Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8001K09.5 |
| Conread position: | 710-912 |
| Cow position: | chr1:78069382-78069172 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 43 |
| Conread position: | 712-872 |
| Cow position: | chr1:77452483-77452651 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 712-873 |
| Cow position: | chr1:88482735-88482898 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 98, 82 |
| Conread position: | 717-873 |
| Cow position: | chr1:21582894-21583055 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 719-873 |
| Cow position: | chr1:91059593-91059745 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 81, 14 |
| Conread position: | 729-870 |
| Cow position: | chr1:16249425-16249280 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 62-341 |
| Cow position: | chr10:38310874-38310573 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 224 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 45, 283 |
| Conread position: | 294-909 |
| Cow position: | chr10:38310582-38309981 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 712-870 |
| Cow position: | chr10:44864048-44863888 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 87, 129 |
| Conread position: | 712-900 |
| Cow position: | chr10:64163145-64163339 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 87, 164 |
| Conread position: | 720-871 |
| Cow position: | chr10:52640388-52640538 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 80, 35 |
| Conread position: | 702-875 |
| Cow position: | chr11:51020384-51020562 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 705-872 |
| Cow position: | chr11:24929839-24930012 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 87, 29 |
| Conread position: | 707-867 |
| Cow position: | chr11:61205269-61205431 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 98, 29 |
| Conread position: | 716-898 |
| Cow position: | chr12:28675622-28675805 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 84, 95 |
| Conread position: | 729-894 |
| Cow position: | chr12:8873301-8873464 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 79, 106 |
| Conread position: | 627-874 |
| Cow position: | chr13:10379695-10379443 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 28 |
| Conread position: | 712-884 |
| Cow position: | chr13:53871981-53872153 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 68, 9 |
| Conread position: | 719-874 |
| Cow position: | chr13:58856922-58857081 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 721-862 |
| Cow position: | chr13:3629495-3629643 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 713-851 |
| Cow position: | chr14:30132545-30132688 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 8 |
| Conread position: | 713-878 |
| Cow position: | chr15:43007446-43007275 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 713-899 |
| Cow position: | chr15:5443415-5443596 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 48 |
| Conread position: | 732-897 |
| Cow position: | chr15:19396498-19396665 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 68, 81 |
| Conread position: | 735-867 |
| Cow position: | chr15:27986668-27986803 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 751-879 |
| Cow position: | chr15:2797746-2797617 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 54, 79 |
| Conread position: | 720-904 |
| Cow position: | chr16:30691468-30691288 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 84, 123 |
| Conread position: | 731-898 |
| Cow position: | chr16:43843282-43843109 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 712-900 |
| Cow position: | chr17:19366481-19366673 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 148 |
| Conread position: | 707-868 |
| Cow position: | chr18:55107386-55107224 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 96, 130 |
| Conread position: | 722-874 |
| Cow position: | chr18:26550988-26551143 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 78, 132 |
| Conread position: | 737-873 |
| Cow position: | chr18:26846520-26846659 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 58, 42 |
| Conread position: | 707-882 |
| Cow position: | chr2:4693962-4694139 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 98, 20 |
| Conread position: | 716-881 |
| Cow position: | chr2:13853191-13853364 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 76, 154 |
| Conread position: | 717-883 |
| Cow position: | chr2:35203879-35204048 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 88, 12 |
| Conread position: | 720-875 |
| Cow position: | chr2:41726013-41726172 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 729-867 |
| Cow position: | chr2:80806278-80806139 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 76, 114 |
| Conread position: | 713-864 |
| Cow position: | chr20:12535967-12535810 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 9 |
| Conread position: | 707-883 |
| Cow position: | chr21:39884189-39884373 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 716-874 |
| Cow position: | chr22:22046053-22046210 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 84 |
| Conread position: | 735-881 |
| Cow position: | chr23:14642036-14641886 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 59, 111 |
| Conread position: | 712-873 |
| Cow position: | chr24:18793535-18793697 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 93, 45 |
| Conread position: | 716-883 |
| Cow position: | chr24:25503751-25503919 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 62, 112 |
| Conread position: | 721-863 |
| Cow position: | chr24:10800089-10800230 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 114, 92 |
| Conread position: | 706-895 |
| Cow position: | chr27:21239459-21239263 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 63 |
| Conread position: | 710-867 |
| Cow position: | chr27:26349091-26349252 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 91, 42 |
| Conread position: | 712-874 |
| Cow position: | chr29:21378-21205 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 726-870 |
| Cow position: | chr29:9852249-9852099 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 729-873 |
| Cow position: | chr29:40547882-40548030 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 660-892 |
| Cow position: | chr3:78171921-78171689 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 12, 37 |
| Conread position: | 713-864 |
| Cow position: | chr3:24787490-24787641 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 93, 79 |
| Conread position: | 729-860 |
| Cow position: | chr3:8852552-8852686 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 72, 31 |
| Conread position: | 675-899 |
| Cow position: | chr4:48118618-48118387 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 28, 14 |
| Conread position: | 713-873 |
| Cow position: | chr4:22891194-22891354 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 8, 29 |
| Conread position: | 686-901 |
| Cow position: | chr5:8202609-8202830 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 712-883 |
| Cow position: | chr5:41652050-41651878 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 25, 31 |
| Conread position: | 716-872 |
| Cow position: | chr5:70950282-70950118 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 721-874 |
| Cow position: | chr5:14342273-14342120 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 15, 97 |
| Conread position: | 737-894 |
| Cow position: | chr5:13940884-13940725 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 67, 100 |
| Conread position: | 706-879 |
| Cow position: | chr6:15665100-15664922 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 71 |
| Conread position: | 735-872 |
| Cow position: | chr6:43381253-43381393 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 729-912 |
| Cow position: | chr7:54368598-54368414 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 33 |
| Conread position: | 712-871 |
| Cow position: | chr8:46279981-46280142 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 86, 128 |
| Conread position: | 714-873 |
| Cow position: | chr8:54157111-54157268 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 87, 28 |
| Conread position: | 710-874 |
| Cow position: | chrX:15626437-15626272 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 82, 24 |
| Conread position: | 729-902 |
| Cow position: | chrX:9129737-9129915 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 63, 170 |
| Conread position: | 730-879 |
| Cow position: | chrX:28141680-28141525 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 12 |