Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig3-SRG8019N06.5
        

               Conread position:
               119-397
               

               Cow position:
               chr10:67260296-67260563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               186, 13
               

               Conread position:
               122-348
               

               Cow position:
               chr10:31265819-31266041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               184, 84
               

               Conread position:
               124-380
               

               Cow position:
               chr10:9578735-9578977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               18, 85
               

               Conread position:
               131-385
               

               Cow position:
               chr10:890213-889938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               207
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               95, 16
               

               Conread position:
               132-387
               

               Cow position:
               chr10:24732525-24732281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               174, 13
               

               Conread position:
               135-396
               

               Cow position:
               chr10:29919619-29919874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               167, 101
               

               Conread position:
               136-229
               

               Cow position:
               chr10:50042797-50042703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               95
               

               Alignm identity:
               81
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               136-252
               

               Cow position:
               chr10:14384703-14384820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               94
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               94, 35
               

               Conread position:
               136-263
               

               Cow position:
               chr10:39109515-39109642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               101
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               136-348
               

               Cow position:
               chr10:22566932-22567144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               33, 37
               

               Conread position:
               136-365
               

               Cow position:
               chr10:2190896-2191115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               172, 67
               

               Conread position:
               136-384
               

               Cow position:
               chr10:48366516-48366762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               44, 61
               

               Conread position:
               136-384
               

               Cow position:
               chr10:48500604-48500365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               237, 59
               

               Conread position:
               136-395
               

               Cow position:
               chr10:31373870-31374122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               197, 83
               

               Conread position:
               136-399
               

               Cow position:
               chr10:28776574-28776311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               170, 86
               

               Conread position:
               136-401
               

               Cow position:
               chr10:52167405-52167138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               198
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               93, 143
               

               Conread position:
               137-277
               

               Cow position:
               chr10:36106945-36107079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               107
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               137-375
               

               Cow position:
               chr10:57457849-57457616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               177
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               169, 13
               

               Conread position:
               144-271
               

               Cow position:
               chr10:58259283-58259410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               98
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               144-352
               

               Cow position:
               chr10:18229240-18229457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               144-397
               

               Cow position:
               chr10:59663766-59664010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               182
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               157, 75
               

               Conread position:
               145-242
               

               Cow position:
               chr10:22396442-22396345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               98
               

               Alignm identity:
               81
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               145-398
               

               Cow position:
               chr10:77599-77335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               59, 244
               

               Conread position:
               146-313
               

               Cow position:
               chr10:27203543-27203374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               146-397
               

               Cow position:
               chr10:47725149-47724910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               227, 53
               

               Conread position:
               149-392
               

               Cow position:
               chr10:36291038-36290792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               156, 70
               

               Conread position:
               152-410
               

               Cow position:
               chr10:33371587-33371335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               190
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               156, 70
               

               Conread position:
               154-396
               

               Cow position:
               chr10:59587984-59588212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               168, 10
               

               Conread position:
               155-391
               

               Cow position:
               chr10:51222933-51223160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               146, 9
               

               Conread position:
               190-384
               

               Cow position:
               chr10:22119950-22120146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               116, 52
               

               Conread position:
               199-392
               

               Cow position:
               chr10:35893741-35893937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               154
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               202-392
               

               Cow position:
               chr10:29526739-29526927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               101, 148
               

               Conread position:
               205-397
               

               Cow position:
               chr10:31798248-31798436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               167, 33
               

               Conread position:
               206-398
               

               Cow position:
               chr10:23923171-23922970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               40, 132
               

               Conread position:
               221-378
               

               Cow position:
               chr10:35795481-35795322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               121
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               81, 23
               

               Conread position:
               221-381
               

               Cow position:
               chr10:37822465-37822630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               222-371
               

               Cow position:
               chr10:20505906-20505760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               120
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               79, 51
               

               Conread position:
               228-396
               

               Cow position:
               chr10:24902852-24903020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               145, 47
               

               Conread position:
               234-397
               

               Cow position:
               chr10:33369915-33369751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               124
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               18, 83
               

               Conread position:
               237-396
               

               Cow position:
               chr10:59163980-59164133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               119
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               238-397
               

               Cow position:
               chr10:31791132-31791295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               36, 138
               

               Conread position:
               241-398
               

               Cow position:
               chr10:63276513-63276356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               67, 34
               

               Conread position:
               242-393
               

               Cow position:
               chr10:26209125-26209280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               119
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               244-362
               

               Cow position:
               chr10:19071977-19071856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               95
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               244-364
               

               Cow position:
               chr10:48742408-48742530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               98
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               64, 34
               

               Conread position:
               244-367
               

               Cow position:
               chr10:32986049-32986174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               97
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               244-367
               

               Cow position:
               chr10:37442662-37442537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               105
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               62, 34
               

               Conread position:
               244-369
               

               Cow position:
               chr10:22810937-22811065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               99
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               244-371
               

               Cow position:
               chr10:2260264-2260135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               101
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               62, 118
               

               Conread position:
               244-385
               

               Cow position:
               chr10:52061939-52061796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               244-392
               

               Cow position:
               chr10:20132408-20132560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               118
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               244-396
               

               Cow position:
               chr10:13316059-13315903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               244-396
               

               Cow position:
               chr10:46492875-46493030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               57, 45
               

               Conread position:
               244-397
               

               Cow position:
               chr10:15319006-15318848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               244-397
               

               Cow position:
               chr10:17388960-17388803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               244-397
               

               Cow position:
               chr10:28429384-28429540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               121
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               60, 34
               

               Conread position:
               244-397
               

               Cow position:
               chr10:50042725-50042571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               15, 129
               

               Conread position:
               244-398
               

               Cow position:
               chr10:27749788-27749635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               129, 64
               

               Conread position:
               244-398
               

               Cow position:
               chr10:32573850-32573690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               122
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               58, 37
               

               Conread position:
               244-398
               

               Cow position:
               chr10:38421532-38421688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               245-395
               

               Cow position:
               chr10:15868371-15868217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               245-397
               

               Cow position:
               chr10:24871283-24871128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               61, 33
               

               Conread position:
               245-397
               

               Cow position:
               chr10:67581404-67581248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               246-397
               

               Cow position:
               chr10:23127871-23128023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               60, 8
               

               Conread position:
               246-397
               

               Cow position:
               chr10:47690508-47690351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               246-398
               

               Cow position:
               chr10:11009530-11009372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               246-398
               

               Cow position:
               chr10:52120854-52120699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               56, 37
               

               Conread position:
               247-397
               

               Cow position:
               chr10:12392494-12392645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               111, 42
               

               Conread position:
               247-398
               

               Cow position:
               chr10:56080056-56080209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               16, 35
               

               Conread position:
               248-392
               

               Cow position:
               chr10:18042294-18042148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               112
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               58, 25
               

               Conread position:
               248-396
               

               Cow position:
               chr10:4184312-4184160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               248-397
               

               Cow position:
               chr10:13197715-13197868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               116
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               248-397
               

               Cow position:
               chr10:13586821-13586667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               248-397
               

               Cow position:
               chr10:31004906-31005052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               113
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               109, 26
               

               Conread position:
               248-398
               

               Cow position:
               chr10:2973971-2974126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               64, 33
               

               Conread position:
               249-390
               

               Cow position:
               chr10:13927849-13927704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               249-397
               

               Cow position:
               chr10:15293382-15293229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               120
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               250-395
               

               Cow position:
               chr10:43272930-43273079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               110
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               250-397
               

               Cow position:
               chr10:55122919-55122770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               58, 16
               

               Conread position:
               251-386
               

               Cow position:
               chr10:52309167-52309033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               36, 24
               

               Conread position:
               251-397
               

               Cow position:
               chr10:16986445-16986295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               251-397
               

               Cow position:
               chr10:54477208-54477066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               115
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               10, 25
               

               Conread position:
               252-379
               

               Cow position:
               chr10:13158226-13158094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               105
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               252-379
               

               Cow position:
               chr10:38195865-38195993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               100
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               50, 117
               

               Conread position:
               252-381
               

               Cow position:
               chr10:39258382-39258517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               252-387
               

               Cow position:
               chr10:47543188-47543049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               112
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               252-391
               

               Cow position:
               chr10:55382427-55382284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               108
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               252-397
               

               Cow position:
               chr10:16598800-16598652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               111
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               56, 26
               

               Conread position:
               252-397
               

               Cow position:
               chr10:19372226-19372373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               116
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               53, 14
               

               Conread position:
               252-397
               

               Cow position:
               chr10:19895505-19895362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               115
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               56, 37
               

               Conread position:
               252-397
               

               Cow position:
               chr10:37014746-37014597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               117
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               252-397
               

               Cow position:
               chr10:48316835-48316983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               56, 108
               

               Conread position:
               252-398
               

               Cow position:
               chr10:21564858-21564711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               112
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               252-398
               

               Cow position:
               chr10:23379246-23379096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               252-398
               

               Cow position:
               chr10:25466179-25466029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               252-398
               

               Cow position:
               chr10:47182457-47182606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               252-398
               

               Cow position:
               chr10:52881506-52881656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               252-398
               

               Cow position:
               chr10:62219946-62219795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               113
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               252-399
               

               Cow position:
               chr10:35638033-35638178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               111
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               120, 48
               

               Conread position:
               252-406
               

               Cow position:
               chr10:16645077-16645231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               120, 152
               

               Conread position:
               252-407
               

               Cow position:
               chr10:63932360-63932523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               54, 154
               

               Conread position:
               253-396
               

               Cow position:
               chr10:59675141-59675290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               112
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               254-391
               

               Cow position:
               chr10:45871625-45871484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               107
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               254-398
               

               Cow position:
               chr10:16830275-16830424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               116
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               254-398
               

               Cow position:
               chr10:37295562-37295710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               256-380
               

               Cow position:
               chr10:58149061-58149189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               100
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               257-397
               

               Cow position:
               chr10:10751883-10752025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               112
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               53, 115
               

               Conread position:
               258-395
               

               Cow position:
               chr10:48898772-48898631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               107
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               260-395
               

               Cow position:
               chr10:17844871-17844732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               112
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               260-396
               

               Cow position:
               chr10:63484744-63484605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               108
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               41, 66
               

               Conread position:
               260-397
               

               Cow position:
               chr10:42746019-42745881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               109
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               46, 30
               

               Conread position:
               260-398
               

               Cow position:
               chr10:10153112-10152972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               260-398
               

               Cow position:
               chr10:45658249-45658108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               108
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               45, 90
               

               Conread position:
               260-398
               

               Cow position:
               chr10:47159319-47159177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               260-398
               

               Cow position:
               chr10:55319600-55319458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               260-402
               

               Cow position:
               chr10:6436164-6436018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               261-384
               

               Cow position:
               chr10:17448096-17448225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               45, 17
               

               Conread position:
               261-396
               

               Cow position:
               chr10:41132366-41132229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               107
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               47, 17
               

               Conread position:
               261-397
               

               Cow position:
               chr10:19549385-19549524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               107
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               45, 22
               

               Conread position:
               263-398
               

               Cow position:
               chr10:9656421-9656560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               108
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               263-398
               

               Cow position:
               chr10:34430124-34430263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               264-391
               

               Cow position:
               chr10:6664134-6664003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               104
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               264-405
               

               Cow position:
               chr10:20485459-20485604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               115
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               266-382
               

               Cow position:
               chr10:33462287-33462407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               96
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               272-392
               

               Cow position:
               chr10:15425142-15425022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               100
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               34, 87
               

               Conread position:
               272-397
               

               Cow position:
               chr10:34660150-34660279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               275-397
               

               Cow position:
               chr10:4109677-4109552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               30, 14
               

               Conread position:
               275-397
               

               Cow position:
               chr10:16944562-16944435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               102
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               275-397
               

               Cow position:
               chr10:38322200-38322325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               102
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               31, 111
               

               Conread position:
               278-397
               

               Cow position:
               chr10:29349700-29349575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               99
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               280-384
               

               Cow position:
               chr10:7493516-7493624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               90
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               283-397
               

               Cow position:
               chr10:34700712-34700594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               97
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               101-398
               

               Cow position:
               chr11:59702741-59702455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               200
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               24, 108
               

               Conread position:
               121-218
               

               Cow position:
               chr11:58186074-58185977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               98
               

               Alignm identity:
               81
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               123-397
               

               Cow position:
               chr11:30597233-30596963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               188
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               90, 18
               

               Conread position:
               135-400
               

               Cow position:
               chr11:83578958-83579209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               29, 43
               

               Conread position:
               136-268
               

               Cow position:
               chr11:36128677-36128545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               99
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               136-268
               

               Cow position:
               chr11:77470276-77470408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               102
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               136-269
               

               Cow position:
               chr11:58111757-58111889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               100
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               136-275
               

               Cow position:
               chr11:16796693-16796557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               106
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               136-334
               

               Cow position:
               chr11:80601140-80600951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               170, 66
               

               Conread position:
               136-360
               

               Cow position:
               chr11:70513803-70513595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               8, 84
               

               Conread position:
               136-369
               

               Cow position:
               chr11:56895745-56895976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               176
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               165, 70
               

               Conread position:
               136-375
               

               Cow position:
               chr11:36849144-36848909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               166, 83
               

               Conread position:
               136-396
               

               Cow position:
               chr11:23137839-23138083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               196
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               166, 35
               

               Conread position:
               136-397
               

               Cow position:
               chr11:62778674-62778414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               64, 54
               

               Conread position:
               137-290
               

               Cow position:
               chr11:69294954-69295115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               120
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               137-381
               

               Cow position:
               chr11:37982362-37982592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               166, 69
               

               Conread position:
               137-392
               

               Cow position:
               chr11:79018824-79019084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               26, 110
               

               Conread position:
               137-396
               

               Cow position:
               chr11:53512313-53512058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               27, 72
               

               Conread position:
               138-374
               

               Cow position:
               chr11:34623399-34623167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 81
               

               Conread position:
               141-401
               

               Cow position:
               chr11:10363166-10363420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               158, 83
               

               Conread position:
               144-229
               

               Cow position:
               chr11:56351439-56351524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               86
               

               Alignm identity:
               75
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               144-255
               

               Cow position:
               chr11:5607658-5607547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               112
               

               Alignm identity:
               93
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               144-255
               

               Cow position:
               chr11:48932410-48932520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               112
               

               Alignm identity:
               89
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               144-260
               

               Cow position:
               chr11:70837662-70837778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               97
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               114, 66
               

               Conread position:
               144-290
               

               Cow position:
               chr11:65676362-65676500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               111
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               144-332
               

               Cow position:
               chr11:17991405-17991216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               162, 74
               

               Conread position:
               144-396
               

               Cow position:
               chr11:62609818-62609575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               162, 23
               

               Conread position:
               144-398
               

               Cow position:
               chr11:34693056-34692822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               228, 40
               

               Conread position:
               144-404
               

               Cow position:
               chr11:48272424-48272163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               183
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               160, 80
               

               Conread position:
               145-274
               

               Cow position:
               chr11:21816856-21816984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               105
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               145-304
               

               Cow position:
               chr11:41451800-41451954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               149-268
               

               Cow position:
               chr11:17968451-17968574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               98
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               149-387
               

               Cow position:
               chr11:68975362-68975124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               63, 72
               

               Conread position:
               151-397
               

               Cow position:
               chr11:61958522-61958774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               191
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               82, 149
               

               Conread position:
               153-398
               

               Cow position:
               chr11:18588369-18588617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               169
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               97, 76
               

               Conread position:
               199-397
               

               Cow position:
               chr11:66518655-66518461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               174, 75
               

               Conread position:
               200-397
               

               Cow position:
               chr11:4652803-4653003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               105, 25
               

               Conread position:
               200-397
               

               Cow position:
               chr11:69307675-69307483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               106, 17
               

               Conread position:
               201-364
               

               Cow position:
               chr11:6156166-6156330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               126
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               29, 46
               

               Conread position:
               204-397
               

               Cow position:
               chr11:46427242-46427438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               22, 9
               

               Conread position:
               205-381
               

               Cow position:
               chr11:65842912-65843088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               13, 23
               

               Conread position:
               205-385
               

               Cow position:
               chr11:30804970-30805149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               103, 47
               

               Conread position:
               208-397
               

               Cow position:
               chr11:71168428-71168620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               215-397
               

               Cow position:
               chr11:5789744-5789930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               217-395
               

               Cow position:
               chr11:64867868-64868049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               84, 61
               

               Conread position:
               217-397
               

               Cow position:
               chr11:71341319-71341495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               137
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               89, 50
               

               Conread position:
               221-389
               

               Cow position:
               chr11:72375527-72375705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               134
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               79, 23
               

               Conread position:
               224-347
               

               Cow position:
               chr11:5200438-5200558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               96
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               224-397
               

               Cow position:
               chr11:58938599-58938775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               82, 31
               

               Conread position:
               224-397
               

               Cow position:
               chr11:70826095-70825918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               82, 151
               

               Conread position:
               224-398
               

               Cow position:
               chr11:80761232-80761408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               130
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               27, 8
               

               Conread position:
               225-397
               

               Cow position:
               chr11:22747184-22747358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               127
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               37, 146
               

               Conread position:
               226-393
               

               Cow position:
               chr11:70277970-70278139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               123
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               80, 12
               

               Conread position:
               228-397
               

               Cow position:
               chr11:56290654-56290481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               127
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               233-398
               

               Cow position:
               chr11:3740091-3739922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               34, 11
               

               Conread position:
               241-397
               

               Cow position:
               chr11:29946784-29946944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               122
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               35, 15
               

               Conread position:
               242-387
               

               Cow position:
               chr11:84775202-84775054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               64, 55
               

               Conread position:
               243-397
               

               Cow position:
               chr11:71501005-71501162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               120
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               15, 36
               

               Conread position:
               243-398
               

               Cow position:
               chr11:2344379-2344219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               122
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               7, 33
               

               Conread position:
               244-367
               

               Cow position:
               chr11:4436874-4436748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               99
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               244-396
               

               Cow position:
               chr11:35363607-35363452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               62, 45
               

               Conread position:
               244-396
               

               Cow position:
               chr11:61454390-61454543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               116
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               62, 109
               

               Conread position:
               244-397
               

               Cow position:
               chr11:6633837-6633680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               124
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               244-397
               

               Cow position:
               chr11:15373966-15373808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               120
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               244-397
               

               Cow position:
               chr11:16906924-16907079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               62, 109
               

               Conread position:
               244-397
               

               Cow position:
               chr11:17831094-17831251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               30, 125
               

               Conread position:
               244-397
               

               Cow position:
               chr11:34963196-34963040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               61, 105
               

               Conread position:
               244-397
               

               Cow position:
               chr11:40478725-40478883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               126
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               244-397
               

               Cow position:
               chr11:63909540-63909694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               119
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               62, 107
               

               Conread position:
               244-398
               

               Cow position:
               chr11:27932409-27932244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               29, 39
               

               Conread position:
               244-398
               

               Cow position:
               chr11:58173751-58173594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               61, 102
               

               Conread position:
               245-387
               

               Cow position:
               chr11:46884499-46884353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               245-392
               

               Cow position:
               chr11:48650098-48649947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               115
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               245-392
               

               Cow position:
               chr11:64351666-64351816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               116
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               63, 7
               

               Conread position:
               245-392
               

               Cow position:
               chr11:73983878-73984029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               36, 50
               

               Conread position:
               245-395
               

               Cow position:
               chr11:2084269-2084115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               245-396
               

               Cow position:
               chr11:44017100-44016945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               245-397
               

               Cow position:
               chr11:63919928-63920084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               118
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               246-395
               

               Cow position:
               chr11:67312905-67312752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               246-397
               

               Cow position:
               chr11:47837444-47837290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               247-391
               

               Cow position:
               chr11:33753788-33753929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               48, 63
               

               Conread position:
               247-391
               

               Cow position:
               chr11:47784898-47784750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               247-398
               

               Cow position:
               chr11:35351917-35352070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               68, 127
               

               Conread position:
               248-397
               

               Cow position:
               chr11:29786376-29786529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               34, 20
               

               Conread position:
               248-397
               

               Cow position:
               chr11:48474828-48474673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               249-398
               

               Cow position:
               chr11:6202564-6202411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               54, 18
               

               Conread position:
               250-367
               

               Cow position:
               chr11:63847965-63847847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               97
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               53, 40
               

               Conread position:
               250-376
               

               Cow position:
               chr11:16796346-16796215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               103
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               250-387
               

               Cow position:
               chr11:17517519-17517378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               108
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               250-396
               

               Cow position:
               chr11:13592856-13592706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               250-397
               

               Cow position:
               chr11:53778737-53778586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               251-397
               

               Cow position:
               chr11:82289698-82289552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               115
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               59, 108
               

               Conread position:
               251-398
               

               Cow position:
               chr11:54334448-54334297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               252-396
               

               Cow position:
               chr11:30708622-30708477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               111
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               43, 66
               

               Conread position:
               252-397
               

               Cow position:
               chr11:6233761-6233910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               252-397
               

               Cow position:
               chr11:18508912-18509061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               252-397
               

               Cow position:
               chr11:26143977-26144126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               252-397
               

               Cow position:
               chr11:34136359-34136213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               63, 123
               

               Conread position:
               252-397
               

               Cow position:
               chr11:62889775-62889924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               110
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               252-397
               

               Cow position:
               chr11:63435639-63435491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               114
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               54, 101
               

               Conread position:
               252-397
               

               Cow position:
               chr11:65826632-65826781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               112
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               252-398
               

               Cow position:
               chr11:7560118-7559968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               252-398
               

               Cow position:
               chr11:19591876-19592024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               111
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               54, 123
               

               Conread position:
               252-398
               

               Cow position:
               chr11:29659679-29659528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               117
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               252-398
               

               Cow position:
               chr11:32254099-32254248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               56, 30
               

               Conread position:
               252-398
               

               Cow position:
               chr11:37804435-37804585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               252-398
               

               Cow position:
               chr11:46747742-46747892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               252-398
               

               Cow position:
               chr11:53717691-53717838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               115
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               53, 11
               

               Conread position:
               252-398
               

               Cow position:
               chr11:71868484-71868634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               252-399
               

               Cow position:
               chr11:8683961-8684113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               252-401
               

               Cow position:
               chr11:38236370-38236217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               253-391
               

               Cow position:
               chr11:60470081-60470216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               53, 36
               

               Conread position:
               253-397
               

               Cow position:
               chr11:62168214-62168361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               115
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               53, 44
               

               Conread position:
               254-367
               

               Cow position:
               chr11:60720339-60720455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               95
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               254-394
               

               Cow position:
               chr11:78820266-78820124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               52, 43
               

               Conread position:
               254-398
               

               Cow position:
               chr11:62811413-62811266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               255-367
               

               Cow position:
               chr11:59916261-59916146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               95
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               51, 26
               

               Conread position:
               255-371
               

               Cow position:
               chr11:71767717-71767598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               94
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               256-397
               

               Cow position:
               chr11:13043031-13043176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               258-398
               

               Cow position:
               chr11:1067327-1067471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               260-367
               

               Cow position:
               chr11:63485046-63484938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               111
               

               Alignm identity:
               91
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               46, 19
               

               Conread position:
               260-378
               

               Cow position:
               chr11:49149161-49149038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               98
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               260-391
               

               Cow position:
               chr11:35669842-35669976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               108
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               260-398
               

               Cow position:
               chr11:19247089-19247230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               42, 91
               

               Conread position:
               262-405
               

               Cow position:
               chr11:77745142-77745289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               37, 139
               

               Conread position:
               263-397
               

               Cow position:
               chr11:39462731-39462593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               108
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               263-397
               

               Cow position:
               chr11:49153054-49152919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               109
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               43, 12
               

               Conread position:
               264-401
               

               Cow position:
               chr11:16719352-16719211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               28, 85
               

               Conread position:
               266-397
               

               Cow position:
               chr11:9270622-9270755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               103
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               37, 95
               

               Conread position:
               270-397
               

               Cow position:
               chr11:30638849-30638980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               272-387
               

               Cow position:
               chr11:15682881-15683000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               97
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               272-395
               

               Cow position:
               chr11:30925253-30925128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               97
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               272-395
               

               Cow position:
               chr11:43914390-43914263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               102
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               272-400
               

               Cow position:
               chr11:20602325-20602194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               108
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               34, 54
               

               Conread position:
               273-397
               

               Cow position:
               chr11:41985948-41986076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               273-398
               

               Cow position:
               chr11:27913382-27913253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               101
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               275-397
               

               Cow position:
               chr11:13500111-13499987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               31, 100
               

               Conread position:
               275-397
               

               Cow position:
               chr11:39250067-39249942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               98
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               278-392
               

               Cow position:
               chr11:32782791-32782909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               96
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               279-395
               

               Cow position:
               chr11:36987041-36986921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               96
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               283-396
               

               Cow position:
               chr11:48512251-48512135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               97
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               25, 83
               

               Conread position:
               293-397
               

               Cow position:
               chr11:34106592-34106700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               92
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               121-397
               

               Cow position:
               chr12:17775027-17774743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               105, 23
               

               Conread position:
               123-383
               

               Cow position:
               chr12:39452269-39452528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               195
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               76, 104
               

               Conread position:
               124-400
               

               Cow position:
               chr12:2661185-2661468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               21, 102
               

               Conread position:
               130-257
               

               Cow position:
               chr12:13002388-13002516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               100
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               135-331
               

               Cow position:
               chr12:34459878-34459676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               59, 50
               

               Conread position:
               136-218
               

               Cow position:
               chr12:25541651-25541733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               83
               

               Alignm identity:
               73
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               137-367
               

               Cow position:
               chr12:7515039-7514792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               137-387
               

               Cow position:
               chr12:40269867-40270103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               169, 66
               

               Conread position:
               138-353
               

               Cow position:
               chr12:26962415-26962637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               88, 29
               

               Conread position:
               143-357
               

               Cow position:
               chr12:15790258-15790048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               163, 29
               

               Conread position:
               144-376
               

               Cow position:
               chr12:23912822-23913041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               162, 58
               

               Conread position:
               144-395
               

               Cow position:
               chr12:22894360-22894121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               229, 23
               

               Conread position:
               144-397
               

               Cow position:
               chr12:29779721-29779965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               193
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               162, 71
               

               Conread position:
               144-397
               

               Cow position:
               chr12:32419188-32419422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               162, 81
               

               Conread position:
               144-398
               

               Cow position:
               chr12:45820170-45820418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               161, 74
               

               Conread position:
               145-366
               

               Cow position:
               chr12:8472536-8472762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               156, 74
               

               Conread position:
               149-396
               

               Cow position:
               chr12:4793383-4793146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               222, 68
               

               Conread position:
               178-395
               

               Cow position:
               chr12:4797469-4797251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               128, 58
               

               Conread position:
               201-397
               

               Cow position:
               chr12:7920386-7920191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               149
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               107, 14
               

               Conread position:
               225-371
               

               Cow position:
               chr12:34275743-34275594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               110
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               225-392
               

               Cow position:
               chr12:18572751-18572584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               8, 60
               

               Conread position:
               227-396
               

               Cow position:
               chr12:25445034-25444864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               79, 46
               

               Conread position:
               228-391
               

               Cow position:
               chr12:3879860-3880025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               78, 45
               

               Conread position:
               230-379
               

               Cow position:
               chr12:30226814-30226966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               115
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               65, 48
               

               Conread position:
               235-396
               

               Cow position:
               chr12:8943110-8943274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               125
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               71, 9
               

               Conread position:
               240-387
               

               Cow position:
               chr12:42143271-42143119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               33, 115
               

               Conread position:
               241-391
               

               Cow position:
               chr12:28210171-28210323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               115
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               71, 9
               

               Conread position:
               242-366
               

               Cow position:
               chr12:22469620-22469493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               100
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               244-371
               

               Cow position:
               chr12:27430613-27430482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               101
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               244-372
               

               Cow position:
               chr12:42698140-42698270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               102
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               62, 109
               

               Conread position:
               244-381
               

               Cow position:
               chr12:34165688-34165548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               109
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               68, 45
               

               Conread position:
               244-383
               

               Cow position:
               chr12:25456516-25456371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               110
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               244-395
               

               Cow position:
               chr12:7110303-7110148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               120
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               244-397
               

               Cow position:
               chr12:45167914-45168070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               62, 53
               

               Conread position:
               244-398
               

               Cow position:
               chr12:37993626-37993784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               244-407
               

               Cow position:
               chr12:24222416-24222581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               62, 10
               

               Conread position:
               245-387
               

               Cow position:
               chr12:32051613-32051469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               63, 44
               

               Conread position:
               245-392
               

               Cow position:
               chr12:35368747-35368596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               118
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               245-397
               

               Cow position:
               chr12:3675424-3675578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               246-396
               

               Cow position:
               chr12:42234163-42234006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               60, 48
               

               Conread position:
               246-398
               

               Cow position:
               chr12:31948216-31948063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               115
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               84, 57
               

               Conread position:
               247-388
               

               Cow position:
               chr12:26357269-26357411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               114
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               58, 36
               

               Conread position:
               247-397
               

               Cow position:
               chr12:7978141-7977989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               17, 107
               

               Conread position:
               248-395
               

               Cow position:
               chr12:31269255-31269105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               114
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               60, 35
               

               Conread position:
               248-397
               

               Cow position:
               chr12:23574865-23574712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               47, 40
               

               Conread position:
               248-397
               

               Cow position:
               chr12:41581214-41581063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               5, 95
               

               Conread position:
               248-398
               

               Cow position:
               chr12:10942389-10942235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               248-398
               

               Cow position:
               chr12:25809531-25809377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               249-398
               

               Cow position:
               chr12:7000504-7000655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               59, 79
               

               Conread position:
               249-398
               

               Cow position:
               chr12:16056757-16056910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               117
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               249-398
               

               Cow position:
               chr12:16341992-16341841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               110
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               250-392
               

               Cow position:
               chr12:25441741-25441594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               250-397
               

               Cow position:
               chr12:9914889-9914738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               250-397
               

               Cow position:
               chr12:33976298-33976148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               56, 28
               

               Conread position:
               250-398
               

               Cow position:
               chr12:35770925-35771073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               56, 25
               

               Conread position:
               251-398
               

               Cow position:
               chr12:4341645-4341796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               115
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               252-379
               

               Cow position:
               chr12:24397067-24397196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               103
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               54, 26
               

               Conread position:
               252-379
               

               Cow position:
               chr12:39149954-39150087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               103
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               252-392
               

               Cow position:
               chr12:26868716-26868859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               108
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               63, 97
               

               Conread position:
               252-395
               

               Cow position:
               chr12:18523667-18523515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               252-395
               

               Cow position:
               chr12:42254764-42254619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               114
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               56, 26
               

               Conread position:
               252-396
               

               Cow position:
               chr12:7457447-7457593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               114
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               56, 120
               

               Conread position:
               252-396
               

               Cow position:
               chr12:12532394-12532541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               56, 45
               

               Conread position:
               252-396
               

               Cow position:
               chr12:30661854-30662000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               58, 26
               

               Conread position:
               252-397
               

               Cow position:
               chr12:21780259-21780111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               54, 26
               

               Conread position:
               252-397
               

               Cow position:
               chr12:24152437-24152285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               55, 26
               

               Conread position:
               252-397
               

               Cow position:
               chr12:25355658-25355805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               56, 123
               

               Conread position:
               252-397
               

               Cow position:
               chr12:26749854-26750003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               117
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               252-397
               

               Cow position:
               chr12:35241008-35241156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               56, 37
               

               Conread position:
               252-397
               

               Cow position:
               chr12:42967092-42966949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               56, 37
               

               Conread position:
               252-397
               

               Cow position:
               chr12:45001970-45002118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               112
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               254-371
               

               Cow position:
               chr12:35664052-35663939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               93
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               254-390
               

               Cow position:
               chr12:3586214-3586074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               254-391
               

               Cow position:
               chr12:14223078-14222936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               107
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               254-396
               

               Cow position:
               chr12:27563281-27563427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               254-397
               

               Cow position:
               chr12:42181033-42181180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               119
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               254-398
               

               Cow position:
               chr12:33323399-33323548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               254-399
               

               Cow position:
               chr12:11109850-11109701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               255-397
               

               Cow position:
               chr12:4866912-4866766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               118
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               257-392
               

               Cow position:
               chr12:26147076-26147216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               257-397
               

               Cow position:
               chr12:15163232-15163089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               53, 111
               

               Conread position:
               258-397
               

               Cow position:
               chr12:15700173-15700027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               115
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               9, 64
               

               Conread position:
               259-392
               

               Cow position:
               chr12:43854984-43854848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               112
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               47, 94
               

               Conread position:
               260-392
               

               Cow position:
               chr12:29057479-29057343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               104
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               260-396
               

               Cow position:
               chr12:38774152-38774293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               260-397
               

               Cow position:
               chr12:11587864-11587723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               108
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               260-398
               

               Cow position:
               chr12:4720037-4719895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               109
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               262-397
               

               Cow position:
               chr12:6210071-6210209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               108
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               47, 19
               

               Conread position:
               266-392
               

               Cow position:
               chr12:44517654-44517784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               101
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               271-397
               

               Cow position:
               chr12:18103534-18103660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               102
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               39, 7
               

               Conread position:
               272-397
               

               Cow position:
               chr12:3623772-3623643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               100
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               272-397
               

               Cow position:
               chr12:40157947-40158073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               102
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               34, 60
               

               Conread position:
               274-398
               

               Cow position:
               chr12:45680353-45680225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               100
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               275-384
               

               Cow position:
               chr12:44559925-44559814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               91
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               31, 100
               

               Conread position:
               278-393
               

               Cow position:
               chr12:23106009-23105890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               99
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               278-397
               

               Cow position:
               chr12:4135149-4135026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               100
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               278-397
               

               Cow position:
               chr12:23855904-23855788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               97
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               95, 25
               

               Conread position:
               88-398
               

               Cow position:
               chr13:547170-547491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               35, 46
               

               Conread position:
               115-397
               

               Cow position:
               chr13:51116295-51116026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               207
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               31, 90
               

               Conread position:
               128-397
               

               Cow position:
               chr13:3211286-3211547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               178, 7
               

               Conread position:
               131-233
               

               Cow position:
               chr13:22733163-22733061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               103
               

               Alignm identity:
               84
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               132-232
               

               Cow position:
               chr13:9899924-9900026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               103
               

               Alignm identity:
               88
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               135-381
               

               Cow position:
               chr13:563619-563384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               171, 25
               

               Conread position:
               135-390
               

               Cow position:
               chr13:25450733-25450495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               167, 73
               

               Conread position:
               136-371
               

               Cow position:
               chr13:29631371-29631579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               179
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               170, 35
               

               Conread position:
               136-375
               

               Cow position:
               chr13:42018057-42017834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               168, 58
               

               Conread position:
               136-390
               

               Cow position:
               chr13:9884269-9884526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 139
               

               Conread position:
               136-397
               

               Cow position:
               chr13:51814188-51813938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               199
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               56, 105
               

               Conread position:
               137-268
               

               Cow position:
               chr13:15104797-15104935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               137-385
               

               Cow position:
               chr13:1075299-1075053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               22, 78
               

               Conread position:
               137-392
               

               Cow position:
               chr13:9117818-9117577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               71, 33
               

               Conread position:
               138-304
               

               Cow position:
               chr13:50712842-50713000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               18, 97
               

               Conread position:
               138-391
               

               Cow position:
               chr13:28683095-28683354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               67, 57
               

               Conread position:
               138-415
               

               Cow position:
               chr13:8567482-8567750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               235, 121
               

               Conread position:
               143-398
               

               Cow position:
               chr13:13176387-13176649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               71, 110
               

               Conread position:
               144-365
               

               Cow position:
               chr13:32387250-32387039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               162, 62
               

               Conread position:
               144-397
               

               Cow position:
               chr13:21283949-21283706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               161, 50
               

               Conread position:
               144-397
               

               Cow position:
               chr13:36771685-36771426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               194
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               51, 190
               

               Conread position:
               144-398
               

               Cow position:
               chr13:55316432-55316192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               212, 62
               

               Conread position:
               145-391
               

               Cow position:
               chr13:11095922-11096171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               61, 87
               

               Conread position:
               145-428
               

               Cow position:
               chr13:55727652-55727934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               18, 81
               

               Conread position:
               149-397
               

               Cow position:
               chr13:14771215-14771450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               152, 18
               

               Conread position:
               150-397
               

               Cow position:
               chr13:26369261-26369521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               200
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               61, 197
               

               Conread position:
               156-396
               

               Cow position:
               chr13:38278395-38278152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               171
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               66, 83
               

               Conread position:
               174-397
               

               Cow position:
               chr13:43829026-43829242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               165
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               132, 28
               

               Conread position:
               178-397
               

               Cow position:
               chr13:56148306-56148521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               130, 28
               

               Conread position:
               178-397
               

               Cow position:
               chr13:56160661-56160446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               130, 28
               

               Conread position:
               187-395
               

               Cow position:
               chr13:21294862-21295071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               119, 5
               

               Conread position:
               204-382
               

               Cow position:
               chr13:6608580-6608399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               138
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               11, 72
               

               Conread position:
               207-348
               

               Cow position:
               chr13:6267056-6267200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               212-367
               

               Cow position:
               chr13:15808579-15808733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               94, 26
               

               Conread position:
               218-397
               

               Cow position:
               chr13:17813288-17813469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               88, 6
               

               Conread position:
               218-398
               

               Cow position:
               chr13:20231375-20231193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               92, 116
               

               Conread position:
               221-396
               

               Cow position:
               chr13:43893503-43893325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               22, 55
               

               Conread position:
               221-397
               

               Cow position:
               chr13:13775422-13775245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               85, 23
               

               Conread position:
               224-397
               

               Cow position:
               chr13:1043142-1042971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               37, 66
               

               Conread position:
               224-397
               

               Cow position:
               chr13:37640411-37640586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               130
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               82, 65
               

               Conread position:
               224-397
               

               Cow position:
               chr13:43869289-43869115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               79, 55
               

               Conread position:
               230-398
               

               Cow position:
               chr13:23167268-23167102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               80, 52
               

               Conread position:
               237-385
               

               Cow position:
               chr13:39398488-39398637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               69, 27
               

               Conread position:
               240-397
               

               Cow position:
               chr13:7076093-7076253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               19, 136
               

               Conread position:
               241-397
               

               Cow position:
               chr13:28552429-28552586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               62, 7
               

               Conread position:
               242-397
               

               Cow position:
               chr13:42640224-42640380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               15, 133
               

               Conread position:
               243-397
               

               Cow position:
               chr13:51901424-51901585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               122
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               244-381
               

               Cow position:
               chr13:37517335-37517197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               109
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               17, 130
               

               Conread position:
               244-394
               

               Cow position:
               chr13:47227516-47227364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               62, 31
               

               Conread position:
               244-396
               

               Cow position:
               chr13:53330113-53330275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               121
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               244-397
               

               Cow position:
               chr13:3315834-3315677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               119
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               244-397
               

               Cow position:
               chr13:6183579-6183422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               121
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               244-397
               

               Cow position:
               chr13:38873103-38872950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               118
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               62, 126
               

               Conread position:
               245-390
               

               Cow position:
               chr13:9900001-9900143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               111
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               63, 105
               

               Conread position:
               245-391
               

               Cow position:
               chr13:51940574-51940726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               245-397
               

               Cow position:
               chr13:37381643-37381799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               245-397
               

               Cow position:
               chr13:45352873-45353029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               245-398
               

               Cow position:
               chr13:37775364-37775208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               122
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               63, 44
               

               Conread position:
               245-401
               

               Cow position:
               chr13:37069187-37069347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               247-391
               

               Cow position:
               chr13:2413875-2414021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               53, 34
               

               Conread position:
               247-397
               

               Cow position:
               chr13:6926362-6926515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               59, 27
               

               Conread position:
               247-397
               

               Cow position:
               chr13:19750559-19750713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               119
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               247-397
               

               Cow position:
               chr13:43919414-43919263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               120
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               59, 28
               

               Conread position:
               248-392
               

               Cow position:
               chr13:41157250-41157398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               114
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               49, 41
               

               Conread position:
               248-397
               

               Cow position:
               chr13:20271379-20271228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               58, 30
               

               Conread position:
               248-398
               

               Cow position:
               chr13:25978341-25978194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               48, 27
               

               Conread position:
               248-398
               

               Cow position:
               chr13:42672577-42672424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               60, 12
               

               Conread position:
               249-399
               

               Cow position:
               chr13:26889068-26889222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               57, 38
               

               Conread position:
               250-396
               

               Cow position:
               chr13:24230062-24230211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               119
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               58, 18
               

               Conread position:
               250-397
               

               Cow position:
               chr13:44003549-44003697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               56, 28
               

               Conread position:
               251-395
               

               Cow position:
               chr13:14576061-14576209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               252-370
               

               Cow position:
               chr13:10220810-10220931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               96
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               252-371
               

               Cow position:
               chr13:6113679-6113555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               98
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               252-388
               

               Cow position:
               chr13:21275708-21275848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               106
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               252-392
               

               Cow position:
               chr13:12449137-12448995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               58, 37
               

               Conread position:
               252-395
               

               Cow position:
               chr13:16908066-16908213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               111
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               252-396
               

               Cow position:
               chr13:15993236-15993383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               58, 74
               

               Conread position:
               252-396
               

               Cow position:
               chr13:60509271-60509123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               252-397
               

               Cow position:
               chr13:10925070-10924923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               252-397
               

               Cow position:
               chr13:20137670-20137821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               252-397
               

               Cow position:
               chr13:32017663-32017514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               113
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               252-397
               

               Cow position:
               chr13:37593098-37592948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               126
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               252-398
               

               Cow position:
               chr13:18615231-18615383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               252-398
               

               Cow position:
               chr13:20174591-20174748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               51, 14
               

               Conread position:
               252-398
               

               Cow position:
               chr13:34873438-34873588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               252-398
               

               Cow position:
               chr13:52641099-52640949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               252-398
               

               Cow position:
               chr13:54128746-54128597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               56, 45
               

               Conread position:
               253-397
               

               Cow position:
               chr13:11643789-11643937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               254-396
               

               Cow position:
               chr13:52055741-52055595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               254-397
               

               Cow position:
               chr13:12925628-12925774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               115
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               28, 108
               

               Conread position:
               255-397
               

               Cow position:
               chr13:62007959-62008105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               256-397
               

               Cow position:
               chr13:6974015-6974159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               117
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               50, 42
               

               Conread position:
               257-398
               

               Cow position:
               chr13:15984862-15985009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               259-398
               

               Cow position:
               chr13:19188157-19188300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               107
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               260-371
               

               Cow position:
               chr13:16163439-16163553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               95
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               260-397
               

               Cow position:
               chr13:24110337-24110478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               112
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               260-397
               

               Cow position:
               chr13:55765321-55765180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               111
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               45, 34
               

               Conread position:
               260-398
               

               Cow position:
               chr13:17823093-17822956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               46, 111
               

               Conread position:
               260-398
               

               Cow position:
               chr13:25579333-25579191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               261-397
               

               Cow position:
               chr13:15996892-15997032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               108
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               261-397
               

               Cow position:
               chr13:17563598-17563737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               109
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               261-397
               

               Cow position:
               chr13:17837809-17837948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               45, 17
               

               Conread position:
               261-397
               

               Cow position:
               chr13:37751208-37751069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               45, 94
               

               Conread position:
               262-398
               

               Cow position:
               chr13:24753746-24753886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               266-392
               

               Cow position:
               chr13:51857023-51856892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               103
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               266-397
               

               Cow position:
               chr13:20519924-20520059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               105
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               266-407
               

               Cow position:
               chr13:5263418-5263274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               112
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               44, 141
               

               Conread position:
               275-397
               

               Cow position:
               chr13:25695895-25695770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               100
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               27, 45
               

               Conread position:
               279-397
               

               Cow position:
               chr13:8652567-8652444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               98
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               122-367
               

               Cow position:
               chr14:4044208-4044461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               124-397
               

               Cow position:
               chr14:26097931-26097638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               211
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               126-239
               

               Cow position:
               chr14:26258512-26258398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               91
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               127-387
               

               Cow position:
               chr14:4209287-4209551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               179, 0
               

               Conread position:
               135-219
               

               Cow position:
               chr14:32754391-32754307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               85
               

               Alignm identity:
               76
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               136-297
               

               Cow position:
               chr14:49767049-49767203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               10, 52
               

               Conread position:
               136-367
               

               Cow position:
               chr14:29631742-29631955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               137-258
               

               Cow position:
               chr14:42435344-42435462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               99
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               137-339
               

               Cow position:
               chr14:4357053-4356855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               168, 79
               

               Conread position:
               137-397
               

               Cow position:
               chr14:18763624-18763383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               236, 83
               

               Conread position:
               139-348
               

               Cow position:
               chr14:25675424-25675222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               163, 67
               

               Conread position:
               144-378
               

               Cow position:
               chr14:46125475-46125235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               10, 38
               

               Conread position:
               144-390
               

               Cow position:
               chr14:22582971-22583197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               157, 42
               

               Conread position:
               144-395
               

               Cow position:
               chr14:37155692-37155930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               162, 61
               

               Conread position:
               144-398
               

               Cow position:
               chr14:17238150-17238408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               144-398
               

               Cow position:
               chr14:18657800-18657552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               171, 63
               

               Conread position:
               150-365
               

               Cow position:
               chr14:32470207-32470427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               124, 213
               

               Conread position:
               151-398
               

               Cow position:
               chr14:44257739-44257979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               155, 82
               

               Conread position:
               169-397
               

               Cow position:
               chr14:25824511-25824750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 134
               

               Conread position:
               186-392
               

               Cow position:
               chr14:1868541-1868333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               43, 6
               

               Conread position:
               205-382
               

               Cow position:
               chr14:42276485-42276663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               27, 41
               

               Conread position:
               214-392
               

               Cow position:
               chr14:28306715-28306891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               91, 39
               

               Conread position:
               221-370
               

               Cow position:
               chr14:20070947-20071098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               85, 21
               
221-379UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr14:42440034-42439872 (view  custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               56, 23
               
221-391UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr14:27076853-27077026 (view  custom track)

               
               
               
Alignm length: 175

               
               
               
Alignm identity: 124

               
               
               
Alignm E-value: 1e-21

               
               
               
Alignm gaps (pig, cow): 85, 23
223-395UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr14:42436902-42437076 (view  custom track)

               
               
               
Alignm length: 176

               
               
               
Alignm identity: 140

               
               
               
Alignm E-value: 2e-37

               
               
               
Alignm gaps (pig, cow): 83, 149

               
               
               Conread position:225-389
               
               
               Cow position:chr14:25611365-25611533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):76, 53

               
               
               Conread position:226-398
               
               
               Cow position:chr14:31138860-31138685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):89, 55

               
               
               Conread position:231-397
               
               
               Cow position:chr14:19129391-19129561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:241-395
               
               
               Cow position:chr14:10609576-10609733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:242-397
               
               
               Cow position:chr14:16340894-16341047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 26

               
               
               Conread position:243-395
               
               
               Cow position:chr14:10691729-10691573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):65, 30

               
               
               Conread position:244-382
               
               
               Cow position:chr14:37436813-37436670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr14:18350958-18350802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):62, 19

               
               
               Conread position:244-397
               
               
               Cow position:chr14:22997680-22997522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):27, 52

               
               
               Conread position:244-397
               
               
               Cow position:chr14:37884018-37883861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:244-398
               
               
               Cow position:chr14:10078165-10078324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:244-398
               
               
               Cow position:chr14:28003865-28004022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 132

               
               
               Conread position:244-398
               
               
               Cow position:chr14:45577194-45577036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:245-370
               
               
               Cow position:chr14:25073024-25073152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):61, 44

               
               
               Conread position:245-395
               
               
               Cow position:chr14:12035310-12035460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):61, 33

               
               
               Conread position:245-397
               
               
               Cow position:chr14:24981362-24981510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):61, 30

               
               
               Conread position:245-397
               
               
               Cow position:chr14:38144208-38144052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:246-370
               
               
               Cow position:chr14:27303558-27303685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:246-398
               
               
               Cow position:chr14:42419373-42419217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:247-397
               
               
               Cow position:chr14:33830207-33830356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:249-367
               
               
               Cow position:chr14:14280135-14280256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:249-396
               
               
               Cow position:chr14:1708753-1708602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):61, 126

               
               
               Conread position:249-398
               
               
               Cow position:chr14:30756747-30756899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 98

               
               
               Conread position:250-397
               
               
               Cow position:chr14:8923679-8923529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):60, 31

               
               
               Conread position:250-397
               
               
               Cow position:chr14:11056825-11056678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 12

               
               
               Conread position:250-398
               
               
               Cow position:chr14:34775840-34775690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:251-397
               
               
               Cow position:chr14:3943645-3943495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:252-371
               
               
               Cow position:chr14:18270269-18270389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):58, 14

               
               
               Conread position:252-390
               
               
               Cow position:chr14:4227316-4227174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-391
               
               
               Cow position:chr14:50362700-50362843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:252-392
               
               
               Cow position:chr14:44713325-44713469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr14:7036451-7036302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr14:15428384-15428533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr14:20712781-20712637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 82

               
               
               Conread position:252-398
               
               
               Cow position:chr14:7198404-7198554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:253-377
               
               
               Cow position:chr14:8083106-8083232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 30

               
               
               Conread position:253-397
               
               
               Cow position:chr14:35503267-35503417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:253-397
               
               
               Cow position:chr14:50146786-50146934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):20, 82

               
               
               Conread position:253-398
               
               
               Cow position:chr14:29590701-29590552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:253-398
               
               
               Cow position:chr14:45045506-45045654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:254-396
               
               
               Cow position:chr14:22916382-22916237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 71

               
               
               Conread position:254-397
               
               
               Cow position:chr14:22941822-22941673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:255-376
               
               
               Cow position:chr14:24785567-24785694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:256-392
               
               
               Cow position:chr14:19618841-19618701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):6, 41

               
               
               Conread position:256-398
               
               
               Cow position:chr14:5222372-5222235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):117, 22

               
               
               Conread position:256-399
               
               
               Cow position:chr14:20245259-20245112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:257-397
               
               
               Cow position:chr14:28924079-28924223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:258-397
               
               
               Cow position:chr14:27733519-27733657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):115, 55

               
               
               Conread position:260-391
               
               
               Cow position:chr14:18309391-18309258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:260-397
               
               
               Cow position:chr14:6541812-6541669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr14:12244471-12244329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr14:12954468-12954330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr14:40754333-40754192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-398
               
               
               Cow position:chr14:16237602-16237456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:260-398
               
               
               Cow position:chr14:18941373-18941230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 71

               
               
               Conread position:260-399
               
               
               Cow position:chr14:5630077-5630219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:261-392
               
               
               Cow position:chr14:48496229-48496097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 70

               
               
               Conread position:267-397
               
               
               Cow position:chr14:19863513-19863378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:272-397
               
               
               Cow position:chr14:46997965-46998094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:272-412
               
               
               Cow position:chr14:21406784-21406640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:273-383
               
               
               Cow position:chr14:26456300-26456414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:275-397
               
               
               Cow position:chr14:15039684-15039559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 102

               
               
               Conread position:278-397
               
               
               Cow position:chr14:33309571-33309448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:98-398
               
               
               Cow position:chr15:31175611-31175893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):224, 84

               
               
               Conread position:126-267
               
               
               Cow position:chr15:2140765-2140908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):6, 20

               
               
               Conread position:135-260
               
               
               Cow position:chr15:9497863-9497738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-360
               
               
               Cow position:chr15:13613440-13613644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):169, 11

               
               
               Conread position:136-365
               
               
               Cow position:chr15:12693356-12693597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr15:1984136-1984355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):169, 82

               
               
               Conread position:137-392
               
               
               Cow position:chr15:6273026-6272793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):53, 70

               
               
               Conread position:138-262
               
               
               Cow position:chr15:12656347-12656223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:138-371
               
               
               Cow position:chr15:13250958-13251177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):168, 95

               
               
               Conread position:138-392
               
               
               Cow position:chr15:35441224-35440985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):168, 36

               
               
               Conread position:141-393
               
               
               Cow position:chr15:51633229-51632964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):77, 218

               
               
               Conread position:143-367
               
               
               Cow position:chr15:24953676-24953452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):131, 24

               
               
               Conread position:144-265
               
               
               Cow position:chr15:17261526-17261405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-395
               
               
               Cow position:chr15:10737886-10737644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):95, 142

               
               
               Conread position:146-396
               
               
               Cow position:chr15:5044624-5044376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):7, 63

               
               
               Conread position:149-398
               
               
               Cow position:chr15:17664397-17664141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):150, 38

               
               
               Conread position:151-397
               
               
               Cow position:chr15:5566780-5567026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):107, 161

               
               
               Conread position:177-339
               
               
               Cow position:chr15:42461994-42462155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):128, 29

               
               
               Conread position:177-398
               
               
               Cow position:chr15:14261369-14261156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):131, 59

               
               
               Conread position:200-395
               
               
               Cow position:chr15:39316941-39316742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:159
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:200-397
               
               
               Cow position:chr15:21389263-21389065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 12

               
               
               Conread position:208-362
               
               
               Cow position:chr15:23927972-23927816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):98, 26

               
               
               Conread position:210-397
               
               
               Cow position:chr15:35945445-35945631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):92, 10

               
               
               Conread position:221-392
               
               
               Cow position:chr15:5072164-5071988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:221-397
               
               
               Cow position:chr15:39520091-39520270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):85, 23

               
               
               Conread position:223-397
               
               
               Cow position:chr15:225869-225702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):150, 23

               
               
               Conread position:223-398
               
               
               Cow position:chr15:38935338-38935511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 23

               
               
               Conread position:224-381
               
               
               Cow position:chr15:20725991-20725832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):92, 138

               
               
               Conread position:224-398
               
               
               Cow position:chr15:21166496-21166322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):84, 23

               
               
               Conread position:228-396
               
               
               Cow position:chr15:10431741-10431914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:232-391
               
               
               Cow position:chr15:44280035-44280198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:234-396
               
               
               Cow position:chr15:22871549-22871710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):72, 88

               
               
               Conread position:237-398
               
               
               Cow position:chr15:27900571-27900408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):71, 8

               
               
               Conread position:239-397
               
               
               Cow position:chr15:39621277-39621440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:242-381
               
               
               Cow position:chr15:42190388-42190529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:242-395
               
               
               Cow position:chr15:12870921-12870764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:242-397
               
               
               Cow position:chr15:13554300-13554455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):59, 8

               
               
               Conread position:243-372
               
               
               Cow position:chr15:5964159-5964030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 103

               
               
               Conread position:243-397
               
               
               Cow position:chr15:22984523-22984676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):66, 35

               
               
               Conread position:244-370
               
               
               Cow position:chr15:23780122-23779997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:244-395
               
               
               Cow position:chr15:17162140-17162295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-396
               
               
               Cow position:chr15:5726270-5726426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr15:2141358-2141201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr15:33976750-33976586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:245-395
               
               
               Cow position:chr15:915893-915743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):62, 30

               
               
               Conread position:245-396
               
               
               Cow position:chr15:20459362-20459205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:245-397
               
               
               Cow position:chr15:10608359-10608204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:245-397
               
               
               Cow position:chr15:31024939-31025094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:246-387
               
               
               Cow position:chr15:12357566-12357709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 37

               
               
               Conread position:247-381
               
               
               Cow position:chr15:4500651-4500789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:247-398
               
               
               Cow position:chr15:12596-12751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:248-417
               
               
               Cow position:chr15:4485104-4485276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 26

               
               
               Conread position:249-391
               
               
               Cow position:chr15:22939375-22939229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:249-397
               
               
               Cow position:chr15:18776800-18776649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 11

               
               
               Conread position:249-397
               
               
               Cow position:chr15:39286458-39286307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:250-392
               
               
               Cow position:chr15:31637253-31637398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 28

               
               
               Conread position:250-395
               
               
               Cow position:chr15:52432294-52432446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:250-397
               
               
               Cow position:chr15:16583739-16583594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 122

               
               
               Conread position:250-397
               
               
               Cow position:chr15:43626421-43626571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:251-398
               
               
               Cow position:chr15:9465629-9465780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr15:4248104-4248250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:252-397
               
               
               Cow position:chr15:5158327-5158476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr15:20534497-20534348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr15:32324252-32324106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 94

               
               
               Conread position:252-397
               
               
               Cow position:chr15:36793541-36793392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 27

               
               
               Conread position:252-398
               
               
               Cow position:chr15:20487250-20487100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr15:31028704-31028554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr15:36435158-36435308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:252-399
               
               
               Cow position:chr15:17196101-17196251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):53, 146

               
               
               Conread position:253-397
               
               
               Cow position:chr15:35205199-35205044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 37

               
               
               Conread position:253-397
               
               
               Cow position:chr15:36388245-36388393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:253-398
               
               
               Cow position:chr15:12203503-12203652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:253-398
               
               
               Cow position:chr15:17233147-17233296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:254-397
               
               
               Cow position:chr15:21941890-21941744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):48, 87

               
               
               Conread position:254-397
               
               
               Cow position:chr15:31928941-31928794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:254-398
               
               
               Cow position:chr15:52482873-52482725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:254-398
               
               
               Cow position:chr15:53163976-53164124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:256-396
               
               
               Cow position:chr15:2953177-2953033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:256-397
               
               
               Cow position:chr15:41528015-41527874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):52, 105

               
               
               Conread position:257-397
               
               
               Cow position:chr15:9781428-9781569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):8, 114

               
               
               Conread position:259-397
               
               
               Cow position:chr15:795062-794919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:260-396
               
               
               Cow position:chr15:1297702-1297840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:260-397
               
               
               Cow position:chr15:24797845-24797708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):113, 49

               
               
               Conread position:260-398
               
               
               Cow position:chr15:9106995-9107137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:261-397
               
               
               Cow position:chr15:14176537-14176397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:261-397
               
               
               Cow position:chr15:15154263-15154402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:261-397
               
               
               Cow position:chr15:26919313-26919173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:262-391
               
               
               Cow position:chr15:49922097-49922230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:263-390
               
               
               Cow position:chr15:20370491-20370359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:263-398
               
               
               Cow position:chr15:28924792-28924652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:264-398
               
               
               Cow position:chr15:31857556-31857694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:265-392
               
               
               Cow position:chr15:1804372-1804238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:266-391
               
               
               Cow position:chr15:5717680-5717806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:266-397
               
               
               Cow position:chr15:6037486-6037353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:266-397
               
               
               Cow position:chr15:9497533-9497398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:271-397
               
               
               Cow position:chr15:47843279-47843149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:272-397
               
               
               Cow position:chr15:21821951-21821822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:273-397
               
               
               Cow position:chr15:44658337-44658461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):100, 105

               
               
               Conread position:273-398
               
               
               Cow position:chr15:49491621-49491747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 16

               
               
               Conread position:274-391
               
               
               Cow position:chr15:6128988-6128870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):104, 79

               
               
               Conread position:275-371
               
               
               Cow position:chr15:16230198-16230297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:84
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:279-397
               
               
               Cow position:chr15:37205028-37205150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:105-398
               
               
               Cow position:chr16:11102555-11102834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):267, 16

               
               
               Conread position:113-361
               
               
               Cow position:chr16:7601251-7601017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:132-335
               
               
               Cow position:chr16:39238508-39238299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):174, 96

               
               
               Conread position:135-371
               
               
               Cow position:chr16:41038223-41037996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:136-237
               
               
               Cow position:chr16:17143142-17143041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:83
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-371
               
               
               Cow position:chr16:39416608-39416820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):170, 35

               
               
               Conread position:136-398
               
               
               Cow position:chr16:17291779-17292035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):170, 59

               
               
               Conread position:137-371
               
               
               Cow position:chr16:52705843-52706061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):169, 81

               
               
               Conread position:137-384
               
               
               Cow position:chr16:53614328-53614097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):236, 96

               
               
               Conread position:137-397
               
               
               Cow position:chr16:11391154-11390891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):169, 55

               
               
               Conread position:138-352
               
               
               Cow position:chr16:48099702-48099494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):25, 47

               
               
               Conread position:138-392
               
               
               Cow position:chr16:7550213-7549961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 81

               
               
               Conread position:138-398
               
               
               Cow position:chr16:54084287-54084023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):152, 118

               
               
               Conread position:144-232
               
               
               Cow position:chr16:31159152-31159240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:79
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-395
               
               
               Cow position:chr16:16945060-16945308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):158, 113

               
               
               Conread position:144-397
               
               
               Cow position:chr16:6310470-6310713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):161, 74

               
               
               Conread position:145-395
               
               
               Cow position:chr16:7499295-7499045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 54

               
               
               Conread position:145-398
               
               
               Cow position:chr16:46353348-46353609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:148-394
               
               
               Cow position:chr16:39202378-39202129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):68, 28

               
               
               Conread position:149-289
               
               
               Cow position:chr16:13448978-13448841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:152-381
               
               
               Cow position:chr16:52803728-52803951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):156, 49

               
               
               Conread position:156-398
               
               
               Cow position:chr16:496149-496389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):150, 119

               
               
               Conread position:185-378
               
               
               Cow position:chr16:35297284-35297086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:202-362
               
               
               Cow position:chr16:17424821-17424971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:202-395
               
               
               Cow position:chr16:43675062-43674863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:203-363
               
               
               Cow position:chr16:27032763-27032599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):33, 43

               
               
               Conread position:205-397
               
               
               Cow position:chr16:55968619-55968430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):168, 59

               
               
               Conread position:206-353
               
               
               Cow position:chr16:47374019-47374163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:209-393
               
               
               Cow position:chr16:22804413-22804606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:210-405
               
               
               Cow position:chr16:20265380-20265580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):62, 169

               
               
               Conread position:211-392
               
               
               Cow position:chr16:13414491-13414673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 33

               
               
               Conread position:214-397
               
               
               Cow position:chr16:33530584-33530397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:226-397
               
               
               Cow position:chr16:9500679-9500510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):79, 48

               
               
               Conread position:226-398
               
               
               Cow position:chr16:3114702-3114526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:228-372
               
               
               Cow position:chr16:16280214-16280360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):78, 45

               
               
               Conread position:228-388
               
               
               Cow position:chr16:51382466-51382623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):74, 47

               
               
               Conread position:229-372
               
               
               Cow position:chr16:11922868-11923015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):70, 49

               
               
               Conread position:239-391
               
               
               Cow position:chr16:24202717-24202871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 118

               
               
               Conread position:241-397
               
               
               Cow position:chr16:54734384-54734227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 76

               
               
               Conread position:241-398
               
               
               Cow position:chr16:18048008-18048168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):69, 11

               
               
               Conread position:241-398
               
               
               Cow position:chr16:31575291-31575131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:242-397
               
               
               Cow position:chr16:24403283-24403440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):66, 54

               
               
               Conread position:242-397
               
               
               Cow position:chr16:48448868-48448711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):66, 36

               
               
               Conread position:243-397
               
               
               Cow position:chr16:8273692-8273850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:244-372
               
               
               Cow position:chr16:9986924-9987054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:244-381
               
               
               Cow position:chr16:15203224-15203363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 128

               
               
               Conread position:244-391
               
               
               Cow position:chr16:22841913-22842063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 90

               
               
               Conread position:244-392
               
               
               Cow position:chr16:4059500-4059349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:244-392
               
               
               Cow position:chr16:10945295-10945445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):6, 46

               
               
               Conread position:244-397
               
               
               Cow position:chr16:1415158-1415310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):64, 109

               
               
               Conread position:244-397
               
               
               Cow position:chr16:15960145-15960302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr16:18353812-18353968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 137

               
               
               Conread position:244-397
               
               
               Cow position:chr16:52133373-52133529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 34

               
               
               Conread position:244-398
               
               
               Cow position:chr16:9279972-9280130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:244-398
               
               
               Cow position:chr16:29026350-29026195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:244-398
               
               
               Cow position:chr16:45299782-45299941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:244-398
               
               
               Cow position:chr16:52365084-52364926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 87

               
               
               Conread position:245-381
               
               
               Cow position:chr16:12091517-12091659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:246-384
               
               
               Cow position:chr16:56670776-56670918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:246-397
               
               
               Cow position:chr16:7619040-7619189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 45

               
               
               Conread position:246-397
               
               
               Cow position:chr16:45046982-45046824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 104

               
               
               Conread position:246-398
               
               
               Cow position:chr16:4938236-4938080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:246-398
               
               
               Cow position:chr16:17143072-17142921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 28

               
               
               Conread position:246-399
               
               
               Cow position:chr16:51610691-51610848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:247-391
               
               
               Cow position:chr16:6232398-6232250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):37, 30

               
               
               Conread position:247-396
               
               
               Cow position:chr16:56875524-56875674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:248-398
               
               
               Cow position:chr16:42444294-42444143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):58, 18

               
               
               Conread position:248-398
               
               
               Cow position:chr16:46548128-46548282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:250-395
               
               
               Cow position:chr16:12220820-12220671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:250-396
               
               
               Cow position:chr16:8673474-8673620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):52, 39

               
               
               Conread position:250-397
               
               
               Cow position:chr16:9830583-9830433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:250-397
               
               
               Cow position:chr16:23955693-23955844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:251-392
               
               
               Cow position:chr16:6319341-6319195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:251-397
               
               
               Cow position:chr16:12097779-12097629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:251-397
               
               
               Cow position:chr16:15726222-15726370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 121

               
               
               Conread position:251-398
               
               
               Cow position:chr16:14568354-14568502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:252-391
               
               
               Cow position:chr16:32301869-32302013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-392
               
               
               Cow position:chr16:38663574-38663717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 90

               
               
               Conread position:252-397
               
               
               Cow position:chr16:2223260-2223409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr16:7665774-7665625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr16:15023494-15023643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr16:33632544-33632687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):120, 51

               
               
               Conread position:252-397
               
               
               Cow position:chr16:43308426-43308572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):56, 129

               
               
               Conread position:252-397
               
               
               Cow position:chr16:56082228-56082377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr16:9497130-9497281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr16:14841498-14841346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr16:29527959-29527816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):121, 48

               
               
               Conread position:252-398
               
               
               Cow position:chr16:50442686-50442535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:252-408
               
               
               Cow position:chr16:13996059-13996218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 134

               
               
               Conread position:254-392
               
               
               Cow position:chr16:49229636-49229775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:254-395
               
               
               Cow position:chr16:18757702-18757847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):20, 123

               
               
               Conread position:254-398
               
               
               Cow position:chr16:4910390-4910538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:254-406
               
               
               Cow position:chr16:50286647-50286492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 116

               
               
               Conread position:255-378
               
               
               Cow position:chr16:38355297-38355422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:255-393
               
               
               Cow position:chr16:7496387-7496248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):51, 7

               
               
               Conread position:255-397
               
               
               Cow position:chr16:56796532-56796678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:256-382
               
               
               Cow position:chr16:28199162-28199032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):5, 112

               
               
               Conread position:256-397
               
               
               Cow position:chr16:820385-820238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:256-397
               
               
               Cow position:chr16:51112747-51112890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):49, 118

               
               
               Conread position:257-397
               
               
               Cow position:chr16:22329293-22329149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:257-397
               
               
               Cow position:chr16:38243531-38243673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 115

               
               
               Conread position:260-392
               
               
               Cow position:chr16:30601550-30601414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-395
               
               
               Cow position:chr16:13712804-13712943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-395
               
               
               Cow position:chr16:18206087-18205950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:260-395
               
               
               Cow position:chr16:22773107-22772969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:260-397
               
               
               Cow position:chr16:25380366-25380508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr16:48086741-48086880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr16:55945012-55945152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 18

               
               
               Conread position:260-401
               
               
               Cow position:chr16:7812819-7812673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-407
               
               
               Cow position:chr16:10032767-10032618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):48, 29

               
               
               Conread position:261-393
               
               
               Cow position:chr16:26676558-26676694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:261-395
               
               
               Cow position:chr16:56665702-56665565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:261-397
               
               
               Cow position:chr16:39165368-39165228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):13, 123

               
               
               Conread position:262-396
               
               
               Cow position:chr16:41530173-41530311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:266-399
               
               
               Cow position:chr16:30358940-30359077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:267-392
               
               
               Cow position:chr16:8933306-8933432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 86

               
               
               Conread position:268-397
               
               
               Cow position:chr16:4399856-4399723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:268-397
               
               
               Cow position:chr16:42432989-42433123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:269-397
               
               
               Cow position:chr16:42340316-42340184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:272-397
               
               
               Cow position:chr16:8025738-8025867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:272-397
               
               
               Cow position:chr16:49169264-49169393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:272-397
               
               
               Cow position:chr16:51697202-51697071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:272-398
               
               
               Cow position:chr16:9596487-9596357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:274-397
               
               
               Cow position:chr16:9578377-9578503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:117-364
               
               
               Cow position:chr17:27464666-27464427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):198, 34

               
               
               Conread position:135-398
               
               
               Cow position:chr17:1409946-1410211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):156, 114

               
               
               Conread position:136-257
               
               
               Cow position:chr17:10234561-10234683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:136-263
               
               
               Cow position:chr17:4813886-4814013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):118, 125

               
               
               Conread position:136-395
               
               
               Cow position:chr17:39715430-39715190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):137, 38

               
               
               Conread position:136-397
               
               
               Cow position:chr17:8544572-8544332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):166, 34

               
               
               Conread position:137-373
               
               
               Cow position:chr17:20185541-20185295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:137-395
               
               
               Cow position:chr17:2662720-2662454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):34, 121

               
               
               Conread position:141-249
               
               
               Cow position:chr17:35410798-35410906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:141-397
               
               
               Cow position:chr17:5743017-5743263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):165, 30

               
               
               Conread position:144-285
               
               
               Cow position:chr17:24766687-24766829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):120, 59

               
               
               Conread position:144-383
               
               
               Cow position:chr17:25159560-25159802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):103, 28

               
               
               Conread position:144-395
               
               
               Cow position:chr17:25193260-25193497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):162, 61

               
               
               Conread position:144-398
               
               
               Cow position:chr17:15340489-15340727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):225, 27

               
               
               Conread position:144-398
               
               
               Cow position:chr17:25718379-25718130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):158, 75

               
               
               Conread position:144-398
               
               
               Cow position:chr17:25796037-25796310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:144-401
               
               
               Cow position:chr17:9117917-9117668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):162, 75

               
               
               Conread position:146-397
               
               
               Cow position:chr17:6849060-6848825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):160, 28

               
               
               Conread position:190-392
               
               
               Cow position:chr17:11214993-11215197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):91, 27

               
               
               Conread position:199-392
               
               
               Cow position:chr17:10508198-10508401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 89

               
               
               Conread position:200-383
               
               
               Cow position:chr17:969111-968926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:200-397
               
               
               Cow position:chr17:5720099-5719899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 6

               
               
               Conread position:200-397
               
               
               Cow position:chr17:37430279-37430477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:200-397
               
               
               Cow position:chr17:40288774-40288972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):106, 24

               
               
               Conread position:208-397
               
               
               Cow position:chr17:12342265-12342453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:222-392
               
               
               Cow position:chr17:21655649-21655478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):84, 56

               
               
               Conread position:224-397
               
               
               Cow position:chr17:28814290-28814465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):82, 10

               
               
               Conread position:227-397
               
               
               Cow position:chr17:8079514-8079340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:233-396
               
               
               Cow position:chr17:31991123-31990962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):73, 11

               
               
               Conread position:237-382
               
               
               Cow position:chr17:5344806-5344660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):69, 9

               
               
               Conread position:238-397
               
               
               Cow position:chr17:22056837-22057000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-392
               
               
               Cow position:chr17:23702815-23702656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:240-397
               
               
               Cow position:chr17:5900554-5900397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:240-397
               
               
               Cow position:chr17:22074309-22074470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:240-398
               
               
               Cow position:chr17:34860568-34860400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:244-371
               
               
               Cow position:chr17:20306507-20306381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):62, 31

               
               
               Conread position:244-387
               
               
               Cow position:chr17:25139449-25139301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:244-387
               
               
               Cow position:chr17:35541985-35542132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:244-395
               
               
               Cow position:chr17:21788475-21788629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:244-396
               
               
               Cow position:chr17:20874580-20874425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):62, 34

               
               
               Conread position:244-397
               
               
               Cow position:chr17:11280915-11281074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr17:17410478-17410321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr17:26231139-26230982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr17:27202867-27203018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:244-397
               
               
               Cow position:chr17:38833228-38833069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-398
               
               
               Cow position:chr17:21922448-21922607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:245-396
               
               
               Cow position:chr17:1463147-1463302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:245-397
               
               
               Cow position:chr17:7571287-7571131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:246-385
               
               
               Cow position:chr17:19899074-19898932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:246-391
               
               
               Cow position:chr17:27058375-27058523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):60, 32

               
               
               Conread position:246-392
               
               
               Cow position:chr17:7590276-7590430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:246-395
               
               
               Cow position:chr17:21738691-21738844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:246-396
               
               
               Cow position:chr17:32553874-32554018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):60, 14

               
               
               Conread position:246-399
               
               
               Cow position:chr17:32138242-32138398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 32

               
               
               Conread position:247-390
               
               
               Cow position:chr17:27303787-27303933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):55, 115

               
               
               Conread position:248-398
               
               
               Cow position:chr17:21744111-21743958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:249-366
               
               
               Cow position:chr17:3387896-3387777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):59, 47

               
               
               Conread position:249-398
               
               
               Cow position:chr17:25189467-25189316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):14, 113

               
               
               Conread position:250-371
               
               
               Cow position:chr17:8723256-8723379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 13

               
               
               Conread position:250-396
               
               
               Cow position:chr17:20884702-20884552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:250-397
               
               
               Cow position:chr17:20992864-20993009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 28

               
               
               Conread position:250-397
               
               
               Cow position:chr17:21959509-21959660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:250-401
               
               
               Cow position:chr17:21363559-21363405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:251-388
               
               
               Cow position:chr17:10803054-10802918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):57, 38

               
               
               Conread position:251-396
               
               
               Cow position:chr17:5012897-5013047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):57, 104

               
               
               Conread position:252-371
               
               
               Cow position:chr17:6787114-6786991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:252-392
               
               
               Cow position:chr17:21236699-21236559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):56, 116

               
               
               Conread position:252-395
               
               
               Cow position:chr17:14025733-14025881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-396
               
               
               Cow position:chr17:20929418-20929270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:252-396
               
               
               Cow position:chr17:21972953-21973101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-396
               
               
               Cow position:chr17:25467159-25467016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 119

               
               
               Conread position:252-397
               
               
               Cow position:chr17:1492972-1493121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr17:21806275-21806424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr17:37816018-37816165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr17:40355435-40355286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr17:40741829-40741676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr17:20932507-20932358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:252-398
               
               
               Cow position:chr17:24559467-24559317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr17:25342566-25342714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:252-398
               
               
               Cow position:chr17:29080715-29080571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr17:40673547-40673397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-401
               
               
               Cow position:chr17:18201933-18201781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:252-425
               
               
               Cow position:chr17:13414191-13414368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:253-371
               
               
               Cow position:chr17:25122070-25122189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:253-397
               
               
               Cow position:chr17:43957836-43957688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:254-397
               
               
               Cow position:chr17:5012013-5011866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 133

               
               
               Conread position:254-397
               
               
               Cow position:chr17:27292282-27292429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:256-397
               
               
               Cow position:chr17:11831944-11832087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):50, 19

               
               
               Conread position:258-396
               
               
               Cow position:chr17:39857556-39857419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):115, 50

               
               
               Conread position:258-397
               
               
               Cow position:chr17:7143031-7142889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 26

               
               
               Conread position:259-396
               
               
               Cow position:chr17:950142-950004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 101

               
               
               Conread position:260-371
               
               
               Cow position:chr17:42346850-42346964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-390
               
               
               Cow position:chr17:24077570-24077438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:260-397
               
               
               Cow position:chr17:2275639-2275498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr17:15684679-15684537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-398
               
               
               Cow position:chr17:12289240-12289382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-398
               
               
               Cow position:chr17:24862627-24862485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:261-397
               
               
               Cow position:chr17:25126517-25126378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 22

               
               
               Conread position:262-397
               
               
               Cow position:chr17:14003992-14003851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:263-397
               
               
               Cow position:chr17:31856837-31856701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:266-398
               
               
               Cow position:chr17:6329278-6329142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:267-392
               
               
               Cow position:chr17:25930378-25930506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:268-397
               
               
               Cow position:chr17:35334256-35334123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:272-397
               
               
               Cow position:chr17:20848679-20848551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 94

               
               
               Conread position:272-397
               
               
               Cow position:chr17:20904945-20905071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:278-398
               
               
               Cow position:chr17:26730460-26730584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:115-351
               
               
               Cow position:chr18:38438568-38438790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):191, 29

               
               
               Conread position:126-397
               
               
               Cow position:chr18:16997496-16997208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):85, 25

               
               
               Conread position:127-312
               
               
               Cow position:chr18:43020152-43020337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):138, 153

               
               
               Conread position:128-328
               
               
               Cow position:chr18:35536989-35537191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):148, 161

               
               
               Conread position:133-336
               
               
               Cow position:chr18:30570274-30570486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):12, 143

               
               
               Conread position:134-322
               
               
               Cow position:chr18:26343458-26343656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:135-272
               
               
               Cow position:chr18:871895-871762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:136-225
               
               
               Cow position:chr18:19676287-19676198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:90
               
               
               Alignm identity:78
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-372
               
               
               Cow position:chr18:33607162-33606945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):170, 87

               
               
               Conread position:136-396
               
               
               Cow position:chr18:47966716-47966968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):166, 69

               
               
               Conread position:136-397
               
               
               Cow position:chr18:21266715-21266460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):157, 24

               
               
               Conread position:137-293
               
               
               Cow position:chr18:39084403-39084248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:137-392
               
               
               Cow position:chr18:19433991-19433722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:137-397
               
               
               Cow position:chr18:1607476-1607208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):79, 40

               
               
               Conread position:137-397
               
               
               Cow position:chr18:27109085-27109338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):169, 34

               
               
               Conread position:138-269
               
               
               Cow position:chr18:4932421-4932292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:138-290
               
               
               Cow position:chr18:31125532-31125385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:138-302
               
               
               Cow position:chr18:34762266-34762432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:138-385
               
               
               Cow position:chr18:24529669-24529903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):172, 85

               
               
               Conread position:138-389
               
               
               Cow position:chr18:4623931-4624185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):95, 64

               
               
               Conread position:144-277
               
               
               Cow position:chr18:18699326-18699194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:144-367
               
               
               Cow position:chr18:43060883-43061105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):160, 96

               
               
               Conread position:144-398
               
               
               Cow position:chr18:4872289-4872025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):62, 187

               
               
               Conread position:145-397
               
               
               Cow position:chr18:35012115-35012363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):156, 61

               
               
               Conread position:154-381
               
               
               Cow position:chr18:49982929-49982700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 123

               
               
               Conread position:154-418
               
               
               Cow position:chr18:11263019-11262771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):152, 52

               
               
               Conread position:172-390
               
               
               Cow position:chr18:39022418-39022217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):197, 5

               
               
               Conread position:181-397
               
               
               Cow position:chr18:56190785-56191007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 83

               
               
               Conread position:204-397
               
               
               Cow position:chr18:22214633-22214442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):102, 56

               
               
               Conread position:208-391
               
               
               Cow position:chr18:38757687-38757878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:221-401
               
               
               Cow position:chr18:19962014-19962191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 25

               
               
               Conread position:223-389
               
               
               Cow position:chr18:19272964-19273134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:226-397
               
               
               Cow position:chr18:39434952-39434781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 23

               
               
               Conread position:228-398
               
               
               Cow position:chr18:46072582-46072416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 38

               
               
               Conread position:230-396
               
               
               Cow position:chr18:10656558-10656392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):76, 6

               
               
               Conread position:235-398
               
               
               Cow position:chr18:50974175-50974341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):71, 11

               
               
               Conread position:238-392
               
               
               Cow position:chr18:5701366-5701207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 125

               
               
               Conread position:242-397
               
               
               Cow position:chr18:43555411-43555570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):19, 15

               
               
               Conread position:244-397
               
               
               Cow position:chr18:1954478-1954635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr18:24342955-24342797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr18:27388696-27388538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr18:35692965-35692810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):62, 34

               
               
               Conread position:244-397
               
               
               Cow position:chr18:51392532-51392685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):62, 115

               
               
               Conread position:244-398
               
               
               Cow position:chr18:19883642-19883485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):62, 34

               
               
               Conread position:244-398
               
               
               Cow position:chr18:19896340-19896498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:245-392
               
               
               Cow position:chr18:21768723-21768578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:245-397
               
               
               Cow position:chr18:7359852-7359699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):63, 10

               
               
               Conread position:245-397
               
               
               Cow position:chr18:37023442-37023596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):63, 8

               
               
               Conread position:247-371
               
               
               Cow position:chr18:50612423-50612550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:247-397
               
               
               Cow position:chr18:4556063-4556212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 8

               
               
               Conread position:247-398
               
               
               Cow position:chr18:4495779-4495933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 11

               
               
               Conread position:248-398
               
               
               Cow position:chr18:11233519-11233369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 125

               
               
               Conread position:248-398
               
               
               Cow position:chr18:32600160-32600005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:250-397
               
               
               Cow position:chr18:47417100-47416956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):123, 28

               
               
               Conread position:250-397
               
               
               Cow position:chr18:51675985-51676135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):25, 40

               
               
               Conread position:250-398
               
               
               Cow position:chr18:24266303-24266454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:251-398
               
               
               Cow position:chr18:19868157-19868305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):49, 116

               
               
               Conread position:252-366
               
               
               Cow position:chr18:27637595-27637478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-381
               
               
               Cow position:chr18:23821729-23821862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-383
               
               
               Cow position:chr18:56463628-56463762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):54, 75

               
               
               Conread position:252-392
               
               
               Cow position:chr18:39662881-39662738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:252-395
               
               
               Cow position:chr18:11754233-11754086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-395
               
               
               Cow position:chr18:43283654-43283800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:252-396
               
               
               Cow position:chr18:3211980-3211833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:252-396
               
               
               Cow position:chr18:7965332-7965187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr18:52251754-52251903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr18:2774036-2774185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 45

               
               
               Conread position:252-398
               
               
               Cow position:chr18:6005397-6005547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 37

               
               
               Conread position:252-398
               
               
               Cow position:chr18:16659328-16659479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr18:35874181-35874033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):56, 122

               
               
               Conread position:252-398
               
               
               Cow position:chr18:55692919-55692769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-399
               
               
               Cow position:chr18:23446959-23447108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):56, 22

               
               
               Conread position:253-371
               
               
               Cow position:chr18:10860997-10861113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):116, 20

               
               
               Conread position:253-397
               
               
               Cow position:chr18:21192313-21192457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:253-398
               
               
               Cow position:chr18:22120783-22120932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 7

               
               
               Conread position:253-398
               
               
               Cow position:chr18:47486145-47485997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):53, 36

               
               
               Conread position:254-384
               
               
               Cow position:chr18:19809583-19809715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):52, 12

               
               
               Conread position:254-397
               
               
               Cow position:chr18:4757930-4758078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:254-400
               
               
               Cow position:chr18:11657757-11657608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 87

               
               
               Conread position:256-392
               
               
               Cow position:chr18:11867438-11867296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:256-395
               
               
               Cow position:chr18:51405814-51405950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):117, 17

               
               
               Conread position:256-398
               
               
               Cow position:chr18:44909152-44909006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:257-398
               
               
               Cow position:chr18:20175099-20175241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:260-395
               
               
               Cow position:chr18:20174036-20174173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 30

               
               
               Conread position:260-396
               
               
               Cow position:chr18:5647908-5647768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr18:5632363-5632222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr18:24719408-24719267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr18:42427715-42427574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr18:51192645-51192786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr18:51643271-51643411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr18:51655948-51656088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:260-397
               
               
               Cow position:chr18:51691368-51691508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:260-397
               
               
               Cow position:chr18:56159556-56159416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):50, 62

               
               
               Conread position:262-397
               
               
               Cow position:chr18:50359425-50359286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:263-390
               
               
               Cow position:chr18:47410635-47410504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:263-397
               
               
               Cow position:chr18:1144094-1144229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 88

               
               
               Conread position:266-397
               
               
               Cow position:chr18:5078685-5078819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:267-397
               
               
               Cow position:chr18:10322895-10322760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:268-398
               
               
               Cow position:chr18:52855142-52855008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:272-392
               
               
               Cow position:chr18:40047418-40047539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 24

               
               
               Conread position:272-397
               
               
               Cow position:chr18:12584756-12584885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:273-397
               
               
               Cow position:chr18:4757490-4757616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:275-397
               
               
               Cow position:chr18:47525488-47525362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:275-398
               
               
               Cow position:chr18:14586391-14586517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 6

               
               
               Conread position:289-397
               
               
               Cow position:chr18:4182122-4182233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:289-397
               
               
               Cow position:chr18:14888357-14888247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 68

               
               
               Conread position:121-328
               
               
               Cow position:chr19:43498666-43498876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):50, 87

               
               
               Conread position:132-268
               
               
               Cow position:chr19:24664131-24664267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 93

               
               
               Conread position:136-244
               
               
               Cow position:chr19:25825905-25825799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:136-397
               
               
               Cow position:chr19:11424090-11424339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 59

               
               
               Conread position:137-391
               
               
               Cow position:chr19:33237396-33237156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):169, 27

               
               
               Conread position:137-395
               
               
               Cow position:chr19:20092772-20093016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):236, 10

               
               
               Conread position:141-395
               
               
               Cow position:chr19:35233445-35233675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):232, 23

               
               
               Conread position:142-387
               
               
               Cow position:chr19:9733338-9733580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):64, 21

               
               
               Conread position:144-268
               
               
               Cow position:chr19:47559166-47559041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:144-368
               
               
               Cow position:chr19:42778061-42777856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:144-371
               
               
               Cow position:chr19:43642578-43642791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):162, 28

               
               
               Conread position:144-373
               
               
               Cow position:chr19:54919605-54919848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:144-398
               
               
               Cow position:chr19:12036283-12036533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):157, 75

               
               
               Conread position:144-398
               
               
               Cow position:chr19:22438869-22438621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):229, 98

               
               
               Conread position:145-263
               
               
               Cow position:chr19:18344265-18344382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:156-396
               
               
               Cow position:chr19:30886606-30886373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):150, 47

               
               
               Conread position:179-397
               
               
               Cow position:chr19:19919262-19919485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 120

               
               
               Conread position:199-347
               
               
               Cow position:chr19:11754413-11754562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):107, 13

               
               
               Conread position:205-385
               
               
               Cow position:chr19:55175304-55175492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):10, 27

               
               
               Conread position:209-398
               
               
               Cow position:chr19:53840683-53840495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):97, 30

               
               
               Conread position:216-397
               
               
               Cow position:chr19:7675393-7675210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):90, 33

               
               
               Conread position:218-397
               
               
               Cow position:chr19:18921078-18921271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:220-396
               
               
               Cow position:chr19:53378854-53378679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:221-371
               
               
               Cow position:chr19:1553862-1553711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 23

               
               
               Conread position:223-397
               
               
               Cow position:chr19:39361297-39361116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):79, 23

               
               
               Conread position:223-398
               
               
               Cow position:chr19:31691187-31691008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:225-397
               
               
               Cow position:chr19:4800895-4800718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:228-401
               
               
               Cow position:chr19:43202841-43203017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):74, 68

               
               
               Conread position:229-392
               
               
               Cow position:chr19:39648928-39649095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:238-395
               
               
               Cow position:chr19:54915553-54915714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr19:22134018-22134173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 110

               
               
               Conread position:244-397
               
               
               Cow position:chr19:22449797-22449950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):28, 57

               
               
               Conread position:244-398
               
               
               Cow position:chr19:34757870-34758027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):62, 10

               
               
               Conread position:245-389
               
               
               Cow position:chr19:38717208-38717364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:245-391
               
               
               Cow position:chr19:43373171-43373021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:246-396
               
               
               Cow position:chr19:46094505-46094659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:246-397
               
               
               Cow position:chr19:6344204-6344050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):55, 76

               
               
               Conread position:246-397
               
               
               Cow position:chr19:42236159-42236004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:246-398
               
               
               Cow position:chr19:43647549-43647388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:247-361
               
               
               Cow position:chr19:51637170-51637053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:247-383
               
               
               Cow position:chr19:2042216-2042077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):18, 114

               
               
               Conread position:248-367
               
               
               Cow position:chr19:52568347-52568468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:248-380
               
               
               Cow position:chr19:15076071-15076207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:248-396
               
               
               Cow position:chr19:46300551-46300398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:249-397
               
               
               Cow position:chr19:10081201-10081051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):57, 26

               
               
               Conread position:250-392
               
               
               Cow position:chr19:40051266-40051412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:250-397
               
               
               Cow position:chr19:30007310-30007168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):123, 16

               
               
               Conread position:250-397
               
               
               Cow position:chr19:36845375-36845226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):58, 16

               
               
               Conread position:250-397
               
               
               Cow position:chr19:39254318-39254469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:250-398
               
               
               Cow position:chr19:25382560-25382712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-395
               
               
               Cow position:chr19:12698443-12698298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:252-395
               
               
               Cow position:chr19:34166491-34166349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 15

               
               
               Conread position:252-397
               
               
               Cow position:chr19:2220950-2221099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr19:8185327-8185179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:252-397
               
               
               Cow position:chr19:17354981-17354834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 42

               
               
               Conread position:252-397
               
               
               Cow position:chr19:20622779-20622630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr19:21817088-21816943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 99

               
               
               Conread position:252-397
               
               
               Cow position:chr19:30227645-30227496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr19:38021564-38021420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):121, 63

               
               
               Conread position:252-397
               
               
               Cow position:chr19:52750633-52750782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr19:5912835-5912981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 109

               
               
               Conread position:252-398
               
               
               Cow position:chr19:14253757-14253607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:256-384
               
               
               Cow position:chr19:52356372-52356241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:256-397
               
               
               Cow position:chr19:15362575-15362724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:256-397
               
               
               Cow position:chr19:22816896-22817031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:256-397
               
               
               Cow position:chr19:34819065-34819212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:256-397
               
               
               Cow position:chr19:39781641-39781496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:260-395
               
               
               Cow position:chr19:39613050-39613187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:260-397
               
               
               Cow position:chr19:21176626-21176765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:263-395
               
               
               Cow position:chr19:43292168-43292029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:263-397
               
               
               Cow position:chr19:25526398-25526260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:270-378
               
               
               Cow position:chr19:1978288-1978177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:278-398
               
               
               Cow position:chr19:30552116-30551992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:109-257
               
               
               Cow position:chr2:45466545-45466396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 98

               
               
               Conread position:121-395
               
               
               Cow position:chr2:47645322-47645039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):95, 240

               
               
               Conread position:121-397
               
               
               Cow position:chr2:64131666-64131411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):70, 27

               
               
               Conread position:122-291
               
               
               Cow position:chr2:23720177-23720345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):148, 13

               
               
               Conread position:122-398
               
               
               Cow position:chr2:13271153-13271431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):105, 9

               
               
               Conread position:125-377
               
               
               Cow position:chr2:41385638-41385883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):181, 95

               
               
               Conread position:128-371
               
               
               Cow position:chr2:73776374-73776619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):9, 101

               
               
               Conread position:135-395
               
               
               Cow position:chr2:12447349-12447607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):238, 32

               
               
               Conread position:136-232
               
               
               Cow position:chr2:76348650-76348553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:82
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:136-244
               
               
               Cow position:chr2:11840843-11840735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-244
               
               
               Cow position:chr2:81649286-81649179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:136-291
               
               
               Cow position:chr2:41525582-41525736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:136-336
               
               
               Cow position:chr2:67310868-67311073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):71, 49

               
               
               Conread position:136-348
               
               
               Cow position:chr2:84928418-84928192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:136-397
               
               
               Cow position:chr2:39544560-39544813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):169, 48

               
               
               Conread position:136-398
               
               
               Cow position:chr2:32416613-32416874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):163, 31

               
               
               Conread position:137-395
               
               
               Cow position:chr2:3437983-3438229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):176, 50

               
               
               Conread position:138-407
               
               
               Cow position:chr2:50368207-50367950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):170, 39

               
               
               Conread position:139-379
               
               
               Cow position:chr2:44021980-44021746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):163, 51

               
               
               Conread position:141-307
               
               
               Cow position:chr2:46132896-46133058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:141-397
               
               
               Cow position:chr2:34918365-34918120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):161, 78

               
               
               Conread position:143-386
               
               
               Cow position:chr2:47073442-47073187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:144-263
               
               
               Cow position:chr2:61406065-61406184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-349
               
               
               Cow position:chr2:6697258-6697466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):99, 27

               
               
               Conread position:144-371
               
               
               Cow position:chr2:19030895-19031124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):162, 101

               
               
               Conread position:144-381
               
               
               Cow position:chr2:2689988-2689757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):157, 73

               
               
               Conread position:144-390
               
               
               Cow position:chr2:46733705-46733937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):8, 60

               
               
               Conread position:144-397
               
               
               Cow position:chr2:9687325-9687585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):127, 138

               
               
               Conread position:144-397
               
               
               Cow position:chr2:20890271-20890526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):157, 98

               
               
               Conread position:144-397
               
               
               Cow position:chr2:77242116-77241855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):132, 27

               
               
               Conread position:144-397
               
               
               Cow position:chr2:81758281-81758022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):111, 214

               
               
               Conread position:144-398
               
               
               Cow position:chr2:24116888-24117120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):229, 62

               
               
               Conread position:144-398
               
               
               Cow position:chr2:72183270-72183505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):229, 75

               
               
               Conread position:144-398
               
               
               Cow position:chr2:79138490-79138238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):108, 81

               
               
               Conread position:145-322
               
               
               Cow position:chr2:13055280-13055105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):157, 73

               
               
               Conread position:145-325
               
               
               Cow position:chr2:81157850-81157665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):115, 26

               
               
               Conread position:146-270
               
               
               Cow position:chr2:46406837-46406714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:151-397
               
               
               Cow position:chr2:44216647-44216422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):222, 55

               
               
               Conread position:154-395
               
               
               Cow position:chr2:44081652-44081427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):151, 60

               
               
               Conread position:160-377
               
               
               Cow position:chr2:44032192-44032393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):148, 46

               
               
               Conread position:189-395
               
               
               Cow position:chr2:85339263-85339468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:199-495
               
               
               Cow position:chr2:45537000-45537295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):25, 8

               
               
               Conread position:212-397
               
               
               Cow position:chr2:62644768-62644575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:215-397
               
               
               Cow position:chr2:81388867-81388681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):40, 132

               
               
               Conread position:221-391
               
               
               Cow position:chr2:14626760-14626586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):24, 148

               
               
               Conread position:221-393
               
               
               Cow position:chr2:73353962-73353788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 141

               
               
               Conread position:221-397
               
               
               Cow position:chr2:40728515-40728338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 25

               
               
               Conread position:221-397
               
               
               Cow position:chr2:57802322-57802501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):80, 22

               
               
               Conread position:222-371
               
               
               Cow position:chr2:39525629-39525477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 41

               
               
               Conread position:224-392
               
               
               Cow position:chr2:48130786-48130612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:224-397
               
               
               Cow position:chr2:44005118-44004945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 55

               
               
               Conread position:225-371
               
               
               Cow position:chr2:52398474-52398331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:227-392
               
               
               Cow position:chr2:12332684-12332523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):146, 38

               
               
               Conread position:230-371
               
               
               Cow position:chr2:46190389-46190245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):26, 32

               
               
               Conread position:230-398
               
               
               Cow position:chr2:38918667-38918837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):64, 137

               
               
               Conread position:231-392
               
               
               Cow position:chr2:7383531-7383695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:235-397
               
               
               Cow position:chr2:46124551-46124712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):38, 25

               
               
               Conread position:236-399
               
               
               Cow position:chr2:61421015-61421181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):70, 162

               
               
               Conread position:238-396
               
               
               Cow position:chr2:53575549-53575383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):27, 143

               
               
               Conread position:240-397
               
               
               Cow position:chr2:70896184-70896022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:240-398
               
               
               Cow position:chr2:70915512-70915677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:241-397
               
               
               Cow position:chr2:12988732-12988579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):132, 48

               
               
               Conread position:241-398
               
               
               Cow position:chr2:49428528-49428368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):55, 11

               
               
               Conread position:242-397
               
               
               Cow position:chr2:39237558-39237401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):64, 38

               
               
               Conread position:244-371
               
               
               Cow position:chr2:38576335-38576465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-386
               
               
               Cow position:chr2:46383321-46383467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:244-392
               
               
               Cow position:chr2:63718273-63718420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 59

               
               
               Conread position:244-395
               
               
               Cow position:chr2:72407352-72407507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:244-396
               
               
               Cow position:chr2:13062071-13062229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:244-396
               
               
               Cow position:chr2:46293906-46294057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):128, 50

               
               
               Conread position:244-397
               
               
               Cow position:chr2:12839897-12840052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):66, 105

               
               
               Conread position:244-397
               
               
               Cow position:chr2:23147545-23147707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 124

               
               
               Conread position:244-397
               
               
               Cow position:chr2:39263632-39263478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):62, 109

               
               
               Conread position:244-397
               
               
               Cow position:chr2:64773529-64773373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):62, 30

               
               
               Conread position:244-398
               
               
               Cow position:chr2:22042686-22042523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 123

               
               
               Conread position:244-398
               
               
               Cow position:chr2:72309866-72310024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-398
               
               
               Cow position:chr2:76562256-76562093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:246-367
               
               
               Cow position:chr2:46110911-46111036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:246-392
               
               
               Cow position:chr2:58135251-58135399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):59, 29

               
               
               Conread position:246-397
               
               
               Cow position:chr2:5130312-5130466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):63, 20

               
               
               Conread position:247-374
               
               
               Cow position:chr2:42266717-42266846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 20

               
               
               Conread position:247-397
               
               
               Cow position:chr2:16505336-16505488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:247-397
               
               
               Cow position:chr2:44025519-44025368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):59, 106

               
               
               Conread position:247-398
               
               
               Cow position:chr2:7194350-7194198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):63, 104

               
               
               Conread position:248-377
               
               
               Cow position:chr2:46300750-46300619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):60, 25

               
               
               Conread position:248-393
               
               
               Cow position:chr2:30954457-30954605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):58, 30

               
               
               Conread position:248-397
               
               
               Cow position:chr2:67480116-67479962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:248-427
               
               
               Cow position:chr2:39418948-39419134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):60, 159

               
               
               Conread position:249-388
               
               
               Cow position:chr2:67386334-67386476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 30

               
               
               Conread position:249-392
               
               
               Cow position:chr2:12958551-12958405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):52, 75

               
               
               Conread position:249-397
               
               
               Cow position:chr2:28303459-28303307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:249-397
               
               
               Cow position:chr2:36017274-36017421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):59, 112

               
               
               Conread position:249-398
               
               
               Cow position:chr2:71486916-71486765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 29

               
               
               Conread position:250-383
               
               
               Cow position:chr2:39363141-39363004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:250-383
               
               
               Cow position:chr2:39642888-39642754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):56, 28

               
               
               Conread position:250-397
               
               
               Cow position:chr2:17328888-17328738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:250-397
               
               
               Cow position:chr2:32048618-32048468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:250-397
               
               
               Cow position:chr2:84970574-84970726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:250-398
               
               
               Cow position:chr2:15219252-15219100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:250-398
               
               
               Cow position:chr2:38273687-38273537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:251-381
               
               
               Cow position:chr2:22370810-22370941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):55, 12

               
               
               Conread position:252-359
               
               
               Cow position:chr2:68328718-68328826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:252-371
               
               
               Cow position:chr2:49467766-49467644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:252-383
               
               
               Cow position:chr2:36117386-36117251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-391
               
               
               Cow position:chr2:29394872-29395015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-392
               
               
               Cow position:chr2:23713008-23712864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:252-392
               
               
               Cow position:chr2:46053607-46053463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-395
               
               
               Cow position:chr2:36963659-36963517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 122

               
               
               Conread position:252-395
               
               
               Cow position:chr2:46317007-46316862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 120

               
               
               Conread position:252-395
               
               
               Cow position:chr2:69579542-69579689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-396
               
               
               Cow position:chr2:16669604-16669457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:252-396
               
               
               Cow position:chr2:54968143-54967997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):63, 26

               
               
               Conread position:252-397
               
               
               Cow position:chr2:6039149-6039001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr2:17940151-17940298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):56, 103

               
               
               Conread position:252-397
               
               
               Cow position:chr2:38837380-38837529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr2:39095491-39095344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):56, 42

               
               
               Conread position:252-397
               
               
               Cow position:chr2:44022669-44022818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr2:46014903-46014754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr2:53430852-53430707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):121, 64

               
               
               Conread position:252-397
               
               
               Cow position:chr2:56846884-56846736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):56, 115

               
               
               Conread position:252-398
               
               
               Cow position:chr2:3739708-3739858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr2:13369791-13369641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr2:14826413-14826263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr2:29160040-29159893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:252-398
               
               
               Cow position:chr2:31355834-31355684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr2:32988704-32988552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr2:49716952-49717101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr2:50566071-50565921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr2:72528096-72527947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:253-398
               
               
               Cow position:chr2:78360542-78360396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:254-386
               
               
               Cow position:chr2:53652985-53652850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:254-398
               
               
               Cow position:chr2:32264256-32264405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:254-398
               
               
               Cow position:chr2:54700591-54700443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:254-398
               
               
               Cow position:chr2:79837591-79837739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:255-397
               
               
               Cow position:chr2:40410280-40410133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:255-397
               
               
               Cow position:chr2:42183506-42183360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:255-397
               
               
               Cow position:chr2:55632907-55632764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:256-384
               
               
               Cow position:chr2:21950108-21949977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:258-397
               
               
               Cow position:chr2:76861325-76861468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-396
               
               
               Cow position:chr2:39659957-39660097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr2:19211928-19212067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr2:46126007-46126147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):34, 90

               
               
               Conread position:260-398
               
               
               Cow position:chr2:20900334-20900476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:261-391
               
               
               Cow position:chr2:40058611-40058745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:261-395
               
               
               Cow position:chr2:69823717-69823579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):45, 5

               
               
               Conread position:261-397
               
               
               Cow position:chr2:68870817-68870682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:262-398
               
               
               Cow position:chr2:70847135-70847275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:266-392
               
               
               Cow position:chr2:80963526-80963653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 94

               
               
               Conread position:267-393
               
               
               Cow position:chr2:76110517-76110388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:272-380
               
               
               Cow position:chr2:7478825-7478936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 62

               
               
               Conread position:272-391
               
               
               Cow position:chr2:26102884-26102761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:272-395
               
               
               Cow position:chr2:7524015-7524142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:272-397
               
               
               Cow position:chr2:2827858-2827731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):34, 51

               
               
               Conread position:272-397
               
               
               Cow position:chr2:46230646-46230775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:273-398
               
               
               Cow position:chr2:76313753-76313881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:276-398
               
               
               Cow position:chr2:26438611-26438737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):19, 88

               
               
               Conread position:283-395
               
               
               Cow position:chr2:22113591-22113708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:289-397
               
               
               Cow position:chr2:70945504-70945392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:131-397
               
               
               Cow position:chr20:34777478-34777210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):174, 39

               
               
               Conread position:135-395
               
               
               Cow position:chr20:7709504-7709749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):171, 67

               
               
               Conread position:135-395
               
               
               Cow position:chr20:33438705-33438948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):13, 79

               
               
               Conread position:136-272
               
               
               Cow position:chr20:35447662-35447801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:136-347
               
               
               Cow position:chr20:24522590-24522378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):166, 86

               
               
               Conread position:136-395
               
               
               Cow position:chr20:20056209-20056455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):233, 68

               
               
               Conread position:138-397
               
               
               Cow position:chr20:9537412-9537169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 99

               
               
               Conread position:143-395
               
               
               Cow position:chr20:13944039-13943797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):108, 59

               
               
               Conread position:144-266
               
               
               Cow position:chr20:30939302-30939178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:144-334
               
               
               Cow position:chr20:18100864-18100677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 49

               
               
               Conread position:144-398
               
               
               Cow position:chr20:31798926-31799174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):162, 92

               
               
               Conread position:145-397
               
               
               Cow position:chr20:6890980-6890744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):227, 89

               
               
               Conread position:148-354
               
               
               Cow position:chr20:36023123-36023326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):157, 71

               
               
               Conread position:153-392
               
               
               Cow position:chr20:17846229-17845996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):27, 97

               
               
               Conread position:172-398
               
               
               Cow position:chr20:13983620-13983385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:177-389
               
               
               Cow position:chr20:32988573-32988792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):34, 143

               
               
               Conread position:193-392
               
               
               Cow position:chr20:14100197-14100398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):108, 168

               
               
               Conread position:200-367
               
               
               Cow position:chr20:15846986-15846816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):25, 63

               
               
               Conread position:200-396
               
               
               Cow position:chr20:16405840-16405643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):67, 6

               
               
               Conread position:206-367
               
               
               Cow position:chr20:41274671-41274837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:212-396
               
               
               Cow position:chr20:35591432-35591618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):93, 63

               
               
               Conread position:216-367
               
               
               Cow position:chr20:26059013-26059169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:216-392
               
               
               Cow position:chr20:11444292-11444114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 139

               
               
               Conread position:222-381
               
               
               Cow position:chr20:7622778-7622937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):80, 53

               
               
               Conread position:225-397
               
               
               Cow position:chr20:35460334-35460512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):58, 102

               
               
               Conread position:238-396
               
               
               Cow position:chr20:580727-580889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:241-398
               
               
               Cow position:chr20:34202826-34202663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:243-395
               
               
               Cow position:chr20:35208017-35208174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):54, 31

               
               
               Conread position:244-384
               
               
               Cow position:chr20:9730180-9730041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):33, 72

               
               
               Conread position:244-395
               
               
               Cow position:chr20:23870632-23870786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr20:12995816-12995975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 88

               
               
               Conread position:244-398
               
               
               Cow position:chr20:36779543-36779700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:245-386
               
               
               Cow position:chr20:2823056-2822913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):61, 136

               
               
               Conread position:245-397
               
               
               Cow position:chr20:11481949-11482104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:246-397
               
               
               Cow position:chr20:40782143-40781991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):60, 13

               
               
               Conread position:247-395
               
               
               Cow position:chr20:20739103-20739252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 138

               
               
               Conread position:247-397
               
               
               Cow position:chr20:16548095-16548248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):59, 31

               
               
               Conread position:247-397
               
               
               Cow position:chr20:23506290-23506440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):126, 11

               
               
               Conread position:248-372
               
               
               Cow position:chr20:5078454-5078327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:248-390
               
               
               Cow position:chr20:28594470-28594323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):58, 110

               
               
               Conread position:248-391
               
               
               Cow position:chr20:23936002-23936148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 76

               
               
               Conread position:248-397
               
               
               Cow position:chr20:7416984-7417137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:249-382
               
               
               Cow position:chr20:2148011-2148147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):57, 81

               
               
               Conread position:249-395
               
               
               Cow position:chr20:6096313-6096463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:249-397
               
               
               Cow position:chr20:40158082-40157930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:250-391
               
               
               Cow position:chr20:34221658-34221515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:250-397
               
               
               Cow position:chr20:4945074-4945221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:250-397
               
               
               Cow position:chr20:12126125-12126274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:250-397
               
               
               Cow position:chr20:29845231-29845081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):56, 46

               
               
               Conread position:252-365
               
               
               Cow position:chr20:17544803-17544687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-395
               
               
               Cow position:chr20:6054330-6054477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:252-395
               
               
               Cow position:chr20:10200525-10200378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:252-396
               
               
               Cow position:chr20:24712020-24711871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-396
               
               
               Cow position:chr20:34097774-34097925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr20:20934558-20934702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 23

               
               
               Conread position:252-397
               
               
               Cow position:chr20:39016693-39016844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr20:6248422-6248572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr20:39962754-39962604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:253-397
               
               
               Cow position:chr20:354723-354867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 100

               
               
               Conread position:253-397
               
               
               Cow position:chr20:19751483-19751337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:253-397
               
               
               Cow position:chr20:23590571-23590717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):53, 119

               
               
               Conread position:254-397
               
               
               Cow position:chr20:3141750-3141604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):56, 35

               
               
               Conread position:254-397
               
               
               Cow position:chr20:14283099-14282950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:255-397
               
               
               Cow position:chr20:22485036-22484892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):19, 5

               
               
               Conread position:255-398
               
               
               Cow position:chr20:38925674-38925822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:256-384
               
               
               Cow position:chr20:35442107-35442239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:256-392
               
               
               Cow position:chr20:11359458-11359596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:256-397
               
               
               Cow position:chr20:16941115-16941257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):50, 10

               
               
               Conread position:257-397
               
               
               Cow position:chr20:20967495-20967351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:257-397
               
               
               Cow position:chr20:21372482-21372338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:257-397
               
               
               Cow position:chr20:35727756-35727900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:258-397
               
               
               Cow position:chr20:361017-361156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):48, 82

               
               
               Conread position:258-397
               
               
               Cow position:chr20:21345606-21345459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-386
               
               
               Cow position:chr20:31845114-31845244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-390
               
               
               Cow position:chr20:39415921-39415787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr20:13652196-13652337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:263-397
               
               
               Cow position:chr20:11008338-11008200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:264-401
               
               
               Cow position:chr20:4332300-4332156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 10

               
               
               Conread position:267-385
               
               
               Cow position:chr20:2316261-2316383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:267-397
               
               
               Cow position:chr20:5703636-5703501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:270-397
               
               
               Cow position:chr20:16492234-16492102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:272-393
               
               
               Cow position:chr20:22959189-22959313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 50

               
               
               Conread position:272-395
               
               
               Cow position:chr20:17251876-17251750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):35, 100

               
               
               Conread position:275-397
               
               
               Cow position:chr20:31323943-31323818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):31, 78

               
               
               Conread position:278-397
               
               
               Cow position:chr20:9433740-9433617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:281-401
               
               
               Cow position:chr20:5950493-5950617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:135-396
               
               
               Cow position:chr21:26567453-26567725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:136-371
               
               
               Cow position:chr21:30024371-30024593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:136-397
               
               
               Cow position:chr21:46470488-46470237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):166, 42

               
               
               Conread position:137-244
               
               
               Cow position:chr21:48521277-48521170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-271
               
               
               Cow position:chr21:2926874-2927007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):127, 85

               
               
               Conread position:138-382
               
               
               Cow position:chr21:12200416-12200168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):67, 236

               
               
               Conread position:138-397
               
               
               Cow position:chr21:30120012-30119745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):102, 27

               
               
               Conread position:144-345
               
               
               Cow position:chr21:19927695-19927489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):100, 27

               
               
               Conread position:144-392
               
               
               Cow position:chr21:5130055-5130312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:144-398
               
               
               Cow position:chr21:24795725-24795984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):155, 25

               
               
               Conread position:144-400
               
               
               Cow position:chr21:39401902-39401643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):84, 99

               
               
               Conread position:145-367
               
               
               Cow position:chr21:7268579-7268800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):205, 0

               
               
               Conread position:145-397
               
               
               Cow position:chr21:17265699-17265950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):157, 26

               
               
               Conread position:147-392
               
               
               Cow position:chr21:265916-265680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):159, 64

               
               
               Conread position:148-393
               
               
               Cow position:chr21:28823923-28824171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):142, 21

               
               
               Conread position:148-397
               
               
               Cow position:chr21:44672030-44671796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):225, 98

               
               
               Conread position:178-392
               
               
               Cow position:chr21:33563283-33563064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):28, 166

               
               
               Conread position:200-357
               
               
               Cow position:chr21:31993078-31992920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 73

               
               
               Conread position:205-386
               
               
               Cow position:chr21:10633394-10633575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):107, 147

               
               
               Conread position:205-398
               
               
               Cow position:chr21:5341842-5342044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:212-391
               
               
               Cow position:chr21:7493030-7493210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):30, 163

               
               
               Conread position:213-397
               
               
               Cow position:chr21:7581666-7581854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:219-397
               
               
               Cow position:chr21:7681331-7681150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):30, 61

               
               
               Conread position:220-398
               
               
               Cow position:chr21:868699-868874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):88, 24

               
               
               Conread position:224-397
               
               
               Cow position:chr21:10538029-10538204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):82, 42

               
               
               Conread position:224-400
               
               
               Cow position:chr21:30249982-30250154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):85, 51

               
               
               Conread position:225-397
               
               
               Cow position:chr21:396096-395919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):29, 149

               
               
               Conread position:232-379
               
               
               Cow position:chr21:37344881-37345034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 31

               
               
               Conread position:239-397
               
               
               Cow position:chr21:26245127-26244965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:241-399
               
               
               Cow position:chr21:37928859-37928698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 11

               
               
               Conread position:242-398
               
               
               Cow position:chr21:471884-471726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):64, 86

               
               
               Conread position:244-379
               
               
               Cow position:chr21:25159381-25159243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):28, 132

               
               
               Conread position:244-389
               
               
               Cow position:chr21:5406024-5405875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:244-393
               
               
               Cow position:chr21:30256066-30256214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):57, 92

               
               
               Conread position:244-395
               
               
               Cow position:chr21:33928-33772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:244-395
               
               
               Cow position:chr21:19148313-19148163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):128, 30

               
               
               Conread position:244-397
               
               
               Cow position:chr21:13164067-13163910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr21:13584857-13585008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 37

               
               
               Conread position:244-397
               
               
               Cow position:chr21:24642722-24642572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):28, 68

               
               
               Conread position:244-397
               
               
               Cow position:chr21:36795811-36795654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr21:41610378-41610218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:244-398
               
               
               Cow position:chr21:12739285-12739130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:245-371
               
               
               Cow position:chr21:37361034-37361164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:245-392
               
               
               Cow position:chr21:44592003-44592153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):61, 36

               
               
               Conread position:245-396
               
               
               Cow position:chr21:10004679-10004833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):63, 99

               
               
               Conread position:245-397
               
               
               Cow position:chr21:15584214-15584368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):60, 36

               
               
               Conread position:245-397
               
               
               Cow position:chr21:36910136-36909982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 30

               
               
               Conread position:245-397
               
               
               Cow position:chr21:42562836-42562683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 110

               
               
               Conread position:246-392
               
               
               Cow position:chr21:20318716-20318569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 107

               
               
               Conread position:246-397
               
               
               Cow position:chr21:28237502-28237655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):60, 96

               
               
               Conread position:247-392
               
               
               Cow position:chr21:3818413-3818265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:247-397
               
               
               Cow position:chr21:45473554-45473707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):59, 27

               
               
               Conread position:248-397
               
               
               Cow position:chr21:47244-47091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:250-367
               
               
               Cow position:chr21:27744226-27744107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 33

               
               
               Conread position:250-371
               
               
               Cow position:chr21:21479102-21479223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 28

               
               
               Conread position:250-371
               
               
               Cow position:chr21:43265193-43265317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:250-397
               
               
               Cow position:chr21:41041145-41040995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 41

               
               
               Conread position:252-371
               
               
               Cow position:chr21:5214549-5214426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:252-383
               
               
               Cow position:chr21:17184117-17183982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-390
               
               
               Cow position:chr21:42007262-42007403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-392
               
               
               Cow position:chr21:18568440-18568583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:252-395
               
               
               Cow position:chr21:20153154-20153009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:252-396
               
               
               Cow position:chr21:8545823-8545966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 119

               
               
               Conread position:252-396
               
               
               Cow position:chr21:30231499-30231642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):121, 59

               
               
               Conread position:252-397
               
               
               Cow position:chr21:7377726-7377875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr21:10264232-10264084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr21:32339540-32339689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr21:14452434-14452284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr21:18059762-18059911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr21:27677680-27677532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 99

               
               
               Conread position:252-398
               
               
               Cow position:chr21:44251643-44251793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:252-458
               
               
               Cow position:chr21:13225915-13225701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):56, 155

               
               
               Conread position:253-395
               
               
               Cow position:chr21:21169297-21169439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 117

               
               
               Conread position:253-398
               
               
               Cow position:chr21:13842689-13842539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:253-398
               
               
               Cow position:chr21:21686614-21686468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):57, 111

               
               
               Conread position:254-371
               
               
               Cow position:chr21:4108973-4108853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:254-379
               
               
               Cow position:chr21:29418766-29418639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):54, 106

               
               
               Conread position:254-391
               
               
               Cow position:chr21:8430902-8431043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:254-392
               
               
               Cow position:chr21:3585171-3585312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 24

               
               
               Conread position:254-392
               
               
               Cow position:chr21:40475698-40475555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:254-397
               
               
               Cow position:chr21:9416447-9416301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):52, 35

               
               
               Conread position:254-397
               
               
               Cow position:chr21:36763259-36763112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:254-398
               
               
               Cow position:chr21:25345059-25344911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:255-389
               
               
               Cow position:chr21:48482333-48482469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 127

               
               
               Conread position:255-397
               
               
               Cow position:chr21:4281683-4281824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):118, 53

               
               
               Conread position:255-397
               
               
               Cow position:chr21:31159594-31159453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 86

               
               
               Conread position:257-397
               
               
               Cow position:chr21:20160871-20160727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:257-397
               
               
               Cow position:chr21:29978564-29978709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:257-397
               
               
               Cow position:chr21:41598006-41597862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:257-398
               
               
               Cow position:chr21:938214-938071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):49, 118

               
               
               Conread position:258-396
               
               
               Cow position:chr21:38720443-38720302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:260-387
               
               
               Cow position:chr21:42017411-42017540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 115

               
               
               Conread position:260-397
               
               
               Cow position:chr21:7768630-7768489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr21:27863322-27863462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 36

               
               
               Conread position:260-397
               
               
               Cow position:chr21:45970982-45971121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):50, 113

               
               
               Conread position:260-398
               
               
               Cow position:chr21:25628722-25628860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:261-392
               
               
               Cow position:chr21:23587072-23586938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:261-398
               
               
               Cow position:chr21:34151772-34151636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):112, 40

               
               
               Conread position:263-392
               
               
               Cow position:chr21:23321889-23322022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:263-397
               
               
               Cow position:chr21:28244659-28244522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:264-398
               
               
               Cow position:chr21:9334676-9334538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):22, 85

               
               
               Conread position:270-398
               
               
               Cow position:chr21:5427120-5426990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:272-397
               
               
               Cow position:chr21:713123-712993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:272-397
               
               
               Cow position:chr21:7584030-7583901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:272-397
               
               
               Cow position:chr21:10001255-10001126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 78

               
               
               Conread position:272-397
               
               
               Cow position:chr21:30835543-30835417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):32, 107

               
               
               Conread position:275-426
               
               
               Cow position:chr21:6736012-6736168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 132

               
               
               Conread position:283-397
               
               
               Cow position:chr21:35647659-35647777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:111-395
               
               
               Cow position:chr22:17814493-17814219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):190, 20

               
               
               Conread position:126-371
               
               
               Cow position:chr22:31309126-31308895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):22, 91

               
               
               Conread position:136-232
               
               
               Cow position:chr22:16621392-16621296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:81
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-312
               
               
               Cow position:chr22:1602526-1602342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):98, 161

               
               
               Conread position:136-333
               
               
               Cow position:chr22:26669412-26669206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):90, 58

               
               
               Conread position:136-381
               
               
               Cow position:chr22:6655526-6655762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):166, 69

               
               
               Conread position:136-396
               
               
               Cow position:chr22:27328655-27328907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):170, 100

               
               
               Conread position:136-397
               
               
               Cow position:chr22:13841373-13841124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):170, 88

               
               
               Conread position:136-400
               
               
               Cow position:chr22:26706571-26706828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):198, 83

               
               
               Conread position:137-252
               
               
               Cow position:chr22:1975819-1975705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:137-391
               
               
               Cow position:chr22:13878401-13878171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):165, 97

               
               
               Conread position:138-270
               
               
               Cow position:chr22:30861646-30861776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:138-371
               
               
               Cow position:chr22:2516676-2516896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):168, 29

               
               
               Conread position:138-387
               
               
               Cow position:chr22:26490720-26490496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:138-397
               
               
               Cow position:chr22:17294698-17294952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):163, 81

               
               
               Conread position:138-397
               
               
               Cow position:chr22:27835768-27835519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):235, 90

               
               
               Conread position:139-398
               
               
               Cow position:chr22:32642923-32642666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):190, 0

               
               
               Conread position:141-395
               
               
               Cow position:chr22:3965432-3965172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:143-266
               
               
               Cow position:chr22:12867891-12868017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr22:14815875-14816081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):162, 62

               
               
               Conread position:144-367
               
               
               Cow position:chr22:34606826-34606606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):162, 41

               
               
               Conread position:144-383
               
               
               Cow position:chr22:3997990-3997751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):162, 60

               
               
               Conread position:144-397
               
               
               Cow position:chr22:22155829-22155589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):155, 27

               
               
               Conread position:144-397
               
               
               Cow position:chr22:23176204-23176457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 88

               
               
               Conread position:144-398
               
               
               Cow position:chr22:21235204-21235448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):229, 89

               
               
               Conread position:145-279
               
               
               Cow position:chr22:10562254-10562118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:148-372
               
               
               Cow position:chr22:26107348-26107132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):157, 71

               
               
               Conread position:161-397
               
               
               Cow position:chr22:10533802-10533582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):147, 73

               
               
               Conread position:169-396
               
               
               Cow position:chr22:8115871-8116103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:199-397
               
               
               Cow position:chr22:31154147-31153937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:200-353
               
               
               Cow position:chr22:13327077-13326923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):100, 28

               
               
               Conread position:205-391
               
               
               Cow position:chr22:32895398-32895210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):9, 77

               
               
               Conread position:207-387
               
               
               Cow position:chr22:6326621-6326438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):99, 47

               
               
               Conread position:208-398
               
               
               Cow position:chr22:6701371-6701561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:210-397
               
               
               Cow position:chr22:29842532-29842720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:221-397
               
               
               Cow position:chr22:16845241-16845420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 22

               
               
               Conread position:226-397
               
               
               Cow position:chr22:21530200-21530376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:232-396
               
               
               Cow position:chr22:22606383-22606210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 155

               
               
               Conread position:233-397
               
               
               Cow position:chr22:26339904-26339738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 13

               
               
               Conread position:238-392
               
               
               Cow position:chr22:28704331-28704173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:240-397
               
               
               Cow position:chr22:2502969-2502810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:240-397
               
               
               Cow position:chr22:28665426-28665267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):68, 11

               
               
               Conread position:241-395
               
               
               Cow position:chr22:534641-534485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 15

               
               
               Conread position:241-398
               
               
               Cow position:chr22:33447938-33448097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):61, 7

               
               
               Conread position:241-398
               
               
               Cow position:chr22:39446434-39446275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):61, 11

               
               
               Conread position:242-396
               
               
               Cow position:chr22:20847000-20846839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:242-396
               
               
               Cow position:chr22:24610954-24611107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):74, 10

               
               
               Conread position:244-369
               
               
               Cow position:chr22:16058115-16057988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:244-387
               
               
               Cow position:chr22:16621322-16621170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:244-388
               
               
               Cow position:chr22:10371767-10371624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):129, 33

               
               
               Conread position:244-389
               
               
               Cow position:chr22:25236999-25237149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr22:4535188-4535341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 51

               
               
               Conread position:244-397
               
               
               Cow position:chr22:10752400-10752558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr22:16044275-16044432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr22:44180735-44180577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:245-393
               
               
               Cow position:chr22:27275602-27275450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:245-397
               
               
               Cow position:chr22:24542495-24542346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:245-397
               
               
               Cow position:chr22:27274560-27274714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 146

               
               
               Conread position:245-397
               
               
               Cow position:chr22:43596197-43596353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:245-398
               
               
               Cow position:chr22:35161212-35161363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):128, 9

               
               
               Conread position:246-382
               
               
               Cow position:chr22:43573079-43572942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):66, 19

               
               
               Conread position:246-397
               
               
               Cow position:chr22:40120743-40120892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):127, 8

               
               
               Conread position:247-392
               
               
               Cow position:chr22:23400828-23400679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 19

               
               
               Conread position:247-397
               
               
               Cow position:chr22:7832217-7832370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 31

               
               
               Conread position:247-397
               
               
               Cow position:chr22:22223323-22223171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:247-397
               
               
               Cow position:chr22:28120862-28120704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:247-398
               
               
               Cow position:chr22:24032077-24032232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:247-398
               
               
               Cow position:chr22:26267985-26267833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):57, 127

               
               
               Conread position:248-391
               
               
               Cow position:chr22:38977974-38977831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:248-397
               
               
               Cow position:chr22:12188344-12188496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):60, 144

               
               
               Conread position:248-397
               
               
               Cow position:chr22:12195430-12195583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 145

               
               
               Conread position:249-396
               
               
               Cow position:chr22:1106203-1106052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:249-397
               
               
               Cow position:chr22:18967025-18967174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):57, 126

               
               
               Conread position:249-397
               
               
               Cow position:chr22:34726799-34726651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:250-395
               
               
               Cow position:chr22:47562841-47562689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:250-397
               
               
               Cow position:chr22:47555983-47555835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):56, 125

               
               
               Conread position:250-398
               
               
               Cow position:chr22:5290985-5290833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:250-398
               
               
               Cow position:chr22:39602415-39602265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):58, 29

               
               
               Conread position:251-398
               
               
               Cow position:chr22:25846188-25846339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:252-392
               
               
               Cow position:chr22:18933581-18933727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-392
               
               
               Cow position:chr22:34616439-34616295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:252-393
               
               
               Cow position:chr22:8331131-8330986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-394
               
               
               Cow position:chr22:10609489-10609345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr22:1849205-1849058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:252-397
               
               
               Cow position:chr22:5712715-5712572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 23

               
               
               Conread position:252-397
               
               
               Cow position:chr22:6754133-6754283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr22:9372654-9372505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr22:12389232-12389083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr22:12829478-12829628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr22:13866798-13866648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr22:15024979-15025126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 9

               
               
               Conread position:252-397
               
               
               Cow position:chr22:23126210-23126359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr22:30643000-30643150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr22:32661644-32661494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):13, 77

               
               
               Conread position:252-398
               
               
               Cow position:chr22:4736156-4736006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr22:9544257-9544407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr22:11697062-11697211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 116

               
               
               Conread position:252-398
               
               
               Cow position:chr22:14488068-14487918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr22:17198271-17198121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr22:18196642-18196494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 42

               
               
               Conread position:252-398
               
               
               Cow position:chr22:23265519-23265669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr22:25254304-25254155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 8

               
               
               Conread position:252-398
               
               
               Cow position:chr22:27907746-27907896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr22:32514426-32514274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:252-403
               
               
               Cow position:chr22:30606989-30606834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:253-383
               
               
               Cow position:chr22:44684617-44684487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 80

               
               
               Conread position:253-397
               
               
               Cow position:chr22:2627711-2627560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:253-397
               
               
               Cow position:chr22:5595679-5595825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):55, 97

               
               
               Conread position:253-398
               
               
               Cow position:chr22:43704738-43704882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):120, 64

               
               
               Conread position:253-399
               
               
               Cow position:chr22:3301207-3301357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:254-392
               
               
               Cow position:chr22:22860781-22860922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):50, 105

               
               
               Conread position:254-397
               
               
               Cow position:chr22:4156686-4156833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:254-397
               
               
               Cow position:chr22:6096886-6097033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:254-397
               
               
               Cow position:chr22:12678291-12678438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:254-397
               
               
               Cow position:chr22:15490785-15490637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:255-387
               
               
               Cow position:chr22:22023033-22022897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 125

               
               
               Conread position:255-396
               
               
               Cow position:chr22:18847834-18847976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 36

               
               
               Conread position:256-388
               
               
               Cow position:chr22:33399359-33399497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:256-397
               
               
               Cow position:chr22:4075757-4075903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:256-397
               
               
               Cow position:chr22:10553556-10553701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:256-397
               
               
               Cow position:chr22:11130999-11130854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:256-397
               
               
               Cow position:chr22:15737363-15737218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:256-397
               
               
               Cow position:chr22:16724557-16724703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:257-397
               
               
               Cow position:chr22:45505877-45506023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-371
               
               
               Cow position:chr22:45788731-45788621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:260-381
               
               
               Cow position:chr22:1830173-1830047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-392
               
               
               Cow position:chr22:2912465-2912597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 92

               
               
               Conread position:260-396
               
               
               Cow position:chr22:25540124-25539984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr22:2644053-2643914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 115

               
               
               Conread position:260-397
               
               
               Cow position:chr22:12967945-12968085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:260-397
               
               
               Cow position:chr22:23750772-23750910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 91

               
               
               Conread position:260-398
               
               
               Cow position:chr22:16806714-16806578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):112, 50

               
               
               Conread position:260-399
               
               
               Cow position:chr22:12313549-12313407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):48, 69

               
               
               Conread position:261-395
               
               
               Cow position:chr22:41854031-41853891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:261-397
               
               
               Cow position:chr22:10286094-10285952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:263-389
               
               
               Cow position:chr22:16346518-16346388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:263-391
               
               
               Cow position:chr22:10919733-10919862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:263-395
               
               
               Cow position:chr22:21746765-21746631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:263-397
               
               
               Cow position:chr22:23398282-23398420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:263-398
               
               
               Cow position:chr22:1326540-1326404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):45, 34

               
               
               Conread position:266-397
               
               
               Cow position:chr22:12749782-12749917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:266-398
               
               
               Cow position:chr22:2876679-2876815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:268-397
               
               
               Cow position:chr22:25943591-25943459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):40, 10

               
               
               Conread position:268-398
               
               
               Cow position:chr22:11344625-11344493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):38, 21

               
               
               Conread position:271-398
               
               
               Cow position:chr22:23857160-23857030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):34, 127

               
               
               Conread position:272-397
               
               
               Cow position:chr22:34712838-34712710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:273-396
               
               
               Cow position:chr22:8287295-8287172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 78

               
               
               Conread position:274-398
               
               
               Cow position:chr22:4656932-4657060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:275-397
               
               
               Cow position:chr22:4310263-4310387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 105

               
               
               Conread position:275-397
               
               
               Cow position:chr22:23372755-23372880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:275-398
               
               
               Cow position:chr22:16533182-16533057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:278-388
               
               
               Cow position:chr22:644663-644773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 11

               
               
               Conread position:278-397
               
               
               Cow position:chr22:27740997-27740876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 97

               
               
               Conread position:287-398
               
               
               Cow position:chr22:29344976-29344862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:121-395
               
               
               Cow position:chr23:20002502-20002249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):252, 24

               
               
               Conread position:136-254
               
               
               Cow position:chr23:30661946-30662064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-371
               
               
               Cow position:chr23:1503820-1503588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):170, 58

               
               
               Conread position:136-397
               
               
               Cow position:chr23:1768057-1767818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):237, 59

               
               
               Conread position:136-397
               
               
               Cow position:chr23:4967067-4966811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):170, 11

               
               
               Conread position:136-397
               
               
               Cow position:chr23:18402057-18402300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):170, 35

               
               
               Conread position:137-274
               
               
               Cow position:chr23:4578829-4578968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:138-379
               
               
               Cow position:chr23:31299448-31299181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:138-397
               
               
               Cow position:chr23:38502879-38503116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):219, 68

               
               
               Conread position:142-265
               
               
               Cow position:chr23:25379187-25379064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-301
               
               
               Cow position:chr23:6565014-6565166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:144-339
               
               
               Cow position:chr23:18829254-18829451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):77, 132

               
               
               Conread position:144-367
               
               
               Cow position:chr23:12602237-12602454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):160, 61

               
               
               Conread position:144-391
               
               
               Cow position:chr23:20434817-20435069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):67, 88

               
               
               Conread position:144-392
               
               
               Cow position:chr23:24479725-24479967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):229, 98

               
               
               Conread position:144-398
               
               
               Cow position:chr23:4916919-4916673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:148-366
               
               
               Cow position:chr23:14739705-14739470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:149-370
               
               
               Cow position:chr23:5174807-5174558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:152-360
               
               
               Cow position:chr23:5386841-5387063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:176-397
               
               
               Cow position:chr23:18787066-18787294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 72

               
               
               Conread position:198-387
               
               
               Cow position:chr23:38845788-38845598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):110, 45

               
               
               Conread position:204-397
               
               
               Cow position:chr23:1742539-1742347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):102, 47

               
               
               Conread position:208-387
               
               
               Cow position:chr23:32546091-32546265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):100, 23

               
               
               Conread position:222-397
               
               
               Cow position:chr23:14895506-14895684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 7

               
               
               Conread position:223-397
               
               
               Cow position:chr23:26283887-26283714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):83, 23

               
               
               Conread position:224-397
               
               
               Cow position:chr23:39780921-39780744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:225-354
               
               
               Cow position:chr23:38846009-38845875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:225-397
               
               
               Cow position:chr23:3244303-3244479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:226-395
               
               
               Cow position:chr23:1397874-1398047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:226-398
               
               
               Cow position:chr23:25358877-25358718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:235-361
               
               
               Cow position:chr23:29972545-29972413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:236-397
               
               
               Cow position:chr23:4104552-4104388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 119

               
               
               Conread position:236-397
               
               
               Cow position:chr23:25371973-25371816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):137, 42

               
               
               Conread position:237-393
               
               
               Cow position:chr23:3105038-3104878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:238-367
               
               
               Cow position:chr23:26591759-26591890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):68, 100

               
               
               Conread position:238-398
               
               
               Cow position:chr23:4336219-4336058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):68, 115

               
               
               Conread position:242-397
               
               
               Cow position:chr23:13673883-13674042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:244-371
               
               
               Cow position:chr23:204425-204297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):64, 39

               
               
               Conread position:244-371
               
               
               Cow position:chr23:23114205-23114075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-392
               
               
               Cow position:chr23:3835447-3835600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 107

               
               
               Conread position:244-397
               
               
               Cow position:chr23:4877507-4877350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):52, 45

               
               
               Conread position:244-397
               
               
               Cow position:chr23:10553862-10554019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr23:21336337-21336494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):29, 35

               
               
               Conread position:244-397
               
               
               Cow position:chr23:38455031-38455189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:245-391
               
               
               Cow position:chr23:4327556-4327705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:245-397
               
               
               Cow position:chr23:3234635-3234792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:245-397
               
               
               Cow position:chr23:11129378-11129223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):63, 51

               
               
               Conread position:245-398
               
               
               Cow position:chr23:18415911-18416062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):65, 7

               
               
               Conread position:245-398
               
               
               Cow position:chr23:36018296-36018139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:248-397
               
               
               Cow position:chr23:4968391-4968534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):125, 27

               
               
               Conread position:248-397
               
               
               Cow position:chr23:30951098-30950944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 31

               
               
               Conread position:249-397
               
               
               Cow position:chr23:306664-306512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:249-397
               
               
               Cow position:chr23:307597-307445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:250-366
               
               
               Cow position:chr23:33232564-33232680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:250-396
               
               
               Cow position:chr23:1701310-1701162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):58, 18

               
               
               Conread position:250-397
               
               
               Cow position:chr23:21309272-21309422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:251-397
               
               
               Cow position:chr23:5799323-5799471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:252-375
               
               
               Cow position:chr23:1480778-1480652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-384
               
               
               Cow position:chr23:1798249-1798113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-392
               
               
               Cow position:chr23:12405684-12405825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:252-395
               
               
               Cow position:chr23:40737879-40738027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr23:4003785-4003634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr23:4972904-4972756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):56, 92

               
               
               Conread position:252-398
               
               
               Cow position:chr23:1759383-1759236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):56, 23

               
               
               Conread position:252-398
               
               
               Cow position:chr23:20563833-20563685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):57, 29

               
               
               Conread position:254-397
               
               
               Cow position:chr23:34356777-34356631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:254-398
               
               
               Cow position:chr23:187315-187167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:255-397
               
               
               Cow position:chr23:13599476-13599332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):53, 117

               
               
               Conread position:256-394
               
               
               Cow position:chr23:21423902-21423760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:257-397
               
               
               Cow position:chr23:14569367-14569511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:258-398
               
               
               Cow position:chr23:13137803-13137947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr23:5686491-5686632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-398
               
               
               Cow position:chr23:33622019-33622161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-398
               
               
               Cow position:chr23:40648600-40648743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:261-396
               
               
               Cow position:chr23:35930081-35929941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:261-397
               
               
               Cow position:chr23:41348495-41348634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:262-367
               
               
               Cow position:chr23:18417221-18417113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:262-396
               
               
               Cow position:chr23:6994854-6994992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:262-397
               
               
               Cow position:chr23:3190996-3191135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:264-395
               
               
               Cow position:chr23:24779416-24779551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:267-398
               
               
               Cow position:chr23:2406025-2405887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:272-397
               
               
               Cow position:chr23:57043-57174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:272-397
               
               
               Cow position:chr23:16447570-16447697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 86

               
               
               Conread position:272-397
               
               
               Cow position:chr23:16699923-16700052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:275-397
               
               
               Cow position:chr23:283277-283403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:275-397
               
               
               Cow position:chr23:35247483-35247357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:278-396
               
               
               Cow position:chr23:4054330-4054208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:285-397
               
               
               Cow position:chr23:23409839-23409723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 61

               
               
               Conread position:296-397
               
               
               Cow position:chr23:1803815-1803918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:124-317
               
               
               Cow position:chr24:7750981-7751176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 110

               
               
               Conread position:124-357
               
               
               Cow position:chr24:40850379-40850158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:132-263
               
               
               Cow position:chr24:216937-216806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-301
               
               
               Cow position:chr24:14062040-14061881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:136-383
               
               
               Cow position:chr24:30203032-30202801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):166, 70

               
               
               Conread position:136-391
               
               
               Cow position:chr24:12656810-12657080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:136-395
               
               
               Cow position:chr24:14171461-14171724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):88, 31

               
               
               Conread position:137-397
               
               
               Cow position:chr24:43364581-43364324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:138-398
               
               
               Cow position:chr24:14648148-14648397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):163, 51

               
               
               Conread position:143-396
               
               
               Cow position:chr24:39905254-39905490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):230, 63

               
               
               Conread position:144-246
               
               
               Cow position:chr24:34533308-34533206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-370
               
               
               Cow position:chr24:13058232-13058014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):37, 119

               
               
               Conread position:144-371
               
               
               Cow position:chr24:256229-256016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):162, 27

               
               
               Conread position:144-391
               
               
               Cow position:chr24:16118572-16118329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):158, 76

               
               
               Conread position:146-265
               
               
               Cow position:chr24:16517681-16517801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:148-391
               
               
               Cow position:chr24:14786583-14786348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):158, 110

               
               
               Conread position:152-397
               
               
               Cow position:chr24:11007668-11007423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:160-352
               
               
               Cow position:chr24:645567-645368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:197-397
               
               
               Cow position:chr24:34556200-34555999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):85, 28

               
               
               Conread position:200-396
               
               
               Cow position:chr24:33465459-33465654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):106, 30

               
               
               Conread position:207-378
               
               
               Cow position:chr24:22235624-22235449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:209-395
               
               
               Cow position:chr24:28326927-28327114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):97, 69

               
               
               Conread position:221-371
               
               
               Cow position:chr24:32739132-32739280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:221-397
               
               
               Cow position:chr24:28470534-28470717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):27, 16

               
               
               Conread position:221-397
               
               
               Cow position:chr24:41406034-41405853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 23

               
               
               Conread position:221-397
               
               
               Cow position:chr24:42726591-42726413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:222-397
               
               
               Cow position:chr24:18615141-18614964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):38, 52

               
               
               Conread position:224-397
               
               
               Cow position:chr24:32071100-32070926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):82, 20

               
               
               Conread position:225-398
               
               
               Cow position:chr24:15373544-15373367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:226-396
               
               
               Cow position:chr24:20969529-20969698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):82, 47

               
               
               Conread position:234-366
               
               
               Cow position:chr24:18313803-18313939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:236-397
               
               
               Cow position:chr24:16895311-16895474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:241-371
               
               
               Cow position:chr24:162125-161993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):74, 7

               
               
               Conread position:243-392
               
               
               Cow position:chr24:32230385-32230540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:244-347
               
               
               Cow position:chr24:10840800-10840906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-392
               
               
               Cow position:chr24:18331842-18331686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:244-395
               
               
               Cow position:chr24:28289134-28289288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):62, 45

               
               
               Conread position:244-397
               
               
               Cow position:chr24:24457132-24457287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 16

               
               
               Conread position:244-397
               
               
               Cow position:chr24:29673640-29673485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:244-397
               
               
               Cow position:chr24:40404692-40404845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 106

               
               
               Conread position:244-402
               
               
               Cow position:chr24:41412177-41412336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 131

               
               
               Conread position:245-397
               
               
               Cow position:chr24:34008454-34008610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:246-367
               
               
               Cow position:chr24:39218434-39218558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:246-397
               
               
               Cow position:chr24:28690802-28690648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):60, 104

               
               
               Conread position:246-398
               
               
               Cow position:chr24:19623974-19623818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):17, 11

               
               
               Conread position:247-397
               
               
               Cow position:chr24:18741455-18741609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:247-397
               
               
               Cow position:chr24:34465391-34465543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):59, 5

               
               
               Conread position:248-392
               
               
               Cow position:chr24:5143844-5143991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 19

               
               
               Conread position:249-397
               
               
               Cow position:chr24:18750822-18750667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 143

               
               
               Conread position:250-390
               
               
               Cow position:chr24:5152635-5152493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:250-392
               
               
               Cow position:chr24:33944515-33944369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:250-397
               
               
               Cow position:chr24:18668690-18668541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 28

               
               
               Conread position:251-392
               
               
               Cow position:chr24:27448756-27448612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 24

               
               
               Conread position:252-370
               
               
               Cow position:chr24:11028578-11028698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 37

               
               
               Conread position:252-397
               
               
               Cow position:chr24:11840295-11840150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:252-397
               
               
               Cow position:chr24:34742865-34742715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr24:39910922-39911071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr24:44987263-44987412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr24:352495-352644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):56, 85

               
               
               Conread position:253-379
               
               
               Cow position:chr24:34301928-34302057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 91

               
               
               Conread position:253-397
               
               
               Cow position:chr24:27290982-27290834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:254-398
               
               
               Cow position:chr24:2992771-2992917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 105

               
               
               Conread position:257-412
               
               
               Cow position:chr24:36303208-36303368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 152

               
               
               Conread position:260-387
               
               
               Cow position:chr24:21623326-21623198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 98

               
               
               Conread position:260-398
               
               
               Cow position:chr24:42862726-42862586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):53, 86

               
               
               Conread position:261-392
               
               
               Cow position:chr24:16645216-16645352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:261-396
               
               
               Cow position:chr24:32890941-32891080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:262-397
               
               
               Cow position:chr24:28721986-28721852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):111, 84

               
               
               Conread position:273-404
               
               
               Cow position:chr24:15263967-15263831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:122-396
               
               
               Cow position:chr25:21894616-21894898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:123-348
               
               
               Cow position:chr25:31343816-31344060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 163

               
               
               Conread position:133-343
               
               
               Cow position:chr25:16316006-16316214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 44

               
               
               Conread position:135-348
               
               
               Cow position:chr25:12899968-12899762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:135-385
               
               
               Cow position:chr25:6942150-6942401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):167, 71

               
               
               Conread position:136-254
               
               
               Cow position:chr25:7554896-7555014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-353
               
               
               Cow position:chr25:25828944-25828738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):165, 70

               
               
               Conread position:136-398
               
               
               Cow position:chr25:22341761-22341511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):169, 33

               
               
               Conread position:137-253
               
               
               Cow position:chr25:36762694-36762577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:137-297
               
               
               Cow position:chr25:10653987-10654143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:137-396
               
               
               Cow position:chr25:38421905-38421652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):158, 29

               
               
               Conread position:137-397
               
               
               Cow position:chr25:18906116-18905870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):165, 69

               
               
               Conread position:144-265
               
               
               Cow position:chr25:12064469-12064352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:144-308
               
               
               Cow position:chr25:7258927-7259090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):103, 27

               
               
               Conread position:144-394
               
               
               Cow position:chr25:13672630-13672383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):162, 44

               
               
               Conread position:144-397
               
               
               Cow position:chr25:26161195-26160950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):162, 7

               
               
               Conread position:144-397
               
               
               Cow position:chr25:36017769-36017527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):152, 43

               
               
               Conread position:151-381
               
               
               Cow position:chr25:23016252-23016021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):90, 20

               
               
               Conread position:200-394
               
               
               Cow position:chr25:13550875-13551077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):110, 77

               
               
               Conread position:202-397
               
               
               Cow position:chr25:12252629-12252823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):106, 73

               
               
               Conread position:205-352
               
               
               Cow position:chr25:14134433-14134282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 36

               
               
               Conread position:224-398
               
               
               Cow position:chr25:34241941-34242120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:225-371
               
               
               Cow position:chr25:21926282-21926430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):81, 24

               
               
               Conread position:226-398
               
               
               Cow position:chr25:26052063-26051886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:229-386
               
               
               Cow position:chr25:14197019-14196857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:229-397
               
               
               Cow position:chr25:12064205-12064033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:239-397
               
               
               Cow position:chr25:10504194-10504352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):69, 120

               
               
               Conread position:243-397
               
               
               Cow position:chr25:35109125-35109284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:244-367
               
               
               Cow position:chr25:13805156-13805029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:244-367
               
               
               Cow position:chr25:36135997-36136124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr25:61792-61635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr25:4009233-4009078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):62, 29

               
               
               Conread position:244-397
               
               
               Cow position:chr25:15218274-15218121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):62, 126

               
               
               Conread position:244-397
               
               
               Cow position:chr25:22750864-22751022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:245-391
               
               
               Cow position:chr25:7581286-7581440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 30

               
               
               Conread position:246-381
               
               
               Cow position:chr25:23323628-23323491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 32

               
               
               Conread position:246-397
               
               
               Cow position:chr25:11585660-11585503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:247-397
               
               
               Cow position:chr25:31762470-31762623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):59, 31

               
               
               Conread position:248-396
               
               
               Cow position:chr25:14225498-14225348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 27

               
               
               Conread position:248-398
               
               
               Cow position:chr25:25861213-25861369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:249-397
               
               
               Cow position:chr25:1823961-1824112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:251-398
               
               
               Cow position:chr25:40904695-40904846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:252-390
               
               
               Cow position:chr25:5808079-5807937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr25:432914-433063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr25:7380706-7380854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:252-397
               
               
               Cow position:chr25:17474379-17474527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):56, 118

               
               
               Conread position:252-397
               
               
               Cow position:chr25:33311192-33311342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr25:9002805-9002656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:252-399
               
               
               Cow position:chr25:31514315-31514164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:254-397
               
               
               Cow position:chr25:11956935-11956789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:255-397
               
               
               Cow position:chr25:6473956-6474102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:256-390
               
               
               Cow position:chr25:28187815-28187953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:258-397
               
               
               Cow position:chr25:30817017-30816874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:260-381
               
               
               Cow position:chr25:36369944-36369820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):48, 63

               
               
               Conread position:260-381
               
               
               Cow position:chr25:36375635-36375511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):48, 63

               
               
               Conread position:260-397
               
               
               Cow position:chr25:33101481-33101620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:260-398
               
               
               Cow position:chr25:5474104-5474246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:260-398
               
               
               Cow position:chr25:9615963-9615821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:263-398
               
               
               Cow position:chr25:13325703-13325564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:266-397
               
               
               Cow position:chr25:16921676-16921812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:266-398
               
               
               Cow position:chr25:18564606-18564471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):44, 90

               
               
               Conread position:267-397
               
               
               Cow position:chr25:30656530-30656661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:267-398
               
               
               Cow position:chr25:10791696-10791830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:268-397
               
               
               Cow position:chr25:13503552-13503418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:270-397
               
               
               Cow position:chr25:14513231-14513099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:273-397
               
               
               Cow position:chr25:10643197-10643324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):32, 5

               
               
               Conread position:283-398
               
               
               Cow position:chr25:16064995-16064876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:295-397
               
               
               Cow position:chr25:38425448-38425346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):78, 20

               
               
               Conread position:115-218
               
               
               Cow position:chr26:16795971-16796075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:123-218
               
               
               Cow position:chr26:13614433-13614528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:123-396
               
               
               Cow position:chr26:6865290-6865029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):28, 100

               
               
               Conread position:136-387
               
               
               Cow position:chr26:7183726-7183983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):46, 58

               
               
               Conread position:136-397
               
               
               Cow position:chr26:22354697-22354417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:137-332
               
               
               Cow position:chr26:20489684-20489878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):62, 30

               
               
               Conread position:137-333
               
               
               Cow position:chr26:15111989-15112179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):69, 83

               
               
               Conread position:141-271
               
               
               Cow position:chr26:10767764-10767895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):78, 30

               
               
               Conread position:142-397
               
               
               Cow position:chr26:11263897-11263645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):128, 25

               
               
               Conread position:144-381
               
               
               Cow position:chr26:15599280-15599506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):164, 75

               
               
               Conread position:144-398
               
               
               Cow position:chr26:32863408-32863663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):62, 133

               
               
               Conread position:145-398
               
               
               Cow position:chr26:34154380-34154137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):161, 47

               
               
               Conread position:200-397
               
               
               Cow position:chr26:22152430-22152231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:221-391
               
               
               Cow position:chr26:32601527-32601360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):87, 23

               
               
               Conread position:223-397
               
               
               Cow position:chr26:10965414-10965590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):64, 27

               
               
               Conread position:229-397
               
               
               Cow position:chr26:30254464-30254629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):77, 47

               
               
               Conread position:231-371
               
               
               Cow position:chr26:32825827-32825969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):75, 65

               
               
               Conread position:237-397
               
               
               Cow position:chr26:26294028-26294188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):69, 137

               
               
               Conread position:242-398
               
               
               Cow position:chr26:7157442-7157603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:244-398
               
               
               Cow position:chr26:19774137-19774296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):28, 36

               
               
               Conread position:245-392
               
               
               Cow position:chr26:16435497-16435647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):61, 18

               
               
               Conread position:245-397
               
               
               Cow position:chr26:17398736-17398580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:246-366
               
               
               Cow position:chr26:7154027-7153905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:246-395
               
               
               Cow position:chr26:3706948-3706798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 15

               
               
               Conread position:246-397
               
               
               Cow position:chr26:24453750-24453903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 108

               
               
               Conread position:247-395
               
               
               Cow position:chr26:32836396-32836245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):59, 27

               
               
               Conread position:247-396
               
               
               Cow position:chr26:9099377-9099527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):58, 28

               
               
               Conread position:248-397
               
               
               Cow position:chr26:32655451-32655605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):64, 105

               
               
               Conread position:249-381
               
               
               Cow position:chr26:6823313-6823181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):57, 13

               
               
               Conread position:250-397
               
               
               Cow position:chr26:19671627-19671482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:250-397
               
               
               Cow position:chr26:32834424-32834573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 124

               
               
               Conread position:250-398
               
               
               Cow position:chr26:4167200-4167350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 30

               
               
               Conread position:252-363
               
               
               Cow position:chr26:26245019-26245131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:252-392
               
               
               Cow position:chr26:31633881-31633737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-392
               
               
               Cow position:chr26:34060485-34060342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 10

               
               
               Conread position:252-396
               
               
               Cow position:chr26:11672450-11672302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr26:9501861-9501713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 108

               
               
               Conread position:252-397
               
               
               Cow position:chr26:29664004-29664155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr26:31903319-31903170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:252-398
               
               
               Cow position:chr26:34026884-34027032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 118

               
               
               Conread position:254-397
               
               
               Cow position:chr26:6794301-6794149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:254-397
               
               
               Cow position:chr26:33253167-33253312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 12

               
               
               Conread position:255-395
               
               
               Cow position:chr26:16796062-16796200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:256-397
               
               
               Cow position:chr26:4854693-4854549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 67

               
               
               Conread position:256-397
               
               
               Cow position:chr26:8353118-8352973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:256-398
               
               
               Cow position:chr26:6714153-6714297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):52, 119

               
               
               Conread position:260-387
               
               
               Cow position:chr26:11884443-11884317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):48, 8

               
               
               Conread position:260-396
               
               
               Cow position:chr26:25526394-25526254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr26:12893282-12893423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr26:16922083-16921942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 77

               
               
               Conread position:260-397
               
               
               Cow position:chr26:19459839-19459697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:263-392
               
               
               Cow position:chr26:5407121-5406988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:267-398
               
               
               Cow position:chr26:28374305-28374440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:272-388
               
               
               Cow position:chr26:28446716-28446596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:272-398
               
               
               Cow position:chr26:18381445-18381317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 6

               
               
               Conread position:273-397
               
               
               Cow position:chr26:25074849-25074721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:278-397
               
               
               Cow position:chr26:1325884-1325761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:278-397
               
               
               Cow position:chr26:18876835-18876958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:135-395
               
               
               Cow position:chr27:11466764-11466498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):134, 157

               
               
               Conread position:135-398
               
               
               Cow position:chr27:15214946-15215199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):168, 98

               
               
               Conread position:136-372
               
               
               Cow position:chr27:17927402-17927171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:136-397
               
               
               Cow position:chr27:25372663-25372407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):92, 172

               
               
               Conread position:136-398
               
               
               Cow position:chr27:6014924-6015172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):237, 69

               
               
               Conread position:138-355
               
               
               Cow position:chr27:26503148-26502933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):127, 26

               
               
               Conread position:139-395
               
               
               Cow position:chr27:19755812-19756063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:144-279
               
               
               Cow position:chr27:30293161-30293026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-379
               
               
               Cow position:chr27:16237351-16237578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):162, 57

               
               
               Conread position:144-391
               
               
               Cow position:chr27:536190-536426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):229, 81

               
               
               Conread position:144-397
               
               
               Cow position:chr27:1789418-1789170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):166, 98

               
               
               Conread position:144-398
               
               
               Cow position:chr27:23482947-23483194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):62, 76

               
               
               Conread position:145-263
               
               
               Cow position:chr27:30793818-30793698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:145-392
               
               
               Cow position:chr27:27673296-27673052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):157, 120

               
               
               Conread position:150-258
               
               
               Cow position:chr27:26907118-26907010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:167-397
               
               
               Cow position:chr27:22723965-22723724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:185
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:202-397
               
               
               Cow position:chr27:30359177-30359376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:206-397
               
               
               Cow position:chr27:16088578-16088776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 15

               
               
               Conread position:209-397
               
               
               Cow position:chr27:21393730-21393538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 21

               
               
               Conread position:212-398
               
               
               Cow position:chr27:23863369-23863559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):36, 151

               
               
               Conread position:217-371
               
               
               Cow position:chr27:29658926-29658773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):91, 9

               
               
               Conread position:221-398
               
               
               Cow position:chr27:29991658-29991477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:224-385
               
               
               Cow position:chr27:22153661-22153816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):81, 28

               
               
               Conread position:224-398
               
               
               Cow position:chr27:4386268-4386091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:225-397
               
               
               Cow position:chr27:27064645-27064470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):81, 17

               
               
               Conread position:225-397
               
               
               Cow position:chr27:28035054-28034882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):98, 85

               
               
               Conread position:226-384
               
               
               Cow position:chr27:17918922-17918761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):80, 29

               
               
               Conread position:235-397
               
               
               Cow position:chr27:29319215-29319380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):71, 54

               
               
               Conread position:242-395
               
               
               Cow position:chr27:26413443-26413287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):64, 10

               
               
               Conread position:242-396
               
               
               Cow position:chr27:14957915-14957761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 47

               
               
               Conread position:243-397
               
               
               Cow position:chr27:4155813-4155965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:244-397
               
               
               Cow position:chr27:1353395-1353552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr27:22454964-22454806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr27:30908484-30908641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 86

               
               
               Conread position:244-398
               
               
               Cow position:chr27:30489598-30489440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 138

               
               
               Conread position:245-397
               
               
               Cow position:chr27:17918499-17918344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):61, 10

               
               
               Conread position:245-397
               
               
               Cow position:chr27:18923019-18922864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):61, 104

               
               
               Conread position:246-383
               
               
               Cow position:chr27:29236378-29236517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):60, 125

               
               
               Conread position:246-397
               
               
               Cow position:chr27:6550278-6550428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):62, 114

               
               
               Conread position:246-397
               
               
               Cow position:chr27:20584639-20584487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 43

               
               
               Conread position:246-397
               
               
               Cow position:chr27:31018011-31017860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 129

               
               
               Conread position:247-397
               
               
               Cow position:chr27:26793967-26793814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):64, 7

               
               
               Conread position:248-388
               
               
               Cow position:chr27:24303763-24303907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:248-392
               
               
               Cow position:chr27:29831881-29831733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 27

               
               
               Conread position:249-391
               
               
               Cow position:chr27:19660748-19660895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:249-393
               
               
               Cow position:chr27:27270726-27270575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):24, 31

               
               
               Conread position:250-395
               
               
               Cow position:chr27:19452822-19452969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:250-397
               
               
               Cow position:chr27:212774-212926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:250-397
               
               
               Cow position:chr27:2592360-2592512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:250-398
               
               
               Cow position:chr27:10979683-10979833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 16

               
               
               Conread position:251-397
               
               
               Cow position:chr27:25809696-25809550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 100

               
               
               Conread position:252-367
               
               
               Cow position:chr27:26980142-26980024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-381
               
               
               Cow position:chr27:232374-232505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:252-382
               
               
               Cow position:chr27:27747645-27747511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:252-396
               
               
               Cow position:chr27:23147986-23148134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr27:22423337-22423485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:252-397
               
               
               Cow position:chr27:24331541-24331689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr27:30764856-30765000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):121, 63

               
               
               Conread position:252-398
               
               
               Cow position:chr27:5553290-5553439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):63, 129

               
               
               Conread position:252-398
               
               
               Cow position:chr27:10323666-10323807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):121, 53

               
               
               Conread position:252-398
               
               
               Cow position:chr27:13318154-13318004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:252-402
               
               
               Cow position:chr27:30914830-30914984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 108

               
               
               Conread position:256-386
               
               
               Cow position:chr27:26400895-26400763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:256-397
               
               
               Cow position:chr27:16512346-16512202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:256-398
               
               
               Cow position:chr27:13940733-13940587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:256-407
               
               
               Cow position:chr27:26437297-26437143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 151

               
               
               Conread position:259-397
               
               
               Cow position:chr27:29388498-29388641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:260-396
               
               
               Cow position:chr27:18435305-18435165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 62

               
               
               Conread position:260-397
               
               
               Cow position:chr27:16705079-16705220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-398
               
               
               Cow position:chr27:13254968-13254827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:260-398
               
               
               Cow position:chr27:15865435-15865577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:261-396
               
               
               Cow position:chr27:20749180-20749045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:261-397
               
               
               Cow position:chr27:15867219-15867365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:262-395
               
               
               Cow position:chr27:6162580-6162443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:263-398
               
               
               Cow position:chr27:20812736-20812875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:271-391
               
               
               Cow position:chr27:23216477-23216356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 62

               
               
               Conread position:272-371
               
               
               Cow position:chr27:26909751-26909649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:272-395
               
               
               Cow position:chr27:8263498-8263370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:272-396
               
               
               Cow position:chr27:1637095-1636967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:272-397
               
               
               Cow position:chr27:9977522-9977654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:273-397
               
               
               Cow position:chr27:26112074-26111945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:281-398
               
               
               Cow position:chr27:11435471-11435352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:282-398
               
               
               Cow position:chr27:15332447-15332325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:135-370
               
               
               Cow position:chr28:11365260-11365507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:136-302
               
               
               Cow position:chr28:32521974-32522135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:136-306
               
               
               Cow position:chr28:24629726-24629554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):134, 38

               
               
               Conread position:136-364
               
               
               Cow position:chr28:8259068-8258850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):170, 35

               
               
               Conread position:136-397
               
               
               Cow position:chr28:4841133-4841401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:138-281
               
               
               Cow position:chr28:8408357-8408504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:138-398
               
               
               Cow position:chr28:8408964-8408725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):235, 68

               
               
               Conread position:139-272
               
               
               Cow position:chr28:28075568-28075698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:144-268
               
               
               Cow position:chr28:8147076-8147206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:144-384
               
               
               Cow position:chr28:2743315-2743086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):162, 89

               
               
               Conread position:144-398
               
               
               Cow position:chr28:10999429-10999678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):50, 163

               
               
               Conread position:144-398
               
               
               Cow position:chr28:14934200-14933949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):128, 75

               
               
               Conread position:145-397
               
               
               Cow position:chr28:19025741-19026013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:148-392
               
               
               Cow position:chr28:16110164-16109936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):148, 23

               
               
               Conread position:150-398
               
               
               Cow position:chr28:19079604-19079854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):151, 69

               
               
               Conread position:201-387
               
               
               Cow position:chr28:29041863-29042052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):105, 41

               
               
               Conread position:201-392
               
               
               Cow position:chr28:25487857-25488050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 52

               
               
               Conread position:205-385
               
               
               Cow position:chr28:12385103-12385289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 76

               
               
               Conread position:205-391
               
               
               Cow position:chr28:17398049-17398236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):22, 97

               
               
               Conread position:205-391
               
               
               Cow position:chr28:17414288-17414477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):26, 76

               
               
               Conread position:205-397
               
               
               Cow position:chr28:8147672-8147871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 130

               
               
               Conread position:205-397
               
               
               Cow position:chr28:20313462-20313269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:207-396
               
               
               Cow position:chr28:31109819-31110011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):81, 68

               
               
               Conread position:210-397
               
               
               Cow position:chr28:5867904-5867719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:225-398
               
               
               Cow position:chr28:7388600-7388776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 132

               
               
               Conread position:226-397
               
               
               Cow position:chr28:5650569-5650745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:230-397
               
               
               Cow position:chr28:27161164-27161334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):76, 97

               
               
               Conread position:231-398
               
               
               Cow position:chr28:13090365-13090534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 7

               
               
               Conread position:233-397
               
               
               Cow position:chr28:2752334-2752502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:238-397
               
               
               Cow position:chr28:25677183-25677350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:241-384
               
               
               Cow position:chr28:4022824-4022678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 11

               
               
               Conread position:241-384
               
               
               Cow position:chr28:34097468-34097612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):13, 63

               
               
               Conread position:241-396
               
               
               Cow position:chr28:5152753-5152594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:241-398
               
               
               Cow position:chr28:3200610-3200450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):67, 11

               
               
               Conread position:242-386
               
               
               Cow position:chr28:9418816-9418963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 12

               
               
               Conread position:243-391
               
               
               Cow position:chr28:24707047-24706895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:243-397
               
               
               Cow position:chr28:18797470-18797312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):9, 78

               
               
               Conread position:244-392
               
               
               Cow position:chr28:18770228-18770081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 10

               
               
               Conread position:244-392
               
               
               Cow position:chr28:32179846-32179694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 120

               
               
               Conread position:244-397
               
               
               Cow position:chr28:4823749-4823596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):10, 57

               
               
               Conread position:244-398
               
               
               Cow position:chr28:2772859-2772704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 130

               
               
               Conread position:245-391
               
               
               Cow position:chr28:19222004-19222153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):64, 33

               
               
               Conread position:246-367
               
               
               Cow position:chr28:5245497-5245379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:246-397
               
               
               Cow position:chr28:2899136-2898981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:246-398
               
               
               Cow position:chr28:5236457-5236613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:248-398
               
               
               Cow position:chr28:8347872-8347722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):57, 31

               
               
               Conread position:250-395
               
               
               Cow position:chr28:26743769-26743620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:251-397
               
               
               Cow position:chr28:19038879-19039027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:252-387
               
               
               Cow position:chr28:11398656-11398795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:252-391
               
               
               Cow position:chr28:4163442-4163581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:252-392
               
               
               Cow position:chr28:6321956-6321814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:252-395
               
               
               Cow position:chr28:6358272-6358420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:252-396
               
               
               Cow position:chr28:3011129-3011276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):54, 93

               
               
               Conread position:252-396
               
               
               Cow position:chr28:19262446-19262594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr28:5630237-5630090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr28:7697841-7697986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):54, 108

               
               
               Conread position:252-397
               
               
               Cow position:chr28:8149491-8149640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr28:17680763-17680614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr28:20397230-20397378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:252-398
               
               
               Cow position:chr28:5232076-5231929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):56, 38

               
               
               Conread position:252-398
               
               
               Cow position:chr28:11307376-11307527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr28:13048143-13048292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr28:20173976-20173827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 57

               
               
               Conread position:252-398
               
               
               Cow position:chr28:26982597-26982747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr28:27218463-27218314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):56, 83

               
               
               Conread position:252-400
               
               
               Cow position:chr28:4307755-4307908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:253-387
               
               
               Cow position:chr28:6059328-6059468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:253-397
               
               
               Cow position:chr28:5144381-5144529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:253-401
               
               
               Cow position:chr28:30081585-30081736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):55, 36

               
               
               Conread position:254-396
               
               
               Cow position:chr28:3726071-3726218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:254-397
               
               
               Cow position:chr28:5236012-5235873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):119, 24

               
               
               Conread position:256-396
               
               
               Cow position:chr28:5817978-5817833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:257-397
               
               
               Cow position:chr28:11866529-11866673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:258-391
               
               
               Cow position:chr28:23047753-23047618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):48, 102

               
               
               Conread position:258-396
               
               
               Cow position:chr28:17601419-17601561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:258-397
               
               
               Cow position:chr28:2819910-2819767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:259-397
               
               
               Cow position:chr28:4881104-4881248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:260-390
               
               
               Cow position:chr28:4355679-4355547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:260-391
               
               
               Cow position:chr28:11559499-11559634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-396
               
               
               Cow position:chr28:7008845-7008985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:261-397
               
               
               Cow position:chr28:10615814-10615954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:262-397
               
               
               Cow position:chr28:3143747-3143883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):44, 91

               
               
               Conread position:269-391
               
               
               Cow position:chr28:26784118-26784243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:272-384
               
               
               Cow position:chr28:16692044-16691928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:272-397
               
               
               Cow position:chr28:15362702-15362571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:275-397
               
               
               Cow position:chr28:4765794-4765666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:275-398
               
               
               Cow position:chr28:11346369-11346496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:132-391
               
               
               Cow position:chr29:40298790-40299029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):174, 86

               
               
               Conread position:135-218
               
               
               Cow position:chr29:5147838-5147755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:74
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:135-367
               
               
               Cow position:chr29:11673410-11673180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):68, 36

               
               
               Conread position:136-249
               
               
               Cow position:chr29:2623278-2623391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-333
               
               
               Cow position:chr29:6812992-6813187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):142, 84

               
               
               Conread position:136-367
               
               
               Cow position:chr29:1403025-1402782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):125, 33

               
               
               Conread position:137-397
               
               
               Cow position:chr29:31814179-31813929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):150, 61

               
               
               Conread position:142-272
               
               
               Cow position:chr29:32766697-32766824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:143-397
               
               
               Cow position:chr29:16365657-16365904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):163, 48

               
               
               Conread position:144-257
               
               
               Cow position:chr29:2523378-2523265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-367
               
               
               Cow position:chr29:17022376-17022166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):161, 89

               
               
               Conread position:144-372
               
               
               Cow position:chr29:32302007-32301762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:144-398
               
               
               Cow position:chr29:683264-683506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):205, 115

               
               
               Conread position:144-398
               
               
               Cow position:chr29:10156072-10156317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):162, 122

               
               
               Conread position:206-397
               
               
               Cow position:chr29:6293303-6293493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):100, 34

               
               
               Conread position:216-391
               
               
               Cow position:chr29:16672660-16672482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):32, 15

               
               
               Conread position:221-370
               
               
               Cow position:chr29:32799549-32799698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):81, 23

               
               
               Conread position:224-397
               
               
               Cow position:chr29:38581143-38580965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 128

               
               
               Conread position:228-371
               
               
               Cow position:chr29:26764521-26764378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 74

               
               
               Conread position:233-372
               
               
               Cow position:chr29:33393830-33393689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):73, 11

               
               
               Conread position:233-398
               
               
               Cow position:chr29:26653891-26654062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):25, 49

               
               
               Conread position:238-390
               
               
               Cow position:chr29:11042572-11042424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):134, 28

               
               
               Conread position:241-367
               
               
               Cow position:chr29:3538531-3538660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:241-397
               
               
               Cow position:chr29:24187921-24188080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 11

               
               
               Conread position:242-393
               
               
               Cow position:chr29:12452939-12452784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 54

               
               
               Conread position:243-396
               
               
               Cow position:chr29:3293090-3292934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:243-397
               
               
               Cow position:chr29:22936414-22936257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 130

               
               
               Conread position:244-390
               
               
               Cow position:chr29:1022437-1022288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):61, 45

               
               
               Conread position:244-396
               
               
               Cow position:chr29:13028580-13028430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):62, 29

               
               
               Conread position:245-382
               
               
               Cow position:chr29:19059942-19060082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:245-389
               
               
               Cow position:chr29:19061634-19061782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:245-392
               
               
               Cow position:chr29:6844491-6844642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 131

               
               
               Conread position:245-397
               
               
               Cow position:chr29:13867068-13867225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:246-363
               
               
               Cow position:chr29:26631181-26631061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:246-396
               
               
               Cow position:chr29:86872-87025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 43

               
               
               Conread position:246-398
               
               
               Cow position:chr29:36220674-36220518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:247-397
               
               
               Cow position:chr29:13639227-13639382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:248-397
               
               
               Cow position:chr29:6286022-6286176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:250-396
               
               
               Cow position:chr29:8163695-8163841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 16

               
               
               Conread position:250-396
               
               
               Cow position:chr29:29057308-29057165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 25

               
               
               Conread position:250-397
               
               
               Cow position:chr29:501333-501184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 125

               
               
               Conread position:251-397
               
               
               Cow position:chr29:34359687-34359835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:252-381
               
               
               Cow position:chr29:22577046-22577177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:252-386
               
               
               Cow position:chr29:24051248-24051385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 77

               
               
               Conread position:252-397
               
               
               Cow position:chr29:30441071-30440919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr29:34745525-34745672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 131

               
               
               Conread position:252-397
               
               
               Cow position:chr29:41530983-41530835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr29:7966377-7966230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:252-398
               
               
               Cow position:chr29:15947301-15947151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr29:16200344-16200494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr29:17297270-17297120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr29:21443204-21443354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:252-406
               
               
               Cow position:chr29:28420889-28420732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 100

               
               
               Conread position:253-383
               
               
               Cow position:chr29:18878348-18878482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:253-398
               
               
               Cow position:chr29:17409468-17409319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:254-397
               
               
               Cow position:chr29:5520352-5520500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:254-398
               
               
               Cow position:chr29:35084090-35084238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:257-397
               
               
               Cow position:chr29:31934508-31934364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:260-363
               
               
               Cow position:chr29:28242217-28242321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr29:35292218-35292077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 15

               
               
               Conread position:261-396
               
               
               Cow position:chr29:35458646-35458785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):34, 81

               
               
               Conread position:264-397
               
               
               Cow position:chr29:11053740-11053874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 15

               
               
               Conread position:265-395
               
               
               Cow position:chr29:40994768-40994903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):7, 86

               
               
               Conread position:272-391
               
               
               Cow position:chr29:25333347-25333468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:273-392
               
               
               Cow position:chr29:2056174-2056051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:275-397
               
               
               Cow position:chr29:4423328-4423454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:275-397
               
               
               Cow position:chr29:31981942-31981816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:284-397
               
               
               Cow position:chr29:8686434-8686315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:105-395
               
               
               Cow position:chr3:15173351-15173046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):64, 286

               
               
               Conread position:120-397
               
               
               Cow position:chr3:57624703-57624427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):47, 101

               
               
               Conread position:125-322
               
               
               Cow position:chr3:71489002-71488789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:135-340
               
               
               Cow position:chr3:62622971-62623175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):13, 88

               
               
               Conread position:135-371
               
               
               Cow position:chr3:35285273-35285033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 89

               
               
               Conread position:136-230
               
               
               Cow position:chr3:24584969-24585063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-234
               
               
               Cow position:chr3:61466991-61467089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-244
               
               
               Cow position:chr3:57627659-57627551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-266
               
               
               Cow position:chr3:39909479-39909609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-270
               
               
               Cow position:chr3:54435147-54435015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:136-348
               
               
               Cow position:chr3:17447401-17447602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):170, 70

               
               
               Conread position:136-370
               
               
               Cow position:chr3:83504414-83504186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):169, 78

               
               
               Conread position:136-397
               
               
               Cow position:chr3:17934729-17934975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):170, 25

               
               
               Conread position:136-397
               
               
               Cow position:chr3:26230330-26230059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):166, 30

               
               
               Conread position:136-398
               
               
               Cow position:chr3:53508821-53508573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):174, 98

               
               
               Conread position:136-398
               
               
               Cow position:chr3:59621431-59621686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):170, 70

               
               
               Conread position:137-397
               
               
               Cow position:chr3:46901416-46901157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):164, 81

               
               
               Conread position:137-398
               
               
               Cow position:chr3:51604381-51604652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:138-276
               
               
               Cow position:chr3:44839079-44839216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:138-347
               
               
               Cow position:chr3:18426838-18427048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):168, 68

               
               
               Conread position:138-397
               
               
               Cow position:chr3:11606539-11606277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):167, 79

               
               
               Conread position:139-365
               
               
               Cow position:chr3:52634321-52634104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):167, 81

               
               
               Conread position:139-382
               
               
               Cow position:chr3:53256734-53256509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):166, 86

               
               
               Conread position:141-397
               
               
               Cow position:chr3:31850161-31850410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):147, 90

               
               
               Conread position:143-272
               
               
               Cow position:chr3:59147785-59147658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:143-397
               
               
               Cow position:chr3:57877773-57877529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):162, 79

               
               
               Conread position:144-262
               
               
               Cow position:chr3:75151215-75151333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-347
               
               
               Cow position:chr3:57038104-57038310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:144-365
               
               
               Cow position:chr3:27670644-27670409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:144-370
               
               
               Cow position:chr3:28555950-28556171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):166, 69

               
               
               Conread position:144-381
               
               
               Cow position:chr3:15682926-15683171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):79, 234

               
               
               Conread position:144-382
               
               
               Cow position:chr3:78201818-78201588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):161, 92

               
               
               Conread position:144-397
               
               
               Cow position:chr3:81470894-81471133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):162, 30

               
               
               Conread position:145-268
               
               
               Cow position:chr3:49232054-49231930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:145-398
               
               
               Cow position:chr3:55271825-55272083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):72, 85

               
               
               Conread position:152-365
               
               
               Cow position:chr3:68620717-68620927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):154, 43

               
               
               Conread position:153-379
               
               
               Cow position:chr3:26973230-26973458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):150, 101

               
               
               Conread position:157-397
               
               
               Cow position:chr3:64372936-64373193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:205-392
               
               
               Cow position:chr3:11705412-11705219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):75, 31

               
               
               Conread position:208-397
               
               
               Cow position:chr3:28258248-28258058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):99, 17

               
               
               Conread position:210-397
               
               
               Cow position:chr3:70402054-70401860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):26, 147

               
               
               Conread position:211-396
               
               
               Cow position:chr3:26874742-26874560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):95, 67

               
               
               Conread position:214-398
               
               
               Cow position:chr3:66883794-66883978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:221-371
               
               
               Cow position:chr3:25702200-25702352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):87, 23

               
               
               Conread position:221-386
               
               
               Cow position:chr3:46305593-46305434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):148, 54

               
               
               Conread position:222-397
               
               
               Cow position:chr3:21997648-21997825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 53

               
               
               Conread position:224-392
               
               
               Cow position:chr3:59630377-59630541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):82, 51

               
               
               Conread position:224-401
               
               
               Cow position:chr3:77006604-77006433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 43

               
               
               Conread position:225-391
               
               
               Cow position:chr3:49790674-49790843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 17

               
               
               Conread position:229-387
               
               
               Cow position:chr3:61467058-61467217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 50

               
               
               Conread position:230-370
               
               
               Cow position:chr3:61133772-61133629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:233-395
               
               
               Cow position:chr3:32457324-32457159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:235-398
               
               
               Cow position:chr3:66631223-66631390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:236-408
               
               
               Cow position:chr3:14263520-14263350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):65, 138

               
               
               Conread position:238-369
               
               
               Cow position:chr3:4086741-4086872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:238-391
               
               
               Cow position:chr3:61279034-61278880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):70, 135

               
               
               Conread position:240-396
               
               
               Cow position:chr3:30222314-30222154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:240-397
               
               
               Cow position:chr3:84175700-84175860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:241-401
               
               
               Cow position:chr3:54067916-54067756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):67, 11

               
               
               Conread position:242-398
               
               
               Cow position:chr3:36914179-36914012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:243-392
               
               
               Cow position:chr3:59828272-59828425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:243-396
               
               
               Cow position:chr3:13301730-13301886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):59, 54

               
               
               Conread position:243-396
               
               
               Cow position:chr3:56704200-56704357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:244-392
               
               
               Cow position:chr3:35299787-35299636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 113

               
               
               Conread position:244-397
               
               
               Cow position:chr3:54100606-54100763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-398
               
               
               Cow position:chr3:33329939-33329779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:245-392
               
               
               Cow position:chr3:5703292-5703146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):127, 70

               
               
               Conread position:245-397
               
               
               Cow position:chr3:51578208-51578360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):128, 12

               
               
               Conread position:245-407
               
               
               Cow position:chr3:8813993-8814160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:246-357
               
               
               Cow position:chr3:57067727-57067612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:246-397
               
               
               Cow position:chr3:2638042-2637889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):62, 29

               
               
               Conread position:246-397
               
               
               Cow position:chr3:73820253-73820405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):60, 38

               
               
               Conread position:246-398
               
               
               Cow position:chr3:51033482-51033328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):60, 20

               
               
               Conread position:246-401
               
               
               Cow position:chr3:53318519-53318360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:247-383
               
               
               Cow position:chr3:38691289-38691429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):26, 32

               
               
               Conread position:247-397
               
               
               Cow position:chr3:53046546-53046696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):59, 113

               
               
               Conread position:248-367
               
               
               Cow position:chr3:62186267-62186145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:248-397
               
               
               Cow position:chr3:74900527-74900677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:248-398
               
               
               Cow position:chr3:83215378-83215224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:249-395
               
               
               Cow position:chr3:63269336-63269188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 29

               
               
               Conread position:250-397
               
               
               Cow position:chr3:4319826-4319674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:250-398
               
               
               Cow position:chr3:7581605-7581755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):58, 13

               
               
               Conread position:250-398
               
               
               Cow position:chr3:15973679-15973528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 31

               
               
               Conread position:251-383
               
               
               Cow position:chr3:64010702-64010835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:251-391
               
               
               Cow position:chr3:11229252-11229396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:251-397
               
               
               Cow position:chr3:52863070-52863221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:251-397
               
               
               Cow position:chr3:55970619-55970470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 45

               
               
               Conread position:251-397
               
               
               Cow position:chr3:58317835-58317985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:252-359
               
               
               Cow position:chr3:17039726-17039614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:252-367
               
               
               Cow position:chr3:4167164-4167281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:252-381
               
               
               Cow position:chr3:18699999-18700132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-381
               
               
               Cow position:chr3:41366598-41366729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):56, 120

               
               
               Conread position:252-381
               
               
               Cow position:chr3:59947777-59947644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:252-381
               
               
               Cow position:chr3:61023911-61024044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-390
               
               
               Cow position:chr3:53875653-53875795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:252-391
               
               
               Cow position:chr3:70756530-70756672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):56, 132

               
               
               Conread position:252-395
               
               
               Cow position:chr3:9025974-9026119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 81

               
               
               Conread position:252-396
               
               
               Cow position:chr3:48900221-48900368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 107

               
               
               Conread position:252-396
               
               
               Cow position:chr3:75238569-75238421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr3:3656627-3656477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr3:15443617-15443765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr3:23203120-23203268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):54, 66

               
               
               Conread position:252-397
               
               
               Cow position:chr3:27976413-27976561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:252-397
               
               
               Cow position:chr3:31309242-31309391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr3:53270942-53270793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr3:65058807-65058663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:252-397
               
               
               Cow position:chr3:70334583-70334732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr3:79271599-79271749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr3:5366880-5366731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 95

               
               
               Conread position:252-398
               
               
               Cow position:chr3:6728218-6728368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr3:9663060-9663210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr3:21014844-21014996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr3:38783717-38783568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 8

               
               
               Conread position:252-398
               
               
               Cow position:chr3:49482603-49482754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:252-407
               
               
               Cow position:chr3:3556657-3556499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):50, 149

               
               
               Conread position:253-367
               
               
               Cow position:chr3:83199621-83199505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:253-389
               
               
               Cow position:chr3:65413166-65413307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:253-398
               
               
               Cow position:chr3:58134576-58134724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:254-396
               
               
               Cow position:chr3:35624436-35624581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:254-397
               
               
               Cow position:chr3:37041528-37041382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:254-398
               
               
               Cow position:chr3:53910218-53910071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:255-388
               
               
               Cow position:chr3:19793012-19792877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:255-397
               
               
               Cow position:chr3:23471351-23471496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:255-398
               
               
               Cow position:chr3:2518432-2518577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:256-371
               
               
               Cow position:chr3:59317809-59317692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:256-396
               
               
               Cow position:chr3:76267867-76268011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:256-397
               
               
               Cow position:chr3:20841767-20841910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):52, 10

               
               
               Conread position:256-398
               
               
               Cow position:chr3:26982167-26982020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:256-414
               
               
               Cow position:chr3:28902653-28902811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:257-397
               
               
               Cow position:chr3:48252991-48252848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:257-398
               
               
               Cow position:chr3:14552980-14552837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:257-464
               
               
               Cow position:chr3:52457018-52456812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):116, 43

               
               
               Conread position:258-397
               
               
               Cow position:chr3:15153797-15153654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:260-384
               
               
               Cow position:chr3:70402747-70402622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):46, 72

               
               
               Conread position:260-395
               
               
               Cow position:chr3:56948984-56949123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-396
               
               
               Cow position:chr3:55712544-55712404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr3:24935468-24935328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):46, 28

               
               
               Conread position:260-397
               
               
               Cow position:chr3:71423451-71423588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):48, 99

               
               
               Conread position:260-398
               
               
               Cow position:chr3:21642091-21641950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 98

               
               
               Conread position:260-398
               
               
               Cow position:chr3:57577800-57577659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:261-397
               
               
               Cow position:chr3:41863728-41863587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:261-397
               
               
               Cow position:chr3:69650786-69650926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:261-398
               
               
               Cow position:chr3:46792488-46792347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:262-397
               
               
               Cow position:chr3:8393449-8393313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):12, 89

               
               
               Conread position:263-398
               
               
               Cow position:chr3:56678249-56678389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:264-397
               
               
               Cow position:chr3:5365777-5365640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:267-397
               
               
               Cow position:chr3:1517415-1517549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:268-398
               
               
               Cow position:chr3:27696883-27697016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):18, 13

               
               
               Conread position:271-400
               
               
               Cow position:chr3:39873603-39873733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:272-397
               
               
               Cow position:chr3:57760590-57760461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:272-397
               
               
               Cow position:chr3:84137723-84137852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:273-397
               
               
               Cow position:chr3:15228732-15228860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:273-397
               
               
               Cow position:chr3:22871759-22871880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):100, 27

               
               
               Conread position:273-397
               
               
               Cow position:chr3:59000666-59000789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:273-397
               
               
               Cow position:chr3:73395207-73395080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:273-407
               
               
               Cow position:chr3:7566326-7566465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:275-397
               
               
               Cow position:chr3:51234007-51234131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):31, 97

               
               
               Conread position:275-397
               
               
               Cow position:chr3:55819839-55819721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):98, 37

               
               
               Conread position:275-401
               
               
               Cow position:chr3:18459439-18459569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:278-397
               
               
               Cow position:chr3:11292162-11292285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:278-397
               
               
               Cow position:chr3:34669647-34669764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):28, 94

               
               
               Conread position:289-397
               
               
               Cow position:chr3:81277393-81277505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:92-398
               
               
               Cow position:chr4:19324254-19323953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):212, 22

               
               
               Conread position:128-397
               
               
               Cow position:chr4:19098710-19098449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 36

               
               
               Conread position:130-387
               
               
               Cow position:chr4:38886855-38887119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):97, 171

               
               
               Conread position:133-391
               
               
               Cow position:chr4:21875033-21874788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):173, 75

               
               
               Conread position:136-232
               
               
               Cow position:chr4:19542345-19542249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-254
               
               
               Cow position:chr4:21801230-21801113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:136-264
               
               
               Cow position:chr4:49090297-49090167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:136-378
               
               
               Cow position:chr4:21532863-21533096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):9, 32

               
               
               Conread position:136-392
               
               
               Cow position:chr4:3397190-3396957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):229, 32

               
               
               Conread position:136-398
               
               
               Cow position:chr4:12904056-12903799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):231, 31

               
               
               Conread position:137-367
               
               
               Cow position:chr4:11512491-11512698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:137-371
               
               
               Cow position:chr4:30792202-30791975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):169, 53

               
               
               Conread position:137-375
               
               
               Cow position:chr4:69398638-69398859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:138-377
               
               
               Cow position:chr4:13520641-13520878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):168, 81

               
               
               Conread position:138-398
               
               
               Cow position:chr4:43865638-43865875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:139-391
               
               
               Cow position:chr4:45367960-45367725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):166, 35

               
               
               Conread position:140-367
               
               
               Cow position:chr4:7729200-7729426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 23

               
               
               Conread position:141-384
               
               
               Cow position:chr4:1184947-1184702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):85, 118

               
               
               Conread position:142-246
               
               
               Cow position:chr4:57421266-57421159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:143-268
               
               
               Cow position:chr4:28543122-28543246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):63, 24

               
               
               Conread position:144-260
               
               
               Cow position:chr4:13211433-13211315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:144-328
               
               
               Cow position:chr4:59337496-59337328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):164, 75

               
               
               Conread position:144-346
               
               
               Cow position:chr4:16644901-16645101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):158, 80

               
               
               Conread position:144-367
               
               
               Cow position:chr4:32272734-32272962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):72, 120

               
               
               Conread position:144-395
               
               
               Cow position:chr4:54854576-54854823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):161, 43

               
               
               Conread position:144-397
               
               
               Cow position:chr4:21174072-21173825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):121, 76

               
               
               Conread position:144-397
               
               
               Cow position:chr4:47349049-47348809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):84, 99

               
               
               Conread position:144-398
               
               
               Cow position:chr4:8947609-8947375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):229, 73

               
               
               Conread position:144-398
               
               
               Cow position:chr4:63095842-63096095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):164, 59

               
               
               Conread position:145-262
               
               
               Cow position:chr4:52268109-52268224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:149-257
               
               
               Cow position:chr4:27755030-27755138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:151-397
               
               
               Cow position:chr4:65649900-65650150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):103, 228

               
               
               Conread position:152-353
               
               
               Cow position:chr4:46449937-46449725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:152-395
               
               
               Cow position:chr4:11380504-11380265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):153, 54

               
               
               Conread position:154-396
               
               
               Cow position:chr4:50675937-50676189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):28, 208

               
               
               Conread position:177-397
               
               
               Cow position:chr4:41300802-41301013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):110, 29

               
               
               Conread position:177-398
               
               
               Cow position:chr4:58880766-58880982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):131, 89

               
               
               Conread position:199-395
               
               
               Cow position:chr4:65950834-65950637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):107, 76

               
               
               Conread position:202-397
               
               
               Cow position:chr4:44782553-44782355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:157
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):103, 165

               
               
               Conread position:205-367
               
               
               Cow position:chr4:53833343-53833169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:205-398
               
               
               Cow position:chr4:19321897-19322099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:212-397
               
               
               Cow position:chr4:46702491-46702678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):94, 66

               
               
               Conread position:214-398
               
               
               Cow position:chr4:9815182-9815368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):92, 60

               
               
               Conread position:218-397
               
               
               Cow position:chr4:54191252-54191070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):29, 37

               
               
               Conread position:221-371
               
               
               Cow position:chr4:23808110-23807956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:221-397
               
               
               Cow position:chr4:45636328-45636146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:230-401
               
               
               Cow position:chr4:19304497-19304320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:231-399
               
               
               Cow position:chr4:2021-1849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:236-397
               
               
               Cow position:chr4:51920689-51920524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:240-398
               
               
               Cow position:chr4:48902484-48902646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:241-386
               
               
               Cow position:chr4:51708205-51708056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:241-397
               
               
               Cow position:chr4:38358686-38358841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):67, 11

               
               
               Conread position:243-390
               
               
               Cow position:chr4:8083661-8083812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:244-365
               
               
               Cow position:chr4:30845508-30845384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-370
               
               
               Cow position:chr4:46761744-46761615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-382
               
               
               Cow position:chr4:65806032-65805890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:244-384
               
               
               Cow position:chr4:19561925-19561781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):29, 13

               
               
               Conread position:244-392
               
               
               Cow position:chr4:47280264-47280114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 54

               
               
               Conread position:244-395
               
               
               Cow position:chr4:51784317-51784162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:244-395
               
               
               Cow position:chr4:61313076-61313231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-396
               
               
               Cow position:chr4:16762590-16762745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):64, 17

               
               
               Conread position:244-397
               
               
               Cow position:chr4:20142775-20142926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):62, 83

               
               
               Conread position:244-397
               
               
               Cow position:chr4:45909841-45909997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):62, 45

               
               
               Conread position:244-398
               
               
               Cow position:chr4:18095536-18095689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 132

               
               
               Conread position:245-369
               
               
               Cow position:chr4:25802826-25802699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:245-371
               
               
               Cow position:chr4:54543527-54543657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:245-395
               
               
               Cow position:chr4:44613137-44612986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):114, 56

               
               
               Conread position:245-397
               
               
               Cow position:chr4:19542268-19542118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):57, 118

               
               
               Conread position:246-397
               
               
               Cow position:chr4:23444913-23445066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 32

               
               
               Conread position:246-397
               
               
               Cow position:chr4:27699165-27699012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):69, 5

               
               
               Conread position:246-397
               
               
               Cow position:chr4:32726358-32726204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:246-397
               
               
               Cow position:chr4:45582988-45583139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 113

               
               
               Conread position:246-398
               
               
               Cow position:chr4:23526828-23526673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:247-392
               
               
               Cow position:chr4:53819552-53819701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:247-397
               
               
               Cow position:chr4:15462117-15462273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:247-397
               
               
               Cow position:chr4:22546711-22546861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):68, 28

               
               
               Conread position:248-376
               
               
               Cow position:chr4:45483929-45483799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:248-388
               
               
               Cow position:chr4:10999582-10999726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):25, 31

               
               
               Conread position:248-392
               
               
               Cow position:chr4:16814516-16814367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:248-398
               
               
               Cow position:chr4:12901425-12901579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:249-398
               
               
               Cow position:chr4:45874333-45874487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:250-371
               
               
               Cow position:chr4:41780108-41780232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:250-388
               
               
               Cow position:chr4:14512427-14512569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:250-395
               
               
               Cow position:chr4:45775207-45775356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:250-397
               
               
               Cow position:chr4:12004343-12004198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):60, 16

               
               
               Conread position:250-398
               
               
               Cow position:chr4:17052462-17052614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:251-393
               
               
               Cow position:chr4:65265180-65265322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:251-396
               
               
               Cow position:chr4:508780-508928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:251-397
               
               
               Cow position:chr4:59378039-59377889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:251-398
               
               
               Cow position:chr4:570922-570771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:252-383
               
               
               Cow position:chr4:47230869-47231004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-383
               
               
               Cow position:chr4:47283884-47284019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-395
               
               
               Cow position:chr4:32561957-32561811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):58, 30

               
               
               Conread position:252-396
               
               
               Cow position:chr4:28836663-28836517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr4:33181673-33181524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr4:34383213-34383361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):50, 111

               
               
               Conread position:252-397
               
               
               Cow position:chr4:40995859-40995711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):49, 101

               
               
               Conread position:252-397
               
               
               Cow position:chr4:44772914-44773063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr4:45837499-45837648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr4:45862540-45862397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):121, 5

               
               
               Conread position:252-397
               
               
               Cow position:chr4:46455940-46456085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):53, 107

               
               
               Conread position:252-398
               
               
               Cow position:chr4:7847151-7847301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr4:22101136-22101286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr4:26959841-26959990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 30

               
               
               Conread position:252-398
               
               
               Cow position:chr4:45250099-45249949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr4:46883542-46883694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr4:47305206-47305056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-406
               
               
               Cow position:chr4:19199158-19199315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 155

               
               
               Conread position:253-392
               
               
               Cow position:chr4:19496624-19496479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:253-396
               
               
               Cow position:chr4:45563874-45563722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:253-397
               
               
               Cow position:chr4:19256817-19256675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:253-397
               
               
               Cow position:chr4:37675742-37675598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 108

               
               
               Conread position:253-398
               
               
               Cow position:chr4:19539109-19539258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:254-397
               
               
               Cow position:chr4:52779977-52779830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:254-398
               
               
               Cow position:chr4:47038894-47038746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:255-396
               
               
               Cow position:chr4:12135803-12135946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:255-396
               
               
               Cow position:chr4:12591088-12591233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:256-380
               
               
               Cow position:chr4:52823277-52823404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:256-397
               
               
               Cow position:chr4:32693913-32693767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:256-398
               
               
               Cow position:chr4:12127514-12127660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:256-398
               
               
               Cow position:chr4:22713369-22713514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 76

               
               
               Conread position:260-387
               
               
               Cow position:chr4:45261927-45262058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-392
               
               
               Cow position:chr4:61608844-61608980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr4:19456566-19456707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr4:20124845-20124988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr4:43542357-43542491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):113, 52

               
               
               Conread position:260-397
               
               
               Cow position:chr4:45626507-45626647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr4:50687745-50687881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):113, 55

               
               
               Conread position:261-395
               
               
               Cow position:chr4:61346136-61346001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:261-397
               
               
               Cow position:chr4:45706158-45706023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):45, 20

               
               
               Conread position:262-398
               
               
               Cow position:chr4:7698384-7698245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 76

               
               
               Conread position:266-397
               
               
               Cow position:chr4:65175030-65175165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:270-397
               
               
               Cow position:chr4:34369339-34369470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:272-395
               
               
               Cow position:chr4:10905361-10905482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):101, 45

               
               
               Conread position:272-396
               
               
               Cow position:chr4:67393200-67393072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:278-397
               
               
               Cow position:chr4:5460759-5460881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):30, 11

               
               
               Conread position:293-397
               
               
               Cow position:chr4:65432238-65432130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:124-381
               
               
               Cow position:chr5:42622898-42623148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):178, 81

               
               
               Conread position:124-397
               
               
               Cow position:chr5:58856390-58856116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):182, 63

               
               
               Conread position:128-371
               
               
               Cow position:chr5:46703012-46702761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):15, 44

               
               
               Conread position:128-396
               
               
               Cow position:chr5:4709858-4710137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):78, 7

               
               
               Conread position:130-397
               
               
               Cow position:chr5:2851885-2851608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:132-359
               
               
               Cow position:chr5:29860605-29860384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):176, 12

               
               
               Conread position:133-268
               
               
               Cow position:chr5:9353689-9353825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:133-285
               
               
               Cow position:chr5:68594168-68594022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):148, 81

               
               
               Conread position:135-258
               
               
               Cow position:chr5:51018938-51018819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:136-367
               
               
               Cow position:chr5:54067771-54067998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):151, 83

               
               
               Conread position:136-388
               
               
               Cow position:chr5:38382546-38382777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):170, 70

               
               
               Conread position:136-392
               
               
               Cow position:chr5:54311586-54311354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):237, 70

               
               
               Conread position:136-396
               
               
               Cow position:chr5:59115662-59115400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):63, 52

               
               
               Conread position:136-397
               
               
               Cow position:chr5:51935450-51935203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):237, 84

               
               
               Conread position:136-397
               
               
               Cow position:chr5:54060573-54060291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):73, 34

               
               
               Conread position:136-399
               
               
               Cow position:chr5:55019553-55019304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):170, 27

               
               
               Conread position:137-392
               
               
               Cow position:chr5:49259759-49260018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):87, 53

               
               
               Conread position:137-397
               
               
               Cow position:chr5:30949627-30949902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):84, 29

               
               
               Conread position:137-399
               
               
               Cow position:chr5:55062205-55061938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):139, 13

               
               
               Conread position:138-398
               
               
               Cow position:chr5:28957353-28957602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):234, 29

               
               
               Conread position:138-398
               
               
               Cow position:chr5:35513495-35513227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):73, 82

               
               
               Conread position:141-232
               
               
               Cow position:chr5:26476525-26476616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:81
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:142-373
               
               
               Cow position:chr5:37378127-37377890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:143-398
               
               
               Cow position:chr5:35647599-35647355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):10, 77

               
               
               Conread position:144-264
               
               
               Cow position:chr5:40640223-40640103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-268
               
               
               Cow position:chr5:9368339-9368461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:144-309
               
               
               Cow position:chr5:5028978-5028819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:144-390
               
               
               Cow position:chr5:40559899-40559653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):52, 76

               
               
               Conread position:144-397
               
               
               Cow position:chr5:63656748-63656490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):74, 27

               
               
               Conread position:144-398
               
               
               Cow position:chr5:3205079-3204846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):159, 25

               
               
               Conread position:144-398
               
               
               Cow position:chr5:9859155-9859407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):128, 75

               
               
               Conread position:145-395
               
               
               Cow position:chr5:27293628-27293869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):157, 74

               
               
               Conread position:145-397
               
               
               Cow position:chr5:45419868-45420124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:146-397
               
               
               Cow position:chr5:59872816-59873069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):162, 57

               
               
               Conread position:148-334
               
               
               Cow position:chr5:32262054-32262243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 101

               
               
               Conread position:150-336
               
               
               Cow position:chr5:17569287-17569102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):60, 17

               
               
               Conread position:151-397
               
               
               Cow position:chr5:34301159-34300932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:151-398
               
               
               Cow position:chr5:38689275-38689526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):102, 112

               
               
               Conread position:200-360
               
               
               Cow position:chr5:52063156-52063317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:200-395
               
               
               Cow position:chr5:23678494-23678684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:202-397
               
               
               Cow position:chr5:60908876-60908679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):104, 149

               
               
               Conread position:207-392
               
               
               Cow position:chr5:54767701-54767890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 168

               
               
               Conread position:208-379
               
               
               Cow position:chr5:70353787-70353953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):85, 51

               
               
               Conread position:208-398
               
               
               Cow position:chr5:63426800-63426993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):107, 53

               
               
               Conread position:209-395
               
               
               Cow position:chr5:55129548-55129358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:213-397
               
               
               Cow position:chr5:54086740-54086554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):17, 26

               
               
               Conread position:222-398
               
               
               Cow position:chr5:50526457-50526274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:224-398
               
               
               Cow position:chr5:1087016-1087187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):140, 54

               
               
               Conread position:225-387
               
               
               Cow position:chr5:36671789-36671626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):90, 31

               
               
               Conread position:225-398
               
               
               Cow position:chr5:45273322-45273489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 29

               
               
               Conread position:226-388
               
               
               Cow position:chr5:41294264-41294103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):61, 23

               
               
               Conread position:229-391
               
               
               Cow position:chr5:12738375-12738536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):77, 49

               
               
               Conread position:231-397
               
               
               Cow position:chr5:49685093-49685258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 29

               
               
               Conread position:231-398
               
               
               Cow position:chr5:58446989-58446819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):75, 52

               
               
               Conread position:232-393
               
               
               Cow position:chr5:26476836-26477000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):74, 153

               
               
               Conread position:234-397
               
               
               Cow position:chr5:26723626-26723461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):72, 40

               
               
               Conread position:234-398
               
               
               Cow position:chr5:57489773-57489933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 41

               
               
               Conread position:238-398
               
               
               Cow position:chr5:14473228-14473392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):57, 10

               
               
               Conread position:240-397
               
               
               Cow position:chr5:46322628-46322785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:241-396
               
               
               Cow position:chr5:16939422-16939580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):67, 11

               
               
               Conread position:241-398
               
               
               Cow position:chr5:32394772-32394611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):16, 39

               
               
               Conread position:242-386
               
               
               Cow position:chr5:44752135-44752284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-397
               
               
               Cow position:chr5:458660-458502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:242-397
               
               
               Cow position:chr5:51490075-51490232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 134

               
               
               Conread position:243-396
               
               
               Cow position:chr5:59325666-59325829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:244-384
               
               
               Cow position:chr5:16185548-16185404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-384
               
               
               Cow position:chr5:45037419-45037276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):64, 45

               
               
               Conread position:244-397
               
               
               Cow position:chr5:43992494-43992337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr5:52108100-52108255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 37

               
               
               Conread position:244-397
               
               
               Cow position:chr5:58555310-58555150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:245-384
               
               
               Cow position:chr5:20882454-20882598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:245-397
               
               
               Cow position:chr5:3743487-3743335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):57, 29

               
               
               Conread position:245-397
               
               
               Cow position:chr5:17566271-17566425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):61, 36

               
               
               Conread position:246-396
               
               
               Cow position:chr5:41981536-41981386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):62, 113

               
               
               Conread position:246-397
               
               
               Cow position:chr5:18062150-18062306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:246-397
               
               
               Cow position:chr5:35969700-35969546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:246-397
               
               
               Cow position:chr5:57062370-57062516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):127, 41

               
               
               Conread position:246-398
               
               
               Cow position:chr5:5760149-5760301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):123, 9

               
               
               Conread position:247-396
               
               
               Cow position:chr5:56361960-56361810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):56, 106

               
               
               Conread position:247-397
               
               
               Cow position:chr5:29771695-29771541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:247-397
               
               
               Cow position:chr5:29828211-29828059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:248-381
               
               
               Cow position:chr5:49821591-49821459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:248-392
               
               
               Cow position:chr5:9089862-9090005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):125, 62

               
               
               Conread position:248-397
               
               
               Cow position:chr5:57230173-57230325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):58, 30

               
               
               Conread position:249-397
               
               
               Cow position:chr5:43844498-43844650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:249-398
               
               
               Cow position:chr5:47316810-47316962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:249-401
               
               
               Cow position:chr5:66972594-66972438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:250-396
               
               
               Cow position:chr5:28230328-28230176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:250-397
               
               
               Cow position:chr5:11769432-11769284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:250-397
               
               
               Cow position:chr5:14903905-14904056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:251-397
               
               
               Cow position:chr5:29352965-29353112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:251-397
               
               
               Cow position:chr5:63234667-63234811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:251-398
               
               
               Cow position:chr5:58519251-58519404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:252-377
               
               
               Cow position:chr5:53980592-53980723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-392
               
               
               Cow position:chr5:35246948-35247094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-396
               
               
               Cow position:chr5:51053488-51053639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:252-397
               
               
               Cow position:chr5:2469050-2469194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):120, 64

               
               
               Conread position:252-397
               
               
               Cow position:chr5:7012689-7012834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):49, 122

               
               
               Conread position:252-397
               
               
               Cow position:chr5:20994924-20995079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr5:37808502-37808650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):54, 11

               
               
               Conread position:252-397
               
               
               Cow position:chr5:39937277-39937129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr5:55756253-55756407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr5:61784565-61784714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr5:64523704-64523850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:252-398
               
               
               Cow position:chr5:6503719-6503869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr5:7177312-7177163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 11

               
               
               Conread position:252-398
               
               
               Cow position:chr5:26497520-26497665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):121, 48

               
               
               Conread position:252-398
               
               
               Cow position:chr5:36868897-36868749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr5:60514866-60515016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):36, 78

               
               
               Conread position:252-404
               
               
               Cow position:chr5:52001461-52001617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-406
               
               
               Cow position:chr5:4226508-4226352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 37

               
               
               Conread position:254-379
               
               
               Cow position:chr5:52723733-52723605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):56, 108

               
               
               Conread position:254-387
               
               
               Cow position:chr5:57526769-57526901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):119, 61

               
               
               Conread position:254-397
               
               
               Cow position:chr5:9369113-9369258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:254-397
               
               
               Cow position:chr5:44163208-44163356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):41, 34

               
               
               Conread position:254-398
               
               
               Cow position:chr5:1247423-1247278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 97

               
               
               Conread position:254-398
               
               
               Cow position:chr5:50723206-50723058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:255-398
               
               
               Cow position:chr5:53710530-53710677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:256-397
               
               
               Cow position:chr5:44796575-44796720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:256-397
               
               
               Cow position:chr5:73167854-73167998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 25

               
               
               Conread position:257-398
               
               
               Cow position:chr5:38739246-38739391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 32

               
               
               Conread position:258-391
               
               
               Cow position:chr5:15479283-15479145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:260-392
               
               
               Cow position:chr5:59627254-59627118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:260-395
               
               
               Cow position:chr5:25597987-25597848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr5:50101220-50101363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-398
               
               
               Cow position:chr5:11562567-11562711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:261-397
               
               
               Cow position:chr5:50575936-50575797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 59

               
               
               Conread position:261-401
               
               
               Cow position:chr5:41885069-41884928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:262-395
               
               
               Cow position:chr5:36839109-36838975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:263-397
               
               
               Cow position:chr5:2309407-2309543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):42, 21

               
               
               Conread position:263-407
               
               
               Cow position:chr5:35126206-35126059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):32, 138

               
               
               Conread position:264-399
               
               
               Cow position:chr5:12300061-12299922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 26

               
               
               Conread position:266-397
               
               
               Cow position:chr5:4280596-4280459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:267-398
               
               
               Cow position:chr5:56287355-56287490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:271-397
               
               
               Cow position:chr5:6528828-6528696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:271-397
               
               
               Cow position:chr5:63987303-63987432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:272-397
               
               
               Cow position:chr5:47323604-47323476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:272-397
               
               
               Cow position:chr5:54350219-54350348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:273-398
               
               
               Cow position:chr5:34463439-34463566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:274-397
               
               
               Cow position:chr5:49501684-49501811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:276-397
               
               
               Cow position:chr5:4267808-4267683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:281-398
               
               
               Cow position:chr5:48867331-48867452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:89-367
               
               
               Cow position:chr6:53513689-53513964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):213, 138

               
               
               Conread position:120-397
               
               
               Cow position:chr6:7568423-7568150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):188, 39

               
               
               Conread position:122-397
               
               
               Cow position:chr6:30974334-30974073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):251, 98

               
               
               Conread position:129-361
               
               
               Cow position:chr6:416430-416189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:130-218
               
               
               Cow position:chr6:23173298-23173209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:90
               
               
               Alignm identity:78
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:133-392
               
               
               Cow position:chr6:21066602-21066852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):173, 41

               
               
               Conread position:135-392
               
               
               Cow position:chr6:41936963-41937241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:136-244
               
               
               Cow position:chr6:37080012-37079902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:136-326
               
               
               Cow position:chr6:59994269-59994083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:136-387
               
               
               Cow position:chr6:32809559-32809319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:136-392
               
               
               Cow position:chr6:54349976-54349726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):170, 82

               
               
               Conread position:136-397
               
               
               Cow position:chr6:51969349-51969104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):238, 12

               
               
               Conread position:137-366
               
               
               Cow position:chr6:603803-603576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):164, 77

               
               
               Conread position:137-398
               
               
               Cow position:chr6:66531526-66531795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):69, 212

               
               
               Conread position:138-232
               
               
               Cow position:chr6:23353797-23353702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:81
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:138-398
               
               
               Cow position:chr6:2153312-2153573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):91, 9

               
               
               Conread position:141-381
               
               
               Cow position:chr6:46997526-46997749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):164, 30

               
               
               Conread position:143-384
               
               
               Cow position:chr6:20431750-20431508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):172, 83

               
               
               Conread position:144-258
               
               
               Cow position:chr6:61544149-61544261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:144-339
               
               
               Cow position:chr6:48885272-48885490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:144-361
               
               
               Cow position:chr6:35964247-35964471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:144-388
               
               
               Cow position:chr6:14958063-14958305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):111, 60

               
               
               Conread position:144-395
               
               
               Cow position:chr6:35103051-35103299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):158, 80

               
               
               Conread position:144-398
               
               
               Cow position:chr6:20606225-20605986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):161, 27

               
               
               Conread position:145-380
               
               
               Cow position:chr6:107120-107381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:146-371
               
               
               Cow position:chr6:62220684-62220461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):138, 130

               
               
               Conread position:146-386
               
               
               Cow position:chr6:60238829-60239069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):160, 87

               
               
               Conread position:146-397
               
               
               Cow position:chr6:47339092-47339329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):160, 62

               
               
               Conread position:159-386
               
               
               Cow position:chr6:23656503-23656735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):51, 133

               
               
               Conread position:200-392
               
               
               Cow position:chr6:139417-139613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):53, 28

               
               
               Conread position:200-392
               
               
               Cow position:chr6:35896128-35896318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:202-395
               
               
               Cow position:chr6:19131656-19131459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:209-396
               
               
               Cow position:chr6:60451643-60451455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):96, 13

               
               
               Conread position:209-397
               
               
               Cow position:chr6:18048808-18048997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):62, 35

               
               
               Conread position:209-398
               
               
               Cow position:chr6:47799510-47799319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:211-398
               
               
               Cow position:chr6:54990783-54990975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:212-397
               
               
               Cow position:chr6:582056-582245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):44, 140

               
               
               Conread position:224-398
               
               
               Cow position:chr6:61128753-61128931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:225-397
               
               
               Cow position:chr6:37783606-37783427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:227-348
               
               
               Cow position:chr6:50882780-50882658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):79, 46

               
               
               Conread position:227-397
               
               
               Cow position:chr6:35993782-35993611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):76, 51

               
               
               Conread position:230-382
               
               
               Cow position:chr6:19507990-19508146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:237-398
               
               
               Cow position:chr6:12091803-12091967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 9

               
               
               Conread position:238-357
               
               
               Cow position:chr6:3447919-3447798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 37

               
               
               Conread position:238-396
               
               
               Cow position:chr6:21235233-21235070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:241-374
               
               
               Cow position:chr6:57467782-57467647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 11

               
               
               Conread position:241-397
               
               
               Cow position:chr6:17997134-17997292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 27

               
               
               Conread position:242-397
               
               
               Cow position:chr6:67214933-67214776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):59, 10

               
               
               Conread position:244-371
               
               
               Cow position:chr6:35702159-35702291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:244-391
               
               
               Cow position:chr6:34569589-34569440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):62, 19

               
               
               Conread position:244-396
               
               
               Cow position:chr6:49096270-49096423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):59, 116

               
               
               Conread position:244-397
               
               
               Cow position:chr6:4691792-4691948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr6:48469184-48469027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:244-412
               
               
               Cow position:chr6:36643311-36643480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:245-385
               
               
               Cow position:chr6:37603749-37603603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:245-387
               
               
               Cow position:chr6:5095359-5095505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:246-398
               
               
               Cow position:chr6:67456900-67456744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:247-396
               
               
               Cow position:chr6:38441352-38441203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 11

               
               
               Conread position:248-397
               
               
               Cow position:chr6:32453560-32453412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):62, 30

               
               
               Conread position:248-397
               
               
               Cow position:chr6:56986471-56986621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):67, 112

               
               
               Conread position:248-398
               
               
               Cow position:chr6:55502946-55502792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:248-410
               
               
               Cow position:chr6:19045801-19045637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):60, 9

               
               
               Conread position:249-397
               
               
               Cow position:chr6:16700430-16700288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):124, 63

               
               
               Conread position:250-396
               
               
               Cow position:chr6:15447020-15447170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:250-396
               
               
               Cow position:chr6:17794586-17794736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:250-397
               
               
               Cow position:chr6:15243012-15242861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 23

               
               
               Conread position:250-398
               
               
               Cow position:chr6:43134762-43134913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):60, 8

               
               
               Conread position:251-392
               
               
               Cow position:chr6:13367462-13367317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:251-397
               
               
               Cow position:chr6:7801223-7801365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:251-397
               
               
               Cow position:chr6:40032367-40032218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 118

               
               
               Conread position:251-397
               
               
               Cow position:chr6:53841329-53841479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:252-372
               
               
               Cow position:chr6:35984961-35985084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-381
               
               
               Cow position:chr6:58076569-58076436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-396
               
               
               Cow position:chr6:19695982-19695836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 110

               
               
               Conread position:252-396
               
               
               Cow position:chr6:35181081-35181229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr6:5330587-5330439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):56, 45

               
               
               Conread position:252-397
               
               
               Cow position:chr6:51530012-51530163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr6:69153585-69153440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:252-398
               
               
               Cow position:chr6:4468939-4468795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):120, 48

               
               
               Conread position:252-398
               
               
               Cow position:chr6:14914060-14914209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 131

               
               
               Conread position:252-398
               
               
               Cow position:chr6:18447342-18447490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 99

               
               
               Conread position:252-398
               
               
               Cow position:chr6:48379438-48379588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:252-401
               
               
               Cow position:chr6:21467092-21467241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):54, 109

               
               
               Conread position:252-407
               
               
               Cow position:chr6:58304589-58304432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):60, 26

               
               
               Conread position:252-421
               
               
               Cow position:chr6:28852149-28851977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):52, 149

               
               
               Conread position:253-379
               
               
               Cow position:chr6:15974349-15974477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):53, 102

               
               
               Conread position:253-381
               
               
               Cow position:chr6:62478695-62478827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:253-397
               
               
               Cow position:chr6:39093925-39093776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):15, 43

               
               
               Conread position:254-391
               
               
               Cow position:chr6:6060397-6060539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:254-396
               
               
               Cow position:chr6:21514434-21514580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:254-397
               
               
               Cow position:chr6:37692921-37692778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:254-397
               
               
               Cow position:chr6:54867691-54867544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:254-398
               
               
               Cow position:chr6:57079599-57079449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:255-371
               
               
               Cow position:chr6:35654377-35654496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:256-397
               
               
               Cow position:chr6:2585114-2584969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:256-398
               
               
               Cow position:chr6:44867370-44867517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:257-397
               
               
               Cow position:chr6:60740185-60740041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:258-391
               
               
               Cow position:chr6:67323479-67323342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:260-385
               
               
               Cow position:chr6:15058544-15058415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-392
               
               
               Cow position:chr6:64432106-64431969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-398
               
               
               Cow position:chr6:33150126-33150266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:260-398
               
               
               Cow position:chr6:37149357-37149215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:261-397
               
               
               Cow position:chr6:54127649-54127786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):13, 18

               
               
               Conread position:262-391
               
               
               Cow position:chr6:60118313-60118183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:262-398
               
               
               Cow position:chr6:10039889-10039749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:263-397
               
               
               Cow position:chr6:10176137-10176275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:264-397
               
               
               Cow position:chr6:42565851-42565715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):44, 32

               
               
               Conread position:266-390
               
               
               Cow position:chr6:16352192-16352320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:266-397
               
               
               Cow position:chr6:67805853-67805988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:271-397
               
               
               Cow position:chr6:15937699-15937828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 7

               
               
               Conread position:272-397
               
               
               Cow position:chr6:37395244-37395374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:286-396
               
               
               Cow position:chr6:61142420-61142535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:123-367
               
               
               Cow position:chr7:64235962-64236201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):8, 75

               
               
               Conread position:132-231
               
               
               Cow position:chr7:10945042-10944944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:134-232
               
               
               Cow position:chr7:23546406-23546306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:136-220
               
               
               Cow position:chr7:30666857-30666773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:77
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-258
               
               
               Cow position:chr7:58926363-58926241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-266
               
               
               Cow position:chr7:1804479-1804611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:136-395
               
               
               Cow position:chr7:15567042-15566783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):152, 34

               
               
               Conread position:136-396
               
               
               Cow position:chr7:6713825-6713549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:137-348
               
               
               Cow position:chr7:3886861-3886645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 30

               
               
               Conread position:138-342
               
               
               Cow position:chr7:57280399-57280605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 20

               
               
               Conread position:138-365
               
               
               Cow position:chr7:41257753-41257968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):172, 29

               
               
               Conread position:143-396
               
               
               Cow position:chr7:45331814-45331569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):165, 24

               
               
               Conread position:144-380
               
               
               Cow position:chr7:27283949-27283722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):224, 79

               
               
               Conread position:144-398
               
               
               Cow position:chr7:24872808-24873067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 147

               
               
               Conread position:144-398
               
               
               Cow position:chr7:58923666-58923426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):162, 62

               
               
               Conread position:145-356
               
               
               Cow position:chr7:8088620-8088826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):153, 121

               
               
               Conread position:145-397
               
               
               Cow position:chr7:36774639-36774397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):160, 75

               
               
               Conread position:146-386
               
               
               Cow position:chr7:5201390-5201637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:148-367
               
               
               Cow position:chr7:147681-147474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):185, 127

               
               
               Conread position:172-339
               
               
               Cow position:chr7:45738883-45738717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:177-386
               
               
               Cow position:chr7:11759869-11759657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:199-397
               
               
               Cow position:chr7:26485798-26485603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 99

               
               
               Conread position:200-397
               
               
               Cow position:chr7:8289682-8289875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):26, 79

               
               
               Conread position:205-371
               
               
               Cow position:chr7:34005183-34005017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):101, 61

               
               
               Conread position:213-398
               
               
               Cow position:chr7:3256124-3256317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:221-381
               
               
               Cow position:chr7:6271488-6271328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 25

               
               
               Conread position:222-396
               
               
               Cow position:chr7:168462-168636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):84, 21

               
               
               Conread position:222-398
               
               
               Cow position:chr7:40744980-40744803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):84, 51

               
               
               Conread position:223-397
               
               
               Cow position:chr7:23636908-23636735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):83, 23

               
               
               Conread position:224-386
               
               
               Cow position:chr7:2404415-2404259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):37, 52

               
               
               Conread position:224-397
               
               
               Cow position:chr7:17816949-17816778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):82, 42

               
               
               Conread position:224-397
               
               
               Cow position:chr7:50858160-50857981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:226-397
               
               
               Cow position:chr7:1792246-1792419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):82, 23

               
               
               Conread position:226-397
               
               
               Cow position:chr7:22651632-22651798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 56

               
               
               Conread position:226-398
               
               
               Cow position:chr7:15739382-15739557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):37, 14

               
               
               Conread position:227-397
               
               
               Cow position:chr7:41464669-41464500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 62

               
               
               Conread position:228-396
               
               
               Cow position:chr7:20176507-20176674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:235-398
               
               
               Cow position:chr7:14150408-14150241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:237-397
               
               
               Cow position:chr7:14524670-14524508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 24

               
               
               Conread position:243-397
               
               
               Cow position:chr7:11015869-11015711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:243-398
               
               
               Cow position:chr7:47776049-47775889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:244-396
               
               
               Cow position:chr7:50900499-50900658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 46

               
               
               Conread position:244-397
               
               
               Cow position:chr7:24461137-24460980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr7:40067846-40067690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:244-401
               
               
               Cow position:chr7:25511935-25512099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:245-392
               
               
               Cow position:chr7:20051286-20051438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:245-397
               
               
               Cow position:chr7:57258838-57258994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:246-392
               
               
               Cow position:chr7:4812192-4812050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):127, 28

               
               
               Conread position:246-397
               
               
               Cow position:chr7:9137022-9136867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:247-397
               
               
               Cow position:chr7:45158300-45158151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):126, 61

               
               
               Conread position:248-371
               
               
               Cow position:chr7:7475931-7476057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:248-397
               
               
               Cow position:chr7:37023109-37022957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:249-354
               
               
               Cow position:chr7:48900742-48900633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:249-397
               
               
               Cow position:chr7:33386101-33385951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:250-371
               
               
               Cow position:chr7:6077303-6077427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:250-397
               
               
               Cow position:chr7:9161495-9161647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:250-397
               
               
               Cow position:chr7:46823848-46823699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):58, 16

               
               
               Conread position:252-382
               
               
               Cow position:chr7:25263546-25263412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-382
               
               
               Cow position:chr7:43450719-43450585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-384
               
               
               Cow position:chr7:10945525-10945389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-384
               
               
               Cow position:chr7:35754850-35754716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):51, 105

               
               
               Conread position:252-385
               
               
               Cow position:chr7:27290321-27290458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-391
               
               
               Cow position:chr7:39093748-39093891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-396
               
               
               Cow position:chr7:24927846-24927993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:252-396
               
               
               Cow position:chr7:64135290-64135437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:252-396
               
               
               Cow position:chr7:65615946-65615798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr7:13067335-13067186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr7:19414273-19414422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr7:40308342-40308490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:252-397
               
               
               Cow position:chr7:51019955-51019807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):58, 6

               
               
               Conread position:252-397
               
               
               Cow position:chr7:51685192-51685043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr7:58800345-58800198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):68, 22

               
               
               Conread position:252-397
               
               
               Cow position:chr7:68857410-68857557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 120

               
               
               Conread position:252-398
               
               
               Cow position:chr7:18388221-18388371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr7:23678103-23677954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 26

               
               
               Conread position:253-398
               
               
               Cow position:chr7:37455495-37455346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:253-398
               
               
               Cow position:chr7:56347648-56347797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:253-398
               
               
               Cow position:chr7:64228715-64228864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:254-398
               
               
               Cow position:chr7:62603353-62603209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):54, 126

               
               
               Conread position:255-397
               
               
               Cow position:chr7:53653158-53653012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:256-396
               
               
               Cow position:chr7:11549836-11549696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:256-397
               
               
               Cow position:chr7:41745290-41745436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:256-397
               
               
               Cow position:chr7:48406320-48406466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:256-397
               
               
               Cow position:chr7:65325581-65325725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):49, 106

               
               
               Conread position:256-398
               
               
               Cow position:chr7:39947075-39947221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:256-398
               
               
               Cow position:chr7:40710302-40710155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):52, 129

               
               
               Conread position:257-396
               
               
               Cow position:chr7:46051830-46051685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:258-384
               
               
               Cow position:chr7:30012004-30011873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:258-397
               
               
               Cow position:chr7:13963385-13963240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:258-397
               
               
               Cow position:chr7:16022467-16022324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:258-397
               
               
               Cow position:chr7:52784632-52784771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 96

               
               
               Conread position:260-379
               
               
               Cow position:chr7:36248267-36248145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:260-392
               
               
               Cow position:chr7:33104328-33104196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):56, 23

               
               
               Conread position:260-393
               
               
               Cow position:chr7:35286470-35286607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr7:2894896-2894756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr7:38429544-38429683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:261-389
               
               
               Cow position:chr7:40414828-40414960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:261-397
               
               
               Cow position:chr7:29505284-29505144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:261-397
               
               
               Cow position:chr7:48563309-48563445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:262-396
               
               
               Cow position:chr7:19466083-19466220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:262-398
               
               
               Cow position:chr7:59558015-59558147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):6, 28

               
               
               Conread position:263-392
               
               
               Cow position:chr7:52718472-52718601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):43, 78

               
               
               Conread position:264-397
               
               
               Cow position:chr7:24220835-24220697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:266-379
               
               
               Cow position:chr7:11884117-11884232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 109

               
               
               Conread position:266-397
               
               
               Cow position:chr7:3336392-3336521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):107, 40

               
               
               Conread position:266-397
               
               
               Cow position:chr7:8089329-8089194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 85

               
               
               Conread position:267-397
               
               
               Cow position:chr7:11513553-11513687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:271-397
               
               
               Cow position:chr7:23568577-23568706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):34, 91

               
               
               Conread position:272-396
               
               
               Cow position:chr7:68540442-68540570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:278-397
               
               
               Cow position:chr7:33914123-33914000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:282-397
               
               
               Cow position:chr7:49630325-49630206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:92-398
               
               
               Cow position:chr8:39173953-39174246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):214, 35

               
               
               Conread position:120-395
               
               
               Cow position:chr8:38595959-38596221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):177, 23

               
               
               Conread position:121-261
               
               
               Cow position:chr8:48010343-48010482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:128-383
               
               
               Cow position:chr8:22999887-22999623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):92, 226

               
               
               Conread position:132-244
               
               
               Cow position:chr8:36672505-36672394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:135-258
               
               
               Cow position:chr8:36719053-36718935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:136-371
               
               
               Cow position:chr8:51480348-51480587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):172, 41

               
               
               Conread position:136-397
               
               
               Cow position:chr8:20837366-20837122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):170, 83

               
               
               Conread position:137-395
               
               
               Cow position:chr8:24428534-24428807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):69, 202

               
               
               Conread position:137-397
               
               
               Cow position:chr8:53642182-53642436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):132, 95

               
               
               Conread position:138-230
               
               
               Cow position:chr8:10639953-10639861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:81
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:138-268
               
               
               Cow position:chr8:9706053-9705921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:138-396
               
               
               Cow position:chr8:20283087-20282844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):133, 68

               
               
               Conread position:141-398
               
               
               Cow position:chr8:21083024-21083294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):22, 174

               
               
               Conread position:144-295
               
               
               Cow position:chr8:20410796-20410939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:144-387
               
               
               Cow position:chr8:55503037-55502792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):80, 97

               
               
               Conread position:144-397
               
               
               Cow position:chr8:10764745-10764992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):229, 25

               
               
               Conread position:144-397
               
               
               Cow position:chr8:45127443-45127705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:144-397
               
               
               Cow position:chr8:47501058-47500803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):162, 105

               
               
               Conread position:144-397
               
               
               Cow position:chr8:48956198-48955940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):113, 21

               
               
               Conread position:145-395
               
               
               Cow position:chr8:18647111-18647358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):73, 22

               
               
               Conread position:151-355
               
               
               Cow position:chr8:36126342-36126133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:172-381
               
               
               Cow position:chr8:14109616-14109404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):134, 109

               
               
               Conread position:200-371
               
               
               Cow position:chr8:11148439-11148615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):44, 81

               
               
               Conread position:209-397
               
               
               Cow position:chr8:31762729-31762538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):30, 154

               
               
               Conread position:209-403
               
               
               Cow position:chr8:17167758-17167562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):97, 64

               
               
               Conread position:217-397
               
               
               Cow position:chr8:26304210-26304393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):15, 11

               
               
               Conread position:218-371
               
               
               Cow position:chr8:43985739-43985896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):56, 73

               
               
               Conread position:218-398
               
               
               Cow position:chr8:36829674-36829857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):97, 63

               
               
               Conread position:221-397
               
               
               Cow position:chr8:18730624-18730445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 23

               
               
               Conread position:223-392
               
               
               Cow position:chr8:60595029-60594857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):83, 55

               
               
               Conread position:223-397
               
               
               Cow position:chr8:11606498-11606324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):150, 23

               
               
               Conread position:226-407
               
               
               Cow position:chr8:36490039-36489858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):74, 16

               
               
               Conread position:227-398
               
               
               Cow position:chr8:45126068-45126238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):81, 36

               
               
               Conread position:228-377
               
               
               Cow position:chr8:54147838-54147682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:229-397
               
               
               Cow position:chr8:60485378-60485204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:229-398
               
               
               Cow position:chr8:36729831-36729666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):144, 60

               
               
               Conread position:232-397
               
               
               Cow position:chr8:9468507-9468344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):141, 67

               
               
               Conread position:233-397
               
               
               Cow position:chr8:47462025-47461856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:238-390
               
               
               Cow position:chr8:26404389-26404542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 22

               
               
               Conread position:238-397
               
               
               Cow position:chr8:25388298-25388138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:240-397
               
               
               Cow position:chr8:15391001-15391157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 10

               
               
               Conread position:244-387
               
               
               Cow position:chr8:47969125-47969272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-388
               
               
               Cow position:chr8:43104139-43104284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):59, 109

               
               
               Conread position:244-395
               
               
               Cow position:chr8:21611538-21611377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr8:6616636-6616793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr8:20157605-20157762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr8:24237229-24237073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr8:24328707-24328855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:244-397
               
               
               Cow position:chr8:53965322-53965479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-398
               
               
               Cow position:chr8:12795979-12795821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:244-398
               
               
               Cow position:chr8:42112671-42112828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):61, 45

               
               
               Conread position:244-398
               
               
               Cow position:chr8:47664751-47664907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):62, 131

               
               
               Conread position:245-383
               
               
               Cow position:chr8:35555172-35555312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):57, 36

               
               
               Conread position:245-388
               
               
               Cow position:chr8:3762302-3762155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:245-391
               
               
               Cow position:chr8:38811456-38811307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:245-396
               
               
               Cow position:chr8:1114659-1114810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 106

               
               
               Conread position:245-397
               
               
               Cow position:chr8:21069819-21069976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):29, 135

               
               
               Conread position:245-397
               
               
               Cow position:chr8:21600600-21600444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:245-397
               
               
               Cow position:chr8:37347301-37347457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:246-383
               
               
               Cow position:chr8:6535957-6536095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 35

               
               
               Conread position:247-397
               
               
               Cow position:chr8:5884539-5884693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:247-397
               
               
               Cow position:chr8:40579263-40579416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:247-397
               
               
               Cow position:chr8:53251552-53251705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):68, 31

               
               
               Conread position:248-387
               
               
               Cow position:chr8:11003653-11003795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:248-397
               
               
               Cow position:chr8:21911787-21911634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:248-397
               
               
               Cow position:chr8:38852239-38852087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 30

               
               
               Conread position:248-397
               
               
               Cow position:chr8:47283923-47284072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):125, 84

               
               
               Conread position:249-399
               
               
               Cow position:chr8:61738486-61738331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 47

               
               
               Conread position:250-381
               
               
               Cow position:chr8:20926482-20926615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 125

               
               
               Conread position:251-397
               
               
               Cow position:chr8:49659275-49659127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):52, 43

               
               
               Conread position:252-382
               
               
               Cow position:chr8:55725622-55725755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):63, 89

               
               
               Conread position:252-392
               
               
               Cow position:chr8:4992694-4992556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:252-395
               
               
               Cow position:chr8:11277959-11278105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 32

               
               
               Conread position:252-396
               
               
               Cow position:chr8:8323723-8323871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-396
               
               
               Cow position:chr8:26626015-26625867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr8:537764-537915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr8:16144277-16144128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr8:19204299-19204448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr8:20327708-20327852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):120, 63

               
               
               Conread position:252-397
               
               
               Cow position:chr8:41722047-41722189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 51

               
               
               Conread position:252-397
               
               
               Cow position:chr8:50310704-50310855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr8:11612697-11612546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):58, 125

               
               
               Conread position:252-398
               
               
               Cow position:chr8:17199286-17199435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):56, 45

               
               
               Conread position:252-398
               
               
               Cow position:chr8:19632484-19632334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr8:20409833-20409685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr8:28378620-28378770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr8:37291942-37292093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr8:39590381-39590231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr8:46964882-46964732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:254-397
               
               
               Cow position:chr8:8097122-8097269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:254-397
               
               
               Cow position:chr8:61845406-61845554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:254-398
               
               
               Cow position:chr8:1999774-1999626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:254-398
               
               
               Cow position:chr8:15394716-15394863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):10, 43

               
               
               Conread position:255-367
               
               
               Cow position:chr8:36034827-36034939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:255-383
               
               
               Cow position:chr8:15238266-15238398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:255-392
               
               
               Cow position:chr8:39487494-39487634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:255-398
               
               
               Cow position:chr8:5894083-5893942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr8:1188055-1187919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):113, 55

               
               
               Conread position:260-397
               
               
               Cow position:chr8:20783125-20783264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 118

               
               
               Conread position:260-397
               
               
               Cow position:chr8:30324463-30324321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):12, 36

               
               
               Conread position:260-397
               
               
               Cow position:chr8:35497544-35497682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):46, 93

               
               
               Conread position:260-397
               
               
               Cow position:chr8:53552814-53552673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-398
               
               
               Cow position:chr8:33805662-33805522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 133

               
               
               Conread position:261-395
               
               
               Cow position:chr8:37443667-37443532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):45, 70

               
               
               Conread position:261-397
               
               
               Cow position:chr8:4525219-4525079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:262-396
               
               
               Cow position:chr8:43163567-43163704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:263-385
               
               
               Cow position:chr8:5546274-5546148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:263-391
               
               
               Cow position:chr8:17179899-17180030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:263-398
               
               
               Cow position:chr8:1620590-1620729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:266-383
               
               
               Cow position:chr8:28884970-28884851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 108

               
               
               Conread position:266-397
               
               
               Cow position:chr8:45879167-45879035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:266-397
               
               
               Cow position:chr8:45925749-45925617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:266-405
               
               
               Cow position:chr8:38711725-38711582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 12

               
               
               Conread position:271-402
               
               
               Cow position:chr8:45664875-45664740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:272-396
               
               
               Cow position:chr8:53429904-53429774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:272-397
               
               
               Cow position:chr8:32192817-32192688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:274-397
               
               
               Cow position:chr8:37571579-37571706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:275-392
               
               
               Cow position:chr8:53633100-53633220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:275-397
               
               
               Cow position:chr8:40143728-40143854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:275-397
               
               
               Cow position:chr8:45244905-45245033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:275-398
               
               
               Cow position:chr8:10846363-10846236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:278-397
               
               
               Cow position:chr8:3922595-3922718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:278-397
               
               
               Cow position:chr8:48512892-48513015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:279-395
               
               
               Cow position:chr8:4552628-4552748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:283-397
               
               
               Cow position:chr8:2163788-2163904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):25, 92

               
               
               Conread position:106-397
               
               
               Cow position:chr9:46664592-46664869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):263, 39

               
               
               Conread position:118-377
               
               
               Cow position:chr9:50540935-50540682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):172, 101

               
               
               Conread position:122-234
               
               
               Cow position:chr9:50202366-50202478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:124-249
               
               
               Cow position:chr9:49225189-49225314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:131-371
               
               
               Cow position:chr9:23403612-23403833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:133-397
               
               
               Cow position:chr9:5073038-5072796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):240, 26

               
               
               Conread position:135-367
               
               
               Cow position:chr9:44130019-44130261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):88, 13

               
               
               Conread position:136-242
               
               
               Cow position:chr9:34014440-34014338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:136-268
               
               
               Cow position:chr9:36849455-36849584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:136-268
               
               
               Cow position:chr9:53212105-53211969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:136-271
               
               
               Cow position:chr9:7951857-7951720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:136-332
               
               
               Cow position:chr9:9517812-9518009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):170, 123

               
               
               Conread position:136-371
               
               
               Cow position:chr9:45454866-45455090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:136-390
               
               
               Cow position:chr9:34065767-34065513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 101

               
               
               Conread position:136-390
               
               
               Cow position:chr9:52000822-52001052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):237, 71

               
               
               Conread position:136-396
               
               
               Cow position:chr9:36445395-36445661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):150, 86

               
               
               Conread position:136-397
               
               
               Cow position:chr9:17310804-17310523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):99, 236

               
               
               Conread position:136-397
               
               
               Cow position:chr9:24997727-24997477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):131, 84

               
               
               Conread position:136-397
               
               
               Cow position:chr9:59386985-59386727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 36

               
               
               Conread position:136-399
               
               
               Cow position:chr9:53413453-53413194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):159, 77

               
               
               Conread position:137-238
               
               
               Cow position:chr9:52513639-52513537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:137-395
               
               
               Cow position:chr9:11313728-11313470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):141, 14

               
               
               Conread position:137-398
               
               
               Cow position:chr9:28686182-28686430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):175, 14

               
               
               Conread position:137-398
               
               
               Cow position:chr9:39681128-39681382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):135, 96

               
               
               Conread position:138-391
               
               
               Cow position:chr9:52740098-52739871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):165, 77

               
               
               Conread position:138-395
               
               
               Cow position:chr9:55084506-55084264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):167, 81

               
               
               Conread position:138-398
               
               
               Cow position:chr9:28378741-28379009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 249

               
               
               Conread position:141-395
               
               
               Cow position:chr9:35106002-35105750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):107, 9

               
               
               Conread position:141-398
               
               
               Cow position:chr9:7634053-7634314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):121, 37

               
               
               Conread position:143-397
               
               
               Cow position:chr9:62668050-62668290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):159, 11

               
               
               Conread position:144-261
               
               
               Cow position:chr9:41701278-41701397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:144-346
               
               
               Cow position:chr9:63960348-63960151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):160, 101

               
               
               Conread position:144-368
               
               
               Cow position:chr9:58404647-58404415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:144-377
               
               
               Cow position:chr9:1972727-1972966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):42, 83

               
               
               Conread position:144-384
               
               
               Cow position:chr9:64154883-64154644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):162, 131

               
               
               Conread position:144-397
               
               
               Cow position:chr9:24243927-24243679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):161, 70

               
               
               Conread position:144-398
               
               
               Cow position:chr9:3738430-3738181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):86, 106

               
               
               Conread position:144-398
               
               
               Cow position:chr9:5763824-5763590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):224, 24

               
               
               Conread position:144-398
               
               
               Cow position:chr9:22696008-22696265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 188

               
               
               Conread position:144-401
               
               
               Cow position:chr9:1733130-1733390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):109, 89

               
               
               Conread position:145-364
               
               
               Cow position:chr9:41716229-41716449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 98

               
               
               Conread position:146-397
               
               
               Cow position:chr9:16137542-16137299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):227, 88

               
               
               Conread position:148-386
               
               
               Cow position:chr9:44467532-44467310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):158, 79

               
               
               Conread position:148-397
               
               
               Cow position:chr9:64050762-64050519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):157, 111

               
               
               Conread position:156-395
               
               
               Cow position:chr9:3773957-3774201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):53, 188

               
               
               Conread position:169-397
               
               
               Cow position:chr9:54051586-54051816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):7, 25

               
               
               Conread position:172-368
               
               
               Cow position:chr9:31270314-31270504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:174-398
               
               
               Cow position:chr9:5509560-5509767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):199, 33

               
               
               Conread position:175-397
               
               
               Cow position:chr9:8534882-8534648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):44, 95

               
               
               Conread position:177-397
               
               
               Cow position:chr9:34888468-34888256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):128, 47

               
               
               Conread position:185-393
               
               
               Cow position:chr9:25627911-25628123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:200-397
               
               
               Cow position:chr9:55532649-55532856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:212-395
               
               
               Cow position:chr9:39315704-39315890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 11

               
               
               Conread position:214-392
               
               
               Cow position:chr9:8288473-8288652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:217-397
               
               
               Cow position:chr9:11304217-11304037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):65, 25

               
               
               Conread position:221-395
               
               
               Cow position:chr9:42446121-42445943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 23

               
               
               Conread position:221-397
               
               
               Cow position:chr9:32955820-32955643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 12

               
               
               Conread position:221-397
               
               
               Cow position:chr9:35167040-35167218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):89, 25

               
               
               Conread position:222-371
               
               
               Cow position:chr9:36634899-36634748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 107

               
               
               Conread position:224-348
               
               
               Cow position:chr9:29578146-29578273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:224-395
               
               
               Cow position:chr9:17411328-17411153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:225-396
               
               
               Cow position:chr9:31814520-31814344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:226-397
               
               
               Cow position:chr9:32676551-32676719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:227-381
               
               
               Cow position:chr9:61981387-61981543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 125

               
               
               Conread position:229-367
               
               
               Cow position:chr9:46190012-46190153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:229-384
               
               
               Cow position:chr9:34135585-34135745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):25, 67

               
               
               Conread position:229-397
               
               
               Cow position:chr9:34014375-34014207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):77, 44

               
               
               Conread position:229-397
               
               
               Cow position:chr9:50081170-50080998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:230-395
               
               
               Cow position:chr9:1520868-1520697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 64

               
               
               Conread position:230-397
               
               
               Cow position:chr9:50543558-50543384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 61

               
               
               Conread position:237-397
               
               
               Cow position:chr9:43342209-43342371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):69, 153

               
               
               Conread position:241-366
               
               
               Cow position:chr9:15389339-15389212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):59, 19

               
               
               Conread position:241-397
               
               
               Cow position:chr9:22318235-22318392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):69, 12

               
               
               Conread position:242-377
               
               
               Cow position:chr9:1878806-1878947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:242-391
               
               
               Cow position:chr9:52807520-52807369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):64, 39

               
               
               Conread position:244-366
               
               
               Cow position:chr9:5531051-5531174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):62, 45

               
               
               Conread position:244-367
               
               
               Cow position:chr9:1884245-1884119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:244-381
               
               
               Cow position:chr9:3847287-3847428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:244-386
               
               
               Cow position:chr9:23632767-23632620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 47

               
               
               Conread position:244-387
               
               
               Cow position:chr9:5407635-5407486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:244-388
               
               
               Cow position:chr9:7101330-7101475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:244-396
               
               
               Cow position:chr9:47906396-47906240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:244-396
               
               
               Cow position:chr9:52407056-52407205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):129, 51

               
               
               Conread position:244-397
               
               
               Cow position:chr9:9753507-9753349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):18, 54

               
               
               Conread position:244-397
               
               
               Cow position:chr9:32858748-32858590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 104

               
               
               Conread position:244-397
               
               
               Cow position:chr9:52513564-52513406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:244-398
               
               
               Cow position:chr9:8562707-8562863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 109

               
               
               Conread position:245-385
               
               
               Cow position:chr9:50118086-50117944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:245-392
               
               
               Cow position:chr9:8467945-8468090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 122

               
               
               Conread position:245-397
               
               
               Cow position:chr9:17518601-17518447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:245-398
               
               
               Cow position:chr9:28392140-28391982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:245-398
               
               
               Cow position:chr9:32348929-32348771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:246-387
               
               
               Cow position:chr9:57117084-57116939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:246-397
               
               
               Cow position:chr9:9443715-9443562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 130

               
               
               Conread position:246-397
               
               
               Cow position:chr9:12226089-12225936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):60, 22

               
               
               Conread position:246-397
               
               
               Cow position:chr9:16300681-16300527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):62, 32

               
               
               Conread position:246-398
               
               
               Cow position:chr9:14975033-14974876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:247-393
               
               
               Cow position:chr9:33114234-33114383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 116

               
               
               Conread position:247-397
               
               
               Cow position:chr9:21888057-21888210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):5, 139

               
               
               Conread position:247-399
               
               
               Cow position:chr9:1751225-1751382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:248-395
               
               
               Cow position:chr9:33597877-33598026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):55, 30

               
               
               Conread position:248-395
               
               
               Cow position:chr9:34484486-34484635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):58, 12

               
               
               Conread position:248-397
               
               
               Cow position:chr9:7859742-7859595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):125, 102

               
               
               Conread position:248-397
               
               
               Cow position:chr9:52839990-52839839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):58, 41

               
               
               Conread position:248-398
               
               
               Cow position:chr9:27345693-27345541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 11

               
               
               Conread position:249-397
               
               
               Cow position:chr9:20637264-20637415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 76

               
               
               Conread position:250-397
               
               
               Cow position:chr9:24652295-24652446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:250-397
               
               
               Cow position:chr9:47214653-47214503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:251-398
               
               
               Cow position:chr9:13744037-13743887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:252-370
               
               
               Cow position:chr9:37955278-37955157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-371
               
               
               Cow position:chr9:8645159-8645282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:252-396
               
               
               Cow position:chr9:8901333-8901186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 37

               
               
               Conread position:252-396
               
               
               Cow position:chr9:9815306-9815452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):42, 129

               
               
               Conread position:252-397
               
               
               Cow position:chr9:1729781-1729632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr9:5110752-5110900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:252-397
               
               
               Cow position:chr9:10010708-10010852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):121, 63

               
               
               Conread position:252-397
               
               
               Cow position:chr9:12786580-12786431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr9:25375841-25375694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 83

               
               
               Conread position:252-397
               
               
               Cow position:chr9:29185244-29185095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr9:30402533-30402383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr9:51566602-51566453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-397
               
               
               Cow position:chr9:56032421-56032273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 29

               
               
               Conread position:252-398
               
               
               Cow position:chr9:32670054-32669904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr9:33541948-33542099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-398
               
               
               Cow position:chr9:42061991-42062144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:252-407
               
               
               Cow position:chr9:15806030-15805872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 149

               
               
               Conread position:253-391
               
               
               Cow position:chr9:34423515-34423657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:253-398
               
               
               Cow position:chr9:18828160-18828011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:254-372
               
               
               Cow position:chr9:9091210-9091090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):52, 117

               
               
               Conread position:254-397
               
               
               Cow position:chr9:21292511-21292365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):52, 12

               
               
               Conread position:254-397
               
               
               Cow position:chr9:34283849-34283995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):52, 35

               
               
               Conread position:254-397
               
               
               Cow position:chr9:35832721-35832577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:254-398
               
               
               Cow position:chr9:8937044-8937195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:255-397
               
               
               Cow position:chr9:64064467-64064321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:256-397
               
               
               Cow position:chr9:41964837-41964693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):50, 73

               
               
               Conread position:258-392
               
               
               Cow position:chr9:22434031-22433892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:260-392
               
               
               Cow position:chr9:5665969-5666103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:260-392
               
               
               Cow position:chr9:41781555-41781691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-395
               
               
               Cow position:chr9:5327159-5327298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-395
               
               
               Cow position:chr9:6839893-6840033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:260-396
               
               
               Cow position:chr9:1878101-1877965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):46, 114

               
               
               Conread position:260-396
               
               
               Cow position:chr9:34410495-34410355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr9:4630005-4630145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):46, 92

               
               
               Conread position:260-397
               
               
               Cow position:chr9:7806058-7805919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:260-397
               
               
               Cow position:chr9:28354418-28354560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr9:39148980-39149121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:260-397
               
               
               Cow position:chr9:41282916-41283057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:260-398
               
               
               Cow position:chr9:8998250-8998392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:260-398
               
               
               Cow position:chr9:52763858-52763717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:260-398
               
               
               Cow position:chr9:60110151-60110292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:262-397
               
               
               Cow position:chr9:52598818-52598679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:266-398
               
               
               Cow position:chr9:5245760-5245898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:266-401
               
               
               Cow position:chr9:51720991-51720854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 110

               
               
               Conread position:267-397
               
               
               Cow position:chr9:60355306-60355170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:272-395
               
               
               Cow position:chr9:8992267-8992139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:272-396
               
               
               Cow position:chr9:29684058-29684183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):34, 16

               
               
               Conread position:272-397
               
               
               Cow position:chr9:42478569-42478440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:272-398
               
               
               Cow position:chr9:14796857-14796727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:272-399
               
               
               Cow position:chr9:43870888-43871019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:273-392
               
               
               Cow position:chr9:58369082-58368960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 86

               
               
               Conread position:274-396
               
               
               Cow position:chr9:33347575-33347449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:275-395
               
               
               Cow position:chr9:25400282-25400161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):31, 69

               
               
               Conread position:279-395
               
               
               Cow position:chr9:15225376-15225256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:431-569
               
               
               Cow position:chr9:43268144-43268004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:126-397
               
               
               Cow position:chrX:18046680-18046415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):15, 141

               
               
               Conread position:128-248
               
               
               Cow position:chrX:16348313-16348434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:135-250
               
               
               Cow position:chrX:616006-616121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:135-269
               
               
               Cow position:chrX:12250048-12249916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):114, 66

               
               
               Conread position:136-232
               
               
               Cow position:chrX:23182735-23182831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:80
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-232
               
               
               Cow position:chrX:43014428-43014524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-257
               
               
               Cow position:chrX:47101058-47101179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-269
               
               
               Cow position:chrX:40580374-40580507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-270
               
               
               Cow position:chrX:23575028-23574894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):70, 89

               
               
               Conread position:136-331
               
               
               Cow position:chrX:42482557-42482754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):170, 72

               
               
               Conread position:136-370
               
               
               Cow position:chrX:33151693-33151941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):51, 191

               
               
               Conread position:136-395
               
               
               Cow position:chrX:11717492-11717767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:136-397
               
               
               Cow position:chrX:23562898-23562646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):166, 70

               
               
               Conread position:137-231
               
               
               Cow position:chrX:33865066-33865160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:79
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-258
               
               
               Cow position:chrX:23265200-23265321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-268
               
               
               Cow position:chrX:38226534-38226665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-363
               
               
               Cow position:chrX:25282783-25282989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):169, 69

               
               
               Conread position:137-389
               
               
               Cow position:chrX:27296265-27296506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 72

               
               
               Conread position:138-397
               
               
               Cow position:chrX:29194506-29194246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):164, 80

               
               
               Conread position:141-346
               
               
               Cow position:chrX:29328042-29327828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:141-383
               
               
               Cow position:chrX:23574915-23574683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):165, 65

               
               
               Conread position:143-366
               
               
               Cow position:chrX:23187323-23187547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 126

               
               
               Conread position:144-249
               
               
               Cow position:chrX:15545427-15545532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-251
               
               
               Cow position:chrX:35848971-35848863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:144-336
               
               
               Cow position:chrX:10078903-10079100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):89, 73

               
               
               Conread position:144-340
               
               
               Cow position:chrX:44569650-44569443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):60, 155

               
               
               Conread position:144-364
               
               
               Cow position:chrX:2742079-2742293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):168, 27

               
               
               Conread position:144-382
               
               
               Cow position:chrX:11180930-11181167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):48, 71

               
               
               Conread position:144-390
               
               
               Cow position:chrX:6222867-6223107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):162, 33

               
               
               Conread position:144-392
               
               
               Cow position:chrX:43729948-43730204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):130, 23

               
               
               Conread position:144-397
               
               
               Cow position:chrX:20743875-20743618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):67, 23

               
               
               Conread position:144-398
               
               
               Cow position:chrX:17726239-17725988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):213, 122

               
               
               Conread position:144-398
               
               
               Cow position:chrX:27516795-27516543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):95, 223

               
               
               Conread position:151-268
               
               
               Cow position:chrX:11582516-11582399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:176-384
               
               
               Cow position:chrX:11582464-11582248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:195-397
               
               
               Cow position:chrX:22914824-22915026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):13, 42

               
               
               Conread position:199-381
               
               
               Cow position:chrX:46986886-46987078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:200-407
               
               
               Cow position:chrX:41270778-41270982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):108, 28

               
               
               Conread position:205-397
               
               
               Cow position:chrX:42171085-42171280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 85

               
               
               Conread position:206-397
               
               
               Cow position:chrX:42235316-42235510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):100, 72

               
               
               Conread position:206-398
               
               
               Cow position:chrX:43116931-43116738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:207-381
               
               
               Cow position:chrX:23860787-23860964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):67, 38

               
               
               Conread position:207-397
               
               
               Cow position:chrX:45099336-45099142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:218-363
               
               
               Cow position:chrX:48153658-48153806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:220-398
               
               
               Cow position:chrX:22822240-22822059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 24

               
               
               Conread position:224-396
               
               
               Cow position:chrX:37129460-37129284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:226-389
               
               
               Cow position:chrX:9365487-9365654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:226-397
               
               
               Cow position:chrX:25037175-25037001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):80, 15

               
               
               Conread position:231-348
               
               
               Cow position:chrX:16481386-16481506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:231-397
               
               
               Cow position:chrX:18694749-18694913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 127

               
               
               Conread position:236-395
               
               
               Cow position:chrX:23498503-23498661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:238-398
               
               
               Cow position:chrX:23266591-23266428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:241-398
               
               
               Cow position:chrX:31250561-31250401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):65, 11

               
               
               Conread position:242-395
               
               
               Cow position:chrX:33640148-33639991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:243-395
               
               
               Cow position:chrX:38964281-38964124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:243-397
               
               
               Cow position:chrX:29478894-29478738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 11

               
               
               Conread position:243-398
               
               
               Cow position:chrX:16575284-16575125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:244-361
               
               
               Cow position:chrX:7107672-7107553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:244-366
               
               
               Cow position:chrX:43014502-43014627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:244-367
               
               
               Cow position:chrX:41990963-41991089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-370
               
               
               Cow position:chrX:31373707-31373578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:244-387
               
               
               Cow position:chrX:37062413-37062561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:244-392
               
               
               Cow position:chrX:29680091-29680242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):62, 34

               
               
               Conread position:244-395
               
               
               Cow position:chrX:5872488-5872333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:244-396
               
               
               Cow position:chrX:25459557-25459720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 112

               
               
               Conread position:244-397
               
               
               Cow position:chrX:4043696-4043849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 109

               
               
               Conread position:244-397
               
               
               Cow position:chrX:25412076-25411921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):62, 51

               
               
               Conread position:244-397
               
               
               Cow position:chrX:27393855-27394012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:244-397
               
               
               Cow position:chrX:34503090-34502934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):8, 32

               
               
               Conread position:244-398
               
               
               Cow position:chrX:16409773-16409615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:244-398
               
               
               Cow position:chrX:40531872-40532030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:244-399
               
               
               Cow position:chrX:38226941-38227095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):62, 31

               
               
               Conread position:245-357
               
               
               Cow position:chrX:36039567-36039454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):61, 9

               
               
               Conread position:245-395
               
               
               Cow position:chrX:6690092-6690244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):61, 33

               
               
               Conread position:245-397
               
               
               Cow position:chrX:21328083-21327925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:245-397
               
               
               Cow position:chrX:35285343-35285187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:246-395
               
               
               Cow position:chrX:46532328-46532479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):62, 18

               
               
               Conread position:246-397
               
               
               Cow position:chrX:28878006-28878160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):62, 14

               
               
               Conread position:246-397
               
               
               Cow position:chrX:29733426-29733578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):60, 20

               
               
               Conread position:246-397
               
               
               Cow position:chrX:39220248-39220093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:246-398
               
               
               Cow position:chrX:37489887-37489732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:247-371
               
               
               Cow position:chrX:27667594-27667466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:247-382
               
               
               Cow position:chrX:40649063-40648923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:247-397
               
               
               Cow position:chrX:31829293-31829447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:247-397
               
               
               Cow position:chrX:42855626-42855472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:247-412
               
               
               Cow position:chrX:19018663-19018831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):59, 160

               
               
               Conread position:248-395
               
               
               Cow position:chrX:169379-169529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 133

               
               
               Conread position:250-397
               
               
               Cow position:chrX:25815737-25815887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:250-397
               
               
               Cow position:chrX:31294407-31294558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:251-392
               
               
               Cow position:chrX:35269025-35268884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):57, 108

               
               
               Conread position:252-382
               
               
               Cow position:chrX:2314456-2314590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-382
               
               
               Cow position:chrX:34270724-34270592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 122

               
               
               Conread position:252-388
               
               
               Cow position:chrX:35681729-35681589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:252-391
               
               
               Cow position:chrX:27705749-27705606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:252-392
               
               
               Cow position:chrX:20345613-20345472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):58, 123

               
               
               Conread position:252-392
               
               
               Cow position:chrX:30133158-30133299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:252-392
               
               
               Cow position:chrX:32877214-32877356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):54, 12

               
               
               Conread position:252-395
               
               
               Cow position:chrX:36866335-36866189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:252-395
               
               
               Cow position:chrX:38549610-38549461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-397
               
               
               Cow position:chrX:1122384-1122529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 107

               
               
               Conread position:252-397
               
               
               Cow position:chrX:4559896-4559753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 101

               
               
               Conread position:252-397
               
               
               Cow position:chrX:6259987-6260133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:252-397
               
               
               Cow position:chrX:12309223-12309372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:252-397
               
               
               Cow position:chrX:20168720-20168572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 37

               
               
               Conread position:252-397
               
               
               Cow position:chrX:20339731-20339877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):68, 139

               
               
               Conread position:252-397
               
               
               Cow position:chrX:35276148-35276000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 134

               
               
               Conread position:252-397
               
               
               Cow position:chrX:40680777-40680628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chrX:41027322-41027173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chrX:42247019-42247168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:252-397
               
               
               Cow position:chrX:42492361-42492509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):54, 45

               
               
               Conread position:252-397
               
               
               Cow position:chrX:42836343-42836195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):58, 26

               
               
               Conread position:252-398
               
               
               Cow position:chrX:8731256-8731107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):53, 101

               
               
               Conread position:252-398
               
               
               Cow position:chrX:17231899-17231748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:252-398
               
               
               Cow position:chrX:24331939-24331789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:252-398
               
               
               Cow position:chrX:36976114-36975965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):43, 133

               
               
               Conread position:252-398
               
               
               Cow position:chrX:43008772-43008622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:252-401
               
               
               Cow position:chrX:37956010-37955857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:253-395
               
               
               Cow position:chrX:40108356-40108503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:253-398
               
               
               Cow position:chrX:19965234-19965383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:254-395
               
               
               Cow position:chrX:10516414-10516269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:254-395
               
               
               Cow position:chrX:12095611-12095758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:254-395
               
               
               Cow position:chrX:46587983-46587838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:254-397
               
               
               Cow position:chrX:3806840-3806696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):52, 21

               
               
               Conread position:254-397
               
               
               Cow position:chrX:4645752-4645899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:254-397
               
               
               Cow position:chrX:27261353-27261205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:254-398
               
               
               Cow position:chrX:24365662-24365808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:254-398
               
               
               Cow position:chrX:31489681-31489533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:255-392
               
               
               Cow position:chrX:29601666-29601809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:255-398
               
               
               Cow position:chrX:26843111-26843256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):60, 11

               
               
               Conread position:256-367
               
               
               Cow position:chrX:42875371-42875257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:256-386
               
               
               Cow position:chrX:27270535-27270402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):52, 120

               
               
               Conread position:257-397
               
               
               Cow position:chrX:42449856-42450000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:257-398
               
               
               Cow position:chrX:34543942-34543797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 32

               
               
               Conread position:260-383
               
               
               Cow position:chrX:46909970-46909843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:260-391
               
               
               Cow position:chrX:28068005-28067870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 29

               
               
               Conread position:260-392
               
               
               Cow position:chrX:41810013-41810149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-396
               
               
               Cow position:chrX:11653925-11653779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-397
               
               
               Cow position:chrX:20887485-20887625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):34, 116

               
               
               Conread position:260-397
               
               
               Cow position:chrX:39180079-39180219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):46, 59

               
               
               Conread position:260-397
               
               
               Cow position:chrX:41068880-41068739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:260-398
               
               
               Cow position:chrX:12290874-12290732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:260-398
               
               
               Cow position:chrX:29544722-29544864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-398
               
               
               Cow position:chrX:31729597-31729455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-398
               
               
               Cow position:chrX:35885572-35885714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:260-398
               
               
               Cow position:chrX:44054959-44054815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:261-397
               
               
               Cow position:chrX:27511582-27511442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:261-397
               
               
               Cow position:chrX:42873539-42873401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):45, 95

               
               
               Conread position:261-397
               
               
               Cow position:chrX:42894079-42893938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:263-395
               
               
               Cow position:chrX:38728886-38728750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:263-397
               
               
               Cow position:chrX:17524232-17524370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:267-396
               
               
               Cow position:chrX:11762854-11762986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:271-395
               
               
               Cow position:chrX:31442685-31442813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:272-392
               
               
               Cow position:chrX:10076114-10075992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):34, 103

               
               
               Conread position:272-397
               
               
               Cow position:chrX:38218859-38218728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:273-397
               
               
               Cow position:chrX:29289720-29289592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:273-398
               
               
               Cow position:chrX:41941765-41941636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:273-398
               
               
               Cow position:chrX:46433633-46433504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:275-398
               
               
               Cow position:chrX:26205308-26205435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 0
Conread position:	119-397
Cow position:	chr10:67260296-67260563 (view UCSC Genome Browser custom track)
Alignm length:	281
Alignm identity:	195
Alignm E-value:	5e-32
Alignm gaps (pig, cow):	186, 13
Conread position:	122-348
Cow position:	chr10:31265819-31266041 (view UCSC Genome Browser custom track)
Alignm length:	230
Alignm identity:	168
Alignm E-value:	6e-34
Alignm gaps (pig, cow):	184, 84
Conread position:	124-380
Cow position:	chr10:9578735-9578977 (view UCSC Genome Browser custom track)
Alignm length:	261
Alignm identity:	184
Alignm E-value:	9e-28
Alignm gaps (pig, cow):	18, 85
Conread position:	131-385
Cow position:	chr10:890213-889938 (view UCSC Genome Browser custom track)
Alignm length:	277
Alignm identity:	207
Alignm E-value:	9.99995e-41
Alignm gaps (pig, cow):	95, 16
Conread position:	132-387
Cow position:	chr10:24732525-24732281 (view UCSC Genome Browser custom track)
Alignm length:	260
Alignm identity:	189
Alignm E-value:	5e-33
Alignm gaps (pig, cow):	174, 13
Conread position:	135-396
Cow position:	chr10:29919619-29919874 (view UCSC Genome Browser custom track)
Alignm length:	266
Alignm identity:	183
Alignm E-value:	1e-28
Alignm gaps (pig, cow):	167, 101
Conread position:	136-229
Cow position:	chr10:50042797-50042703 (view UCSC Genome Browser custom track)
Alignm length:	95
Alignm identity:	81
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	86, 0
Conread position:	136-252
Cow position:	chr10:14384703-14384820 (view UCSC Genome Browser custom track)
Alignm length:	119
Alignm identity:	94
Alignm E-value:	4e-21
Alignm gaps (pig, cow):	94, 35
Conread position:	136-263
Cow position:	chr10:39109515-39109642 (view UCSC Genome Browser custom track)
Alignm length:	128
Alignm identity:	101
Alignm E-value:	8e-26
Alignm gaps (pig, cow):	0, 0
Conread position:	136-348
Cow position:	chr10:22566932-22567144 (view UCSC Genome Browser custom track)
Alignm length:	217
Alignm identity:	167
Alignm E-value:	1e-39
Alignm gaps (pig, cow):	33, 37
Conread position:	136-365
Cow position:	chr10:2190896-2191115 (view UCSC Genome Browser custom track)
Alignm length:	233
Alignm identity:	172
Alignm E-value:	2e-33
Alignm gaps (pig, cow):	172, 67
Conread position:	136-384
Cow position:	chr10:48366516-48366762 (view UCSC Genome Browser custom track)
Alignm length:	255
Alignm identity:	173
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	44, 61
Conread position:	136-395
Cow position:	chr10:31373870-31374122 (view UCSC Genome Browser custom track)
Alignm length:	263
Alignm identity:	193
Alignm E-value:	3e-39
Alignm gaps (pig, cow):	197, 83
Conread position:	136-399
Cow position:	chr10:28776574-28776311 (view UCSC Genome Browser custom track)
Alignm length:	269
Alignm identity:	187
Alignm E-value:	2e-32
Alignm gaps (pig, cow):	170, 86
Conread position:	136-401
Cow position:	chr10:52167405-52167138 (view UCSC Genome Browser custom track)
Alignm length:	272
Alignm identity:	198
Alignm E-value:	9.99967e-42
Alignm gaps (pig, cow):	93, 143
Conread position:	137-277
Cow position:	chr10:36106945-36107079 (view UCSC Genome Browser custom track)
Alignm length:	141
Alignm identity:	107
Alignm E-value:	4e-21
Alignm gaps (pig, cow):	61, 0
Conread position:	137-375
Cow position:	chr10:57457849-57457616 (view UCSC Genome Browser custom track)
Alignm length:	242
Alignm identity:	177
Alignm E-value:	8e-37
Alignm gaps (pig, cow):	169, 13
Conread position:	144-271
Cow position:	chr10:58259283-58259410 (view UCSC Genome Browser custom track)
Alignm length:	128
Alignm identity:	98
Alignm E-value:	5e-23
Alignm gaps (pig, cow):	0, 0
Conread position:	144-352
Cow position:	chr10:18229240-18229457 (view UCSC Genome Browser custom track)
Alignm length:	218
Alignm identity:	156
Alignm E-value:	3e-28
Alignm gaps (pig, cow):	67, 0
Conread position:	144-397
Cow position:	chr10:59663766-59664010 (view UCSC Genome Browser custom track)
Alignm length:	260
Alignm identity:	182
Alignm E-value:	8e-26
Alignm gaps (pig, cow):	157, 75