Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8022C20.3 |
| Conread position: | 519-639 |
| Cow position: | chr1:55114191-55114072 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 519-662 |
| Cow position: | chr1:90041434-90041578 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 519-661 |
| Cow position: | chr10:22588374-22588231 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 519-661 |
| Cow position: | chr10:25501417-25501555 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 126, 77 |
| Conread position: | 519-662 |
| Cow position: | chr10:29743715-29743860 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 565-664 |
| Cow position: | chr11:21727100-21727200 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 86 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 3-313 |
| Cow position: | chr14:17413817-17413505 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 17 |
| Conread position: | 521-663 |
| Cow position: | chr14:26159735-26159593 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 126, 109 |
| Conread position: | 665-1476 |
| Cow position: | chr14:17413523-17412709 (view UCSC Genome Browser custom track) |
| Alignm length: | 816 |
| Alignm identity: | 777 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 355 |
| Conread position: | 519-638 |
| Cow position: | chr15:6173854-6173973 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 519-664 |
| Cow position: | chr15:526637-526782 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 122, 28 |
| Conread position: | 519-666 |
| Cow position: | chr15:47550944-47550796 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 520-686 |
| Cow position: | chr15:33700990-33700825 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 125, 146 |
| Conread position: | 519-640 |
| Cow position: | chr16:23891761-23891640 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 519-664 |
| Cow position: | chr16:32593004-32592861 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 536-664 |
| Cow position: | chr16:24439688-24439559 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 549-645 |
| Cow position: | chr16:21565032-21565128 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 85 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 519-664 |
| Cow position: | chr17:2806081-2805932 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 520-665 |
| Cow position: | chr17:29040328-29040472 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 124, 132 |
| Conread position: | 525-663 |
| Cow position: | chr17:31602558-31602420 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 120, 22 |
| Conread position: | 483-663 |
| Cow position: | chr18:51809202-51809380 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 98, 15 |
| Conread position: | 483-683 |
| Cow position: | chr18:51786136-51786335 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 155, 12 |
| Conread position: | 519-664 |
| Cow position: | chr18:16580462-16580316 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 519-640 |
| Cow position: | chr19:20605624-20605498 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 519-664 |
| Cow position: | chr19:4325165-4325019 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 519-664 |
| Cow position: | chr19:13878742-13878595 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 519-664 |
| Cow position: | chr19:28439376-28439522 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 519-664 |
| Cow position: | chr19:28442153-28442298 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 120, 78 |
| Conread position: | 519-664 |
| Cow position: | chr19:36475537-36475396 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 22, 17 |
| Conread position: | 520-664 |
| Cow position: | chr19:35608190-35608335 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 531-664 |
| Cow position: | chr21:15244981-15245116 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 519-664 |
| Cow position: | chr22:12964914-12964768 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 519-663 |
| Cow position: | chr23:6664237-6664092 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 519-664 |
| Cow position: | chr23:26323686-26323539 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 521-664 |
| Cow position: | chr23:11731045-11730898 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 519-640 |
| Cow position: | chr24:2129362-2129485 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 105, 97 |
| Conread position: | 519-656 |
| Cow position: | chr24:35052970-35053108 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 519-664 |
| Cow position: | chr24:16956378-16956524 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 519-664 |
| Cow position: | chr25:24491038-24491185 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 519-664 |
| Cow position: | chr26:13713369-13713515 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 520-664 |
| Cow position: | chr26:17662478-17662331 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 523-664 |
| Cow position: | chr27:25168040-25168181 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 118, 129 |
| Conread position: | 519-636 |
| Cow position: | chr29:39587681-39587797 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 521-664 |
| Cow position: | chr29:898906-898757 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 519-621 |
| Cow position: | chr3:5449074-5449177 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 519-664 |
| Cow position: | chr3:67825016-67824870 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 523-664 |
| Cow position: | chr4:45560286-45560144 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 519-661 |
| Cow position: | chr5:67954263-67954405 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 122, 138 |
| Conread position: | 519-621 |
| Cow position: | chr6:18790731-18790833 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 84 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 520-665 |
| Cow position: | chr6:26948406-26948258 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 569-664 |
| Cow position: | chr7:27799305-27799209 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 519-663 |
| Cow position: | chr9:20709590-20709445 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 519-654 |
| Cow position: | chrX:25950893-25950756 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 519-664 |
| Cow position: | chrX:36190569-36190423 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 521-662 |
| Cow position: | chrX:30094042-30094185 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 537-663 |
| Cow position: | chrX:41748207-41748332 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 104, 85 |