Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8026F10.3 |
| Conread position: | 418-740 |
| Cow position: | chr1:2000198-1999879 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 160, 151 |
| Conread position: | 356-653 |
| Cow position: | chr13:24162567-24162861 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 68, 36 |
| Conread position: | 356-661 |
| Cow position: | chr13:39930644-39930946 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 67, 39 |
| Conread position: | 115-840 |
| Cow position: | chr14:3061389-3060676 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 433 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 53, 63 |
| Conread position: | 122-824 |
| Cow position: | chr14:3061632-3060944 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 415 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 97, 9 |
| Conread position: | 356-641 |
| Cow position: | chr14:434061-434343 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 69, 36 |
| Conread position: | 356-813 |
| Cow position: | chr14:3061742-3061291 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 228, 36 |
| Conread position: | 359-874 |
| Cow position: | chr14:680477-680985 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 437-881 |
| Cow position: | chr14:25895191-25895632 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 150, 135 |
| Conread position: | 509-850 |
| Cow position: | chr15:48468846-48469181 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 1-108 |
| Cow position: | chr16:34612115-34612008 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 104-199 |
| Cow position: | chr16:34611431-34611336 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 198-285 |
| Cow position: | chr16:34611015-34610928 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 287-442 |
| Cow position: | chr16:34610737-34610582 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 145 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 438-578 |
| Cow position: | chr16:34610194-34610054 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 135 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 573-743 |
| Cow position: | chr16:34609988-34609817 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 159 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 742-833 |
| Cow position: | chr16:34609555-34609464 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 831-1092 |
| Cow position: | chr16:34609377-34609116 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-623 |
| Cow position: | chr17:41440960-41440356 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 387 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 66, 41 |
| Conread position: | 110-841 |
| Cow position: | chr17:44467367-44468086 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 426 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 115-814 |
| Cow position: | chr17:41441023-41440336 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 410 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 295, 128 |
| Conread position: | 115-863 |
| Cow position: | chr17:41440939-41440203 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 437 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 124, 111 |
| Conread position: | 116-631 |
| Cow position: | chr17:44467709-44468215 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 316 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 53, 62 |
| Conread position: | 357-869 |
| Cow position: | chr17:44467355-44467861 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 321 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 11, 33 |
| Conread position: | 507-814 |
| Cow position: | chr17:44467923-44468227 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 87-652 |
| Cow position: | chr18:56391442-56390886 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 337 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 89, 81 |
| Conread position: | 109-741 |
| Cow position: | chr18:22844274-22843648 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 376 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 68, 60 |
| Conread position: | 267-862 |
| Cow position: | chr18:56391602-56391015 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 347 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 424-740 |
| Cow position: | chr18:42724267-42723958 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 160, 16 |
| Conread position: | 100-882 |
| Cow position: | chr21:12659000-12659770 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 457 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 76, 68 |
| Conread position: | 175-814 |
| Cow position: | chr21:12659327-12659954 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 384 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 247, 88 |
| Conread position: | 356-876 |
| Cow position: | chr21:12658998-12659509 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 363, 33 |
| Conread position: | 374-824 |
| Cow position: | chr21:12658932-12659376 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 274 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 1-791 |
| Cow position: | chr25:25652601-25653370 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 464 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 176, 73 |
| Conread position: | 109-740 |
| Cow position: | chr25:25652364-25652983 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 390 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 109-824 |
| Cow position: | chr25:25652532-25653235 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 425 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 611, 147 |
| Conread position: | 112-881 |
| Cow position: | chr25:25652283-25653040 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 468 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 65, 56 |
| Conread position: | 176-586 |
| Cow position: | chr25:3636403-3636002 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 148, 84 |
| Conread position: | 176-738 |
| Cow position: | chr25:3664006-3664556 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 340 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 87 |
| Conread position: | 356-729 |
| Cow position: | chr25:33530394-33530761 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 214, 39 |
| Conread position: | 358-874 |
| Cow position: | chr25:34473590-34474097 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 317 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 47, 31 |
| Conread position: | 359-880 |
| Cow position: | chr25:25652188-25652703 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 307 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 57, 30 |
| Conread position: | 373-813 |
| Cow position: | chr25:3663945-3664379 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 61, 16 |
| Conread position: | 374-776 |
| Cow position: | chr25:33506763-33507159 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 35, 15 |
| Conread position: | 474-741 |
| Cow position: | chr25:4657437-4657173 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 116, 109 |
| Conread position: | 498-740 |
| Cow position: | chr25:33529150-33529389 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 82, 71 |
| Conread position: | 359-785 |
| Cow position: | chr28:34695996-34696416 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 33 |
| Conread position: | 296-653 |
| Cow position: | chr3:20194746-20195097 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 107, 54 |
| Conread position: | 287-862 |
| Cow position: | chr4:65350144-65350707 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 353 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 26 |
| Conread position: | 349-737 |
| Cow position: | chr4:65350035-65350417 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 44 |
| Conread position: | 349-785 |
| Cow position: | chr4:65703593-65703163 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 46 |
| Conread position: | 356-778 |
| Cow position: | chr4:65121698-65122114 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 433-850 |
| Cow position: | chr4:65494954-65494534 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 252 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 101, 254 |
| Conread position: | 446-863 |
| Cow position: | chr4:65350045-65350459 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 226, 232 |
| Conread position: | 470-779 |
| Cow position: | chr4:65350486-65350792 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 111, 115 |
| Conread position: | 482-862 |
| Cow position: | chr4:65494989-65494606 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 135, 208 |
| Conread position: | 100-835 |
| Cow position: | chr6:49428311-49429031 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 442 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 303, 152 |
| Conread position: | 109-740 |
| Cow position: | chr6:49428824-49429443 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 375 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 109-824 |
| Cow position: | chr6:49428572-49429275 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 429 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 262-641 |
| Cow position: | chr7:12293590-12293963 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 241, 80 |