
               

               
Cow position:
               
chr21:24735586-24735711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
417-528
               

               
Cow position:
               
chr21:41569839-41569950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
46, 103
               

               
Conread position:
               
81-220
               

               
Cow position:
               
chr22:3070368-3070229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
81-224
               

               
Cow position:
               
chr22:5455141-5455285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
92-220
               

               
Cow position:
               
chr22:31917582-31917456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
25, 81
               

               
Conread position:
               
96-218
               

               
Cow position:
               
chr22:1494846-1494972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
159-327
               

               
Cow position:
               
chr22:8579519-8579688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
229-527
               

               
Cow position:
               
chr22:48302113-48302401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
148, 13
               

               
Conread position:
               
259-528
               

               
Cow position:
               
chr22:26858933-26859195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 24
               

               
Conread position:
               
275-528
               

               
Cow position:
               
chr22:37091088-37090848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
172, 6
               

               
Conread position:
               
321-528
               

               
Cow position:
               
chr22:29050202-29050397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
58, 33
               

               
Conread position:
               
329-528
               

               
Cow position:
               
chr22:18190996-18191191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
15, 85
               

               
Conread position:
               
331-528
               

               
Cow position:
               
chr22:4338752-4338949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
48, 14
               

               
Conread position:
               
336-528
               

               
Cow position:
               
chr22:3069914-3069725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
47, 86
               

               
Conread position:
               
354-527
               

               
Cow position:
               
chr22:5456079-5456251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
362-526
               

               
Cow position:
               
chr22:44517496-44517330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
20, 62
               

               
Conread position:
               
384-528
               

               
Cow position:
               
chr22:3469303-3469164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
395-528
               

               
Cow position:
               
chr22:3246755-3246623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
5, 27
               

               
Conread position:
               
1-84
               

               
Cow position:
               
chr23:3527850-3527767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
86
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
66-226
               

               
Cow position:
               
chr23:13562307-13562466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
51, 18
               

               
Conread position:
               
78-226
               

               
Cow position:
               
chr23:5424866-5424721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
81-528
               

               
Cow position:
               
chr23:3521914-3521467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
90-226
               

               
Cow position:
               
chr23:3552379-3552516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
92-226
               

               
Cow position:
               
chr23:1164906-1165040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 50
               

               
Conread position:
               
92-234
               

               
Cow position:
               
chr23:37098886-37098742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
25, 114
               

               
Conread position:
               
92-238
               

               
Cow position:
               
chr23:4506752-4506604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
95-220
               

               
Cow position:
               
chr23:3531823-3531699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 61
               

               
Conread position:
               
234-522
               

               
Cow position:
               
chr23:1624198-1624474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 88
               

               
Conread position:
               
328-528
               

               
Cow position:
               
chr23:3529801-3529602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
51, 31
               

               
Conread position:
               
392-528
               

               
Cow position:
               
chr23:4785531-4785398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
84-219
               

               
Cow position:
               
chr24:8398899-8399033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 17
               

               
Conread position:
               
92-226
               

               
Cow position:
               
chr24:2454466-2454597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
96, 20
               

               
Conread position:
               
242-523
               

               
Cow position:
               
chr24:24570944-24570685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
135, 87
               

               
Conread position:
               
259-526
               

               
Cow position:
               
chr24:40561125-40561381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
124, 15
               

               
Conread position:
               
294-527
               

               
Cow position:
               
chr24:35788839-35789063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
89, 32
               

               
Conread position:
               
362-527
               

               
Cow position:
               
chr24:18902519-18902365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
387-528
               

               
Cow position:
               
chr24:16886147-16886289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
8, 35
               

               
Conread position:
               
401-528
               

               
Cow position:
               
chr24:10568661-10568785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
417-528
               

               
Cow position:
               
chr24:39510749-39510638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
22, 15
               

               
Conread position:
               
78-226
               

               
Cow position:
               
chr25:36035374-36035224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
89-220
               

               
Cow position:
               
chr25:26243579-26243710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 89
               

               
Conread position:
               
92-209
               

               
Cow position:
               
chr25:6131097-6130979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
92-220
               

               
Cow position:
               
chr25:16155269-16155139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
92-220
               

               
Cow position:
               
chr25:22569657-22569528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
92-225
               

               
Cow position:
               
chr25:8544159-8544026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 8
               

               
Conread position:
               
92-226
               

               
Cow position:
               
chr25:8997-9138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
95-209
               

               
Cow position:
               
chr25:36075783-36075896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
95-220
               

               
Cow position:
               
chr25:21956175-21956301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
106-212
               

               
Cow position:
               
chr25:20505393-20505500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
12, 71
               

               
Conread position:
               
115-220
               

               
Cow position:
               
chr25:6066954-6067058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
229-419
               

               
Cow position:
               
chr25:16155088-16154916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
11, 101
               

               
Conread position:
               
229-517
               

               
Cow position:
               
chr25:31794488-31794767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
153, 58
               

               
Conread position:
               
245-527
               

               
Cow position:
               
chr25:26243774-26244038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 84
               

               
Conread position:
               
245-528
               

               
Cow position:
               
chr25:21956363-21956627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
276-524
               

               
Cow position:
               
chr25:8532551-8532788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
101, 5
               

               
Conread position:
               
399-528
               

               
Cow position:
               
chr25:8543837-8543710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
81-221
               

               
Cow position:
               
chr26:30871716-30871857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
84-526
               

               
Cow position:
               
chr26:16049800-16049346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
32, 122
               

               
Conread position:
               
85-217
               

               
Cow position:
               
chr26:19381814-19381681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
92-226
               

               
Cow position:
               
chr26:20868105-20868240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
229-403
               

               
Cow position:
               
chr26:19381637-19381478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
330-528
               

               
Cow position:
               
chr26:30872174-30872374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
6, 133
               

               
Conread position:
               
338-528
               

               
Cow position:
               
chr26:16754606-16754796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
41, 85
               

               
Conread position:
               
343-528
               

               
Cow position:
               
chr26:16050096-16049911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
40, 79
               

               
Conread position:
               
399-528
               

               
Cow position:
               
chr26:12271112-12270985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
80-226
               

               
Cow position:
               
chr27:26470195-26470340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
37, 120
               

               
Conread position:
               
81-220
               

               
Cow position:
               
chr27:3794504-3794642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
39, 86
               

               
Conread position:
               
90-226
               

               
Cow position:
               
chr27:15106059-15106194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
92-227
               

               
Cow position:
               
chr27:27714970-27714833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
96-227
               

               
Cow position:
               
chr27:24717938-24717806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
128-224
               

               
Cow position:
               
chr27:23031007-23030913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
229-528
               

               
Cow position:
               
chr27:3796738-3797025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 22
               

               
Conread position:
               
259-518
               

               
Cow position:
               
chr27:8709175-8709425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
122, 47
               

               
Conread position:
               
347-528
               

               
Cow position:
               
chr27:29661564-29661381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
21, 63
               

               
Conread position:
               
373-528
               

               
Cow position:
               
chr27:12677866-12678019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
83, 34
               

               
Conread position:
               
392-528
               

               
Cow position:
               
chr27:4498731-4498865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
81-219
               

               
Cow position:
               
chr28:34761471-34761332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
84-217
               

               
Cow position:
               
chr28:9792884-9792749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
92-227
               

               
Cow position:
               
chr28:18714482-18714347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
26, 44
               

               
Conread position:
               
95-438
               

               
Cow position:
               
chr28:5414767-5414414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 191
               

               
Conread position:
               
96-229
               

               
Cow position:
               
chr28:87370-87503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 108
               

               
Conread position:
               
276-527
               

               
Cow position:
               
chr28:93194-92945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
107, 5
               

               
Conread position:
               
304-518
               

               
Cow position:
               
chr28:9792618-9792402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 18
               

               
Conread position:
               
324-528
               

               
Cow position:
               
chr28:10695751-10695948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
47, 23
               

               
Conread position:
               
326-520
               

               
Cow position:
               
chr28:34761177-34760976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
54, 103
               

               
Conread position:
               
400-517
               

               
Cow position:
               
chr28:11312137-11312022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
408-528
               

               
Cow position:
               
chr28:28069438-28069318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 13
               

               
Conread position:
               
86-220
               

               
Cow position:
               
chr29:27058520-27058655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
92-217
               

               
Cow position:
               
chr29:1627713-1627587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
229-326
               

               
Cow position:
               
chr29:38865251-38865155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
14, 76
               

               
Conread position:
               
229-526
               

               
Cow position:
               
chr29:16342835-16343131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 94
               

               
Conread position:
               
276-528
               

               
Cow position:
               
chr29:2057526-2057779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
59, 83
               

               
Conread position:
               
326-528
               

               
Cow position:
               
chr29:33556611-33556416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
73, 41
               

               
Conread position:
               
407-528
               

               
Cow position:
               
chr29:26737468-26737349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
408-528
               

               
Cow position:
               
chr29:32760671-32760551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
48, 13
               

               
Conread position:
               
79-214
               

               
Cow position:
               
chr3:7837645-7837511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 63
               

               
Conread position:
               
80-220
               

               
Cow position:
               
chr3:19236324-19236470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
7, 16
               

               
Conread position:
               
81-220
               

               
Cow position:
               
chr3:52026749-52026609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
12, 126
               

               
Conread position:
               
81-528
               

               
Cow position:
               
chr3:4127023-4126590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 113
               

               
Conread position:
               
90-411
               

               
Cow position:
               
chr3:22702922-22703230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
27, 109
               

               
Conread position:
               
95-220
               

               
Cow position:
               
chr3:37256162-37256036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
97-234
               

               
Cow position:
               
chr3:22699595-22699730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
101-528
               

               
Cow position:
               
chr3:36543914-36543480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 127
               

               
Conread position:
               
112-226
               

               
Cow position:
               
chr3:58594549-58594662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
242-528
               

               
Cow position:
               
chr3:26586171-26585908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
138, 87
               

               
Conread position:
               
242-528
               

               
Cow position:
               
chr3:46214899-46214627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
210, 77
               

               
Conread position:
               
245-513
               

               
Cow position:
               
chr3:70389415-70389162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
134, 43
               

               
Conread position:
               
259-528
               

               
Cow position:
               
chr3:37255944-37255680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
63, 21
               

               
Conread position:
               
276-528
               

               
Cow position:
               
chr3:34211996-34211749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
59, 5
               

               
Conread position:
               
280-528
               

               
Cow position:
               
chr3:52026247-52026010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
99, 41
               

               
Conread position:
               
326-528
               

               
Cow position:
               
chr3:5450728-5450526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
140, 95
               

               
Conread position:
               
326-528
               

               
Cow position:
               
chr3:28926046-28925851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 64
               

               
Conread position:
               
332-528
               

               
Cow position:
               
chr3:56389041-56389238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
51, 46
               

               
Conread position:
               
370-528
               

               
Cow position:
               
chr3:75076899-75076744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
8, 52
               

               
Conread position:
               
79-219
               

               
Cow position:
               
chr4:20316387-20316246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
81-219
               

               
Cow position:
               
chr4:21615150-21615015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
48, 105
               

               
Conread position:
               
92-226
               

               
Cow position:
               
chr4:6656425-6656561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
94-220
               

               
Cow position:
               
chr4:32366670-32366796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
26, 101
               

               
Conread position:
               
106-227
               

               
Cow position:
               
chr4:26685816-26685938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
229-461
               

               
Cow position:
               
chr4:56413040-56413265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
148, 99
               

               
Conread position:
               
229-514
               

               
Cow position:
               
chr4:20315184-20314908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 89
               

               
Conread position:
               
229-528
               

               
Cow position:
               
chr4:32366844-32367133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
148, 13
               

               
Conread position:
               
234-438
               

               
Cow position:
               
chr4:21614963-21614769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
143, 52
               

               
Conread position:
               
259-528
               

               
Cow position:
               
chr4:59065098-59064839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
184, 45
               

               
Conread position:
               
307-523
               

               
Cow position:
               
chr4:42610304-42610519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
326-515
               

               
Cow position:
               
chr4:6656684-6656875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
111, 91
               

               
Conread position:
               
326-523
               

               
Cow position:
               
chr4:38655719-38655520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
53, 97
               

               
Conread position:
               
331-528
               

               
Cow position:
               
chr4:20648132-20648334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
18, 95
               

               
Conread position:
               
336-527
               

               
Cow position:
               
chr4:62841334-62841143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
24, 18
               

               
Conread position:
               
338-520
               

               
Cow position:
               
chr4:45788077-45787892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
41, 85
               

               
Conread position:
               
362-528
               

               
Cow position:
               
chr4:27438770-27438934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
398-523
               

               
Cow position:
               
chr4:66308199-66308075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
64, 23
               

               
Conread position:
               
407-528
               

               
Cow position:
               
chr4:1594028-1594149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 19
               

               
Conread position:
               
81-220
               

               
Cow position:
               
chr5:46862282-46862422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
84-217
               

               
Cow position:
               
chr5:67964702-67964569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 72
               

               
Conread position:
               
87-220
               

               
Cow position:
               
chr5:68391716-68391582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
88-234
               

               
Cow position:
               
chr5:18777829-18777974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 99
               

               
Conread position:
               
91-528
               

               
Cow position:
               
chr5:12785105-12785556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 250
               

               
Conread position:
               
96-226
               

               
Cow position:
               
chr5:24887064-24886932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
96-528
               

               
Cow position:
               
chr5:24893501-24893059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
21, 82
               

               
Conread position:
               
229-523
               

               
Cow position:
               
chr5:17044232-17044517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 101
               

               
Conread position:
               
234-506
               

               
Cow position:
               
chr5:46862476-46862740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 41
               

               
Conread position:
               
259-524
               

               
Cow position:
               
chr5:67963551-67963292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
40, 71
               

               
Conread position:
               
276-528
               

               
Cow position:
               
chr5:34547613-34547868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
50, 5
               

               
Conread position:
               
276-528
               

               
Cow position:
               
chr5:60258299-60258045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
61, 150
               

               
Conread position:
               
326-521
               

               
Cow position:
               
chr5:43085530-43085728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
52, 60
               

               
Conread position:
               
329-528
               

               
Cow position:
               
chr5:69111890-69111695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
359-528
               

               
Cow position:
               
chr5:26122378-26122207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
24, 58
               

               
Conread position:
               
366-504
               

               
Cow position:
               
chr5:2319532-2319393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
384-519
               

               
Cow position:
               
chr5:29753994-29753859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
133, 38
               

               
Conread position:
               
418-528
               

               
Cow position:
               
chr5:68391416-68391307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 72
               

               
Conread position:
               
80-220
               

               
Cow position:
               
chr6:68572125-68572262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
39, 21
               

               
Conread position:
               
81-220
               

               
Cow position:
               
chr6:61642921-61642781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
92-220
               

               
Cow position:
               
chr6:22602178-22602049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
92-226
               

               
Cow position:
               
chr6:26207502-26207363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
92-235
               

               
Cow position:
               
chr6:44819916-44820059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
25, 56
               

               
Conread position:
               
101-225
               

               
Cow position:
               
chr6:60258628-60258503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
234-404
               

               
Cow position:
               
chr6:68574150-68574310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
61, 98
               

               
Conread position:
               
234-526
               

               
Cow position:
               
chr6:28437295-28437568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
221, 54
               

               
Conread position:
               
259-503
               

               
Cow position:
               
chr6:22601961-22601715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
73, 44
               

               
Conread position:
               
262-528
               

               
Cow position:
               
chr6:61640742-61640481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
276-528
               

               
Cow position:
               
chr6:11183335-11183568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
326-528
               

               
Cow position:
               
chr6:60061395-60061195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
51, 97
               

               
Conread position:
               
338-528
               

               
Cow position:
               
chr6:44688437-44688626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
48, 84
               

               
Conread position:
               
81-220
               

               
Cow position:
               
chr7:31118039-31117899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
81-220
               

               
Cow position:
               
chr7:43569130-43568990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
81-226
               

               
Cow position:
               
chr7:5343383-5343243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 94
               

               
Conread position:
               
88-220
               

               
Cow position:
               
chr7:44938268-44938409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
89-220
               

               
Cow position:
               
chr7:3168922-3168791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
92-226
               

               
Cow position:
               
chr7:43051809-43051678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 95
               

               
Conread position:
               
92-226
               

               
Cow position:
               
chr7:43870619-43870754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
242-527
               

               
Cow position:
               
chr7:5342104-5341812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
87, 110
               

               
Conread position:
               
276-528
               

               
Cow position:
               
chr7:4438359-4438612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
58, 5
               

               
Conread position:
               
322-528
               

               
Cow position:
               
chr7:4699961-4700165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
55, 100
               

               
Conread position:
               
341-528
               

               
Cow position:
               
chr7:39966942-39966749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
34, 82
               

               
Conread position:
               
387-528
               

               
Cow position:
               
chr7:60265219-60265078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 34
               

               
Conread position:
               
391-528
               

               
Cow position:
               
chr7:4454643-4454778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
391-528
               

               
Cow position:
               
chr7:31117472-31117335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
7, 31
               

               
Conread position:
               
399-528
               

               
Cow position:
               
chr7:5026558-5026685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 22
               

               
Conread position:
               
399-528
               

               
Cow position:
               
chr7:28335541-28335414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
408-528
               

               
Cow position:
               
chr7:47884651-47884768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
413-528
               

               
Cow position:
               
chr7:33468707-33468822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
5, 31
               

               
Conread position:
               
79-220
               

               
Cow position:
               
chr8:48978539-48978680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
38, 127
               

               
Conread position:
               
81-216
               

               
Cow position:
               
chr8:13324284-13324150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 9
               

               
Conread position:
               
81-220
               

               
Cow position:
               
chr8:52022654-52022791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 112
               

               
Conread position:
               
81-425
               

               
Cow position:
               
chr8:5519144-5518807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 130
               

               
Conread position:
               
86-217
               

               
Cow position:
               
chr8:27827435-27827567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
86-220
               

               
Cow position:
               
chr8:6569251-6569118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
31, 25
               

               
Conread position:
               
89-220
               

               
Cow position:
               
chr8:38367511-38367643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
92-211
               

               
Cow position:
               
chr8:45858287-45858164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
92-226
               

               
Cow position:
               
chr8:13847226-13847361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
95-218
               

               
Cow position:
               
chr8:9294560-9294684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
95-226
               

               
Cow position:
               
chr8:1626416-1626285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 119
               

               
Conread position:
               
97-189
               

               
Cow position:
               
chr8:8768487-8768394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
224-528
               

               
Cow position:
               
chr8:35511787-35512085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
158, 35
               

               
Conread position:
               
229-512
               

               
Cow position:
               
chr8:48978725-48979000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
149, 99
               

               
Conread position:
               
234-327
               

               
Cow position:
               
chr8:6569065-6568972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
252-528
               

               
Cow position:
               
chr8:38368172-38368431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
29, 43
               

               
Conread position:
               
259-520
               

               
Cow position:
               
chr8:4051930-4051677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
111, 21
               

               
Conread position:
               
283-528
               

               
Cow position:
               
chr8:33173174-33172921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
54, 148
               

               
Conread position:
               
304-528
               

               
Cow position:
               
chr8:5656943-5656721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
75, 22
               

               
Conread position:
               
309-528
               

               
Cow position:
               
chr8:5653843-5653625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
70, 101
               

               
Conread position:
               
310-528
               

               
Cow position:
               
chr8:54316747-54316968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
67, 28
               

               
Conread position:
               
312-527
               

               
Cow position:
               
chr8:44479761-44479975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
66, 23
               

               
Conread position:
               
326-528
               

               
Cow position:
               
chr8:4935014-4935218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
53, 97
               

               
Conread position:
               
330-520
               

               
Cow position:
               
chr8:6568438-6568255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
53, 66
               

               
Conread position:
               
336-528
               

               
Cow position:
               
chr8:52023822-52024011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
46, 40
               

               
Conread position:
               
341-512
               

               
Cow position:
               
chr8:50704967-50705138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
37, 18
               

               
Conread position:
               
359-516
               

               
Cow position:
               
chr8:13324115-13323957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
27, 65
               

               
Conread position:
               
384-525
               

               
Cow position:
               
chr8:40292283-40292147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
399-528
               

               
Cow position:
               
chr8:21056273-21056147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
42, 22
               

               
Conread position:
               
80-226
               

               
Cow position:
               
chr9:44609946-44609798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
81-191
               

               
Cow position:
               
chr9:5478821-5478710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
81-220
               

               
Cow position:
               
chr9:6126806-6126944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
36, 83
               

               
Conread position:
               
81-220
               

               
Cow position:
               
chr9:6133936-6134075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 60
               

               
Conread position:
               
86-217
               

               
Cow position:
               
chr9:10160231-10160364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
88-217
               

               
Cow position:
               
chr9:7798705-7798576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 98
               

               
Conread position:
               
92-225
               

               
Cow position:
               
chr9:6590205-6590069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
92-227
               

               
Cow position:
               
chr9:10290227-10290362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 74
               

               
Conread position:
               
95-226
               

               
Cow position:
               
chr9:36396901-36396767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
28, 16
               

               
Conread position:
               
229-528
               

               
Cow position:
               
chr9:25799000-25798712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
154, 13
               

               
Conread position:
               
279-521
               

               
Cow position:
               
chr9:44609665-44609426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
99, 48
               

               
Conread position:
               
327-526
               

               
Cow position:
               
chr9:6127187-6127387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
56, 91
               

               
Conread position:
               
361-528
               

               
Cow position:
               
chr9:58556874-58556705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
17, 61
               

               
Conread position:
               
365-528
               

               
Cow position:
               
chr9:45521746-45521910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
89, 57
               

               
Conread position:
               
370-526
               

               
Cow position:
               
chr9:12365043-12364886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
16, 52
               

               
Conread position:
               
392-523
               

               
Cow position:
               
chr9:23950753-23950884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
88, 34
               

               
Conread position:
               
392-528
               

               
Cow position:
               
chr9:6589880-6589748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
392-528
               

               
Cow position:
               
chr9:49457929-49457794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
70, 29
               

               
Conread position:
               
405-528
               

               
Cow position:
               
chr9:5478146-5478027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
70-225
               

               
Cow position:
               
chrX:38674729-38674888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
79-220
               

               
Cow position:
               
chrX:27529443-27529584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
81-190
               

               
Cow position:
               
chrX:36874064-36874174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
81-452
               

               
Cow position:
               
chrX:38740975-38741358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
156, 201
               

               
Conread position:
               
85-226
               

               
Cow position:
               
chrX:34767951-34767808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
86-224
               

               
Cow position:
               
chrX:37251326-37251468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
89-419
               

               
Cow position:
               
chrX:29145346-29145694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
40, 259
               

               
Conread position:
               
89-470
               

               
Cow position:
               
chrX:10062092-10062484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 251
               

               
Conread position:
               
92-217
               

               
Cow position:
               
chrX:3450949-3450823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
92-225
               

               
Cow position:
               
chrX:38129386-38129251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 10
               

               
Conread position:
               
92-228
               

               
Cow position:
               
chrX:33158915-33159054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
95-220
               

               
Cow position:
               
chrX:34635673-34635547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
95-226
               

               
Cow position:
               
chrX:16893456-16893584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
20, 84
               

               
Conread position:
               
96-226
               

               
Cow position:
               
chrX:40315713-40315845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
28, 112
               

               
Conread position:
               
226-526
               

               
Cow position:
               
chrX:29372438-29372731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 102
               

               
Conread position:
               
234-493
               

               
Cow position:
               
chrX:36878145-36878397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
145, 84
               

               
Conread position:
               
261-528
               

               
Cow position:
               
chrX:35981767-35982027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
19, 45
               

               
Conread position:
               
276-516
               

               
Cow position:
               
chrX:14049478-14049256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
276-527
               

               
Cow position:
               
chrX:23323104-23322858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
104, 5
               

               
Conread position:
               
309-453
               

               
Cow position:
               
chrX:27529714-27529858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
72, 113
               

               
Conread position:
               
328-509
               

               
Cow position:
               
chrX:23322294-23322477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
54, 95
               

               
Conread position:
               
341-528
               

               
Cow position:
               
chrX:25179680-25179865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
38, 82
               

               
Conread position:
               
381-528
               

               
Cow position:
               
chrX:29227055-29227201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
80, 22
               

               
Conread position:
               
399-524
               

               
Cow position:
               
chrX:13600756-13600633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
399-526
               

               
Cow position:
               
chrX:34767596-34767471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
62, 22
               

               
Conread position:
               
400-528
               

               
Cow position:
               
chrX:16895782-16895655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
84, 40
               

               
Conread position:
               
401-527
               

               
Cow position:
               
chrX:31910564-31910440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
20, 0