Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8016E10.3 |
| Conread position: | 487-642 |
| Cow position: | chr1:1837189-1837341 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 508-682 |
| Cow position: | chr1:52733985-52733812 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 132, 75 |
| Conread position: | 509-673 |
| Cow position: | chr1:30758446-30758280 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 19, 117 |
| Conread position: | 511-671 |
| Cow position: | chr1:81567032-81566871 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 112, 11 |
| Conread position: | 511-699 |
| Cow position: | chr1:43684806-43684987 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 512-673 |
| Cow position: | chr1:72550331-72550489 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 133, 49 |
| Conread position: | 519-699 |
| Cow position: | chr1:92520291-92520114 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 128, 64 |
| Conread position: | 527-673 |
| Cow position: | chr1:1023915-1024063 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 99 |
| Conread position: | 537-682 |
| Cow position: | chr1:82380343-82380203 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 502-673 |
| Cow position: | chr10:12012254-12012428 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 128, 75 |
| Conread position: | 502-673 |
| Cow position: | chr11:16756942-16756769 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 16 |
| Conread position: | 508-673 |
| Cow position: | chr11:16583729-16583897 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 508-686 |
| Cow position: | chr11:64361989-64361809 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 84 |
| Conread position: | 511-666 |
| Cow position: | chr11:77610272-77610117 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 76 |
| Conread position: | 511-673 |
| Cow position: | chr11:61953844-61954005 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 36 |
| Conread position: | 525-673 |
| Cow position: | chr12:4463777-4463629 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 122, 61 |
| Conread position: | 501-644 |
| Cow position: | chr13:31513680-31513823 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 36, 87 |
| Conread position: | 508-666 |
| Cow position: | chr13:45131428-45131266 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 511-774 |
| Cow position: | chr13:58727244-58727508 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 26, 74 |
| Conread position: | 508-669 |
| Cow position: | chr14:33165225-33165385 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 76 |
| Conread position: | 539-685 |
| Cow position: | chr14:38332030-38332170 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 110, 49 |
| Conread position: | 539-672 |
| Cow position: | chr15:26420670-26420806 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 494-673 |
| Cow position: | chr16:15758827-15759007 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 30, 7 |
| Conread position: | 501-673 |
| Cow position: | chr17:37121107-37120935 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 144, 85 |
| Conread position: | 511-666 |
| Cow position: | chr17:37719288-37719132 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 52, 77 |
| Conread position: | 511-686 |
| Cow position: | chr17:25357513-25357693 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 522-704 |
| Cow position: | chr17:37150307-37150494 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 67 |
| Conread position: | 2-789 |
| Cow position: | chr18:7704026-7703274 (view UCSC Genome Browser custom track) |
| Alignm length: | 798 |
| Alignm identity: | 577 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 150 |
| Conread position: | 801-1223 |
| Cow position: | chr18:7703243-7702825 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 106 |
| Conread position: | 493-774 |
| Cow position: | chr19:29666023-29665749 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 189, 89 |
| Conread position: | 506-672 |
| Cow position: | chr19:43540251-43540414 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 143, 68 |
| Conread position: | 530-689 |
| Cow position: | chr2:60493617-60493457 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 117, 56 |
| Conread position: | 577-952 |
| Cow position: | chr2:55266274-55266651 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 258 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 10, 144 |
| Conread position: | 502-673 |
| Cow position: | chr20:24114742-24114571 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 85, 13 |
| Conread position: | 506-774 |
| Cow position: | chr20:2161129-2160851 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 511-669 |
| Cow position: | chr22:15170134-15170291 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 136, 11 |
| Conread position: | 523-653 |
| Cow position: | chr22:39479007-39478876 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 16, 38 |
| Conread position: | 525-672 |
| Cow position: | chr22:10013479-10013627 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 119, 61 |
| Conread position: | 508-638 |
| Cow position: | chr23:15892107-15892237 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 523-688 |
| Cow position: | chr23:38842250-38842085 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 66 |
| Conread position: | 528-665 |
| Cow position: | chr24:42869078-42868944 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 495-673 |
| Cow position: | chr26:21226697-21226877 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 97 |
| Conread position: | 541-673 |
| Cow position: | chr26:8688096-8688229 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 105, 31 |
| Conread position: | 524-673 |
| Cow position: | chr28:7992247-7992091 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 514-673 |
| Cow position: | chr29:6905466-6905626 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 63, 89 |
| Conread position: | 527-667 |
| Cow position: | chr29:23459202-23459062 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 119, 59 |
| Conread position: | 523-656 |
| Cow position: | chr3:55124721-55124856 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 65 |
| Conread position: | 528-769 |
| Cow position: | chr3:79053074-79053318 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 9, 55 |
| Conread position: | 501-659 |
| Cow position: | chr5:2305606-2305765 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 5, 12 |
| Conread position: | 508-774 |
| Cow position: | chr5:21665644-21665365 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 16, 262 |
| Conread position: | 512-770 |
| Cow position: | chr5:69290603-69290341 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 100, 69 |
| Conread position: | 522-673 |
| Cow position: | chr5:53754975-53755121 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 127, 42 |
| Conread position: | 523-696 |
| Cow position: | chr5:6750020-6750196 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 35 |
| Conread position: | 497-673 |
| Cow position: | chr6:30522355-30522178 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 40, 15 |
| Conread position: | 510-671 |
| Cow position: | chr6:56899368-56899529 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 74 |
| Conread position: | 512-673 |
| Cow position: | chr6:5126918-5127076 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 132, 70 |
| Conread position: | 512-768 |
| Cow position: | chr6:61269895-61269643 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 74 |
| Conread position: | 539-672 |
| Cow position: | chr6:38637830-38637697 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 107, 47 |
| Conread position: | 500-673 |
| Cow position: | chr7:26356429-26356253 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 498-774 |
| Cow position: | chr8:53002464-53002174 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 148, 88 |
| Conread position: | 502-673 |
| Cow position: | chr8:52157888-52157716 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 135, 81 |
| Conread position: | 525-895 |
| Cow position: | chr8:25424358-25423974 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 98, 52 |
| Conread position: | 529-673 |
| Cow position: | chr8:57059942-57060088 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 61 |
| Conread position: | 539-685 |
| Cow position: | chr8:58575981-58575834 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 107, 47 |
| Conread position: | 508-657 |
| Cow position: | chrX:11579368-11579216 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 511-672 |
| Cow position: | chrX:20628889-20629054 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 547-914 |
| Cow position: | chrX:33981122-33980746 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 102, 41 |