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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8023H12.5
        

               
Conread position:
               
73-302
               

               
Cow position:
               
chr10:61878179-61878409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
41, 29
               

               
Conread position:
               
85-429
               

               
Cow position:
               
chr10:62602418-62602071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 21
               

               
Conread position:
               
103-317
               

               
Cow position:
               
chr10:45457372-45457583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
159, 150
               

               
Conread position:
               
103-321
               

               
Cow position:
               
chr10:38216925-38216708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 117
               

               
Conread position:
               
110-302
               

               
Cow position:
               
chr10:63739167-63739358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
152, 117
               

               
Conread position:
               
111-429
               

               
Cow position:
               
chr10:49716971-49717278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
254, 114
               

               
Conread position:
               
112-260
               

               
Cow position:
               
chr10:60043662-60043517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
112-296
               

               
Cow position:
               
chr10:49991978-49992155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 34
               

               
Conread position:
               
112-333
               

               
Cow position:
               
chr10:63382964-63382745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 127
               

               
Conread position:
               
112-430
               

               
Cow position:
               
chr10:15411465-15411150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
133, 91
               

               
Conread position:
               
114-366
               

               
Cow position:
               
chr10:21031052-21031300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
131, 106
               

               
Conread position:
               
115-312
               

               
Cow position:
               
chr10:66131234-66131429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
123, 139
               

               
Conread position:
               
115-375
               

               
Cow position:
               
chr10:18576976-18576717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
124, 140
               

               
Conread position:
               
115-377
               

               
Cow position:
               
chr10:60871940-60871677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
147, 187
               

               
Conread position:
               
115-429
               

               
Cow position:
               
chr10:56667771-56668078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
88, 35
               

               
Conread position:
               
116-291
               

               
Cow position:
               
chr10:27429076-27429252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
129, 140
               

               
Conread position:
               
116-338
               

               
Cow position:
               
chr10:55274365-55274145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
146, 156
               

               
Conread position:
               
120-341
               

               
Cow position:
               
chr10:45340384-45340167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
142, 76
               

               
Conread position:
               
121-361
               

               
Cow position:
               
chr10:35087992-35088222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
124, 132
               

               
Conread position:
               
122-429
               

               
Cow position:
               
chr10:55372023-55371725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
140, 72
               

               
Conread position:
               
126-324
               

               
Cow position:
               
chr10:38465452-38465254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
113, 182
               

               
Conread position:
               
128-287
               

               
Cow position:
               
chr10:68095379-68095221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
107, 130
               

               
Conread position:
               
129-316
               

               
Cow position:
               
chr10:47663730-47663917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
133, 123
               

               
Conread position:
               
130-307
               

               
Cow position:
               
chr10:316274-316451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
114, 126
               

               
Conread position:
               
140-429
               

               
Cow position:
               
chr10:68317623-68317344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
27, 17
               

               
Conread position:
               
144-305
               

               
Cow position:
               
chr10:17121853-17121690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
153-429
               

               
Cow position:
               
chr10:24671502-24671229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
92, 5
               

               
Conread position:
               
95-346
               

               
Cow position:
               
chr11:20525338-20525089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
167, 75
               

               
Conread position:
               
109-263
               

               
Cow position:
               
chr11:647534-647687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
109-353
               

               
Cow position:
               
chr11:58426803-58427044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
153, 146
               

               
Conread position:
               
110-358
               

               
Cow position:
               
chr11:61515613-61515869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
153, 137
               

               
Conread position:
               
110-423
               

               
Cow position:
               
chr11:17000092-16999786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 11
               

               
Conread position:
               
111-312
               

               
Cow position:
               
chr11:59956395-59956195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
128, 28
               

               
Conread position:
               
112-301
               

               
Cow position:
               
chr11:73322184-73321994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
133, 183
               

               
Conread position:
               
112-370
               

               
Cow position:
               
chr11:28639415-28639154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
118, 18
               

               
Conread position:
               
112-377
               

               
Cow position:
               
chr11:10120672-10120931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
133, 69
               

               
Conread position:
               
113-314
               

               
Cow position:
               
chr11:34690212-34690415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
113-334
               

               
Cow position:
               
chr11:56111180-56110962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
132, 61
               

               
Conread position:
               
114-278
               

               
Cow position:
               
chr11:11772678-11772843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
31, 23
               

               
Conread position:
               
114-291
               

               
Cow position:
               
chr11:75154948-75155126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
131, 43
               

               
Conread position:
               
114-377
               

               
Cow position:
               
chr11:21835037-21835295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
148, 12
               

               
Conread position:
               
115-299
               

               
Cow position:
               
chr11:64699930-64700114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
130, 108
               

               
Conread position:
               
115-364
               

               
Cow position:
               
chr11:84175601-84175351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
147, 121
               

               
Conread position:
               
120-305
               

               
Cow position:
               
chr11:55098317-55098133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
143, 124
               

               
Conread position:
               
121-307
               

               
Cow position:
               
chr11:56194688-56194873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
118, 69
               

               
Conread position:
               
121-323
               

               
Cow position:
               
chr11:11487519-11487315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
55, 48
               

               
Conread position:
               
126-370
               

               
Cow position:
               
chr11:46034339-46034573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
136, 55
               

               
Conread position:
               
127-334
               

               
Cow position:
               
chr11:55754615-55754411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
118, 96
               

               
Conread position:
               
128-293
               

               
Cow position:
               
chr11:18337135-18337301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
128-300
               

               
Cow position:
               
chr11:12251849-12251677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
88, 106
               

               
Conread position:
               
128-429
               

               
Cow position:
               
chr11:44024335-44024042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
111, 29
               

               
Conread position:
               
129-344
               

               
Cow position:
               
chr11:42515105-42514887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
90, 25
               

               
Conread position:
               
129-418
               

               
Cow position:
               
chr11:10170970-10170685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
116, 9
               

               
Conread position:
               
130-297
               

               
Cow position:
               
chr11:43847194-43847362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
73, 119
               

               
Conread position:
               
130-377
               

               
Cow position:
               
chr11:37780328-37780091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
235, 117
               

               
Conread position:
               
138-336
               

               
Cow position:
               
chr11:56858225-56858029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
122, 157
               

               
Conread position:
               
138-429
               

               
Cow position:
               
chr11:51480051-51479768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
104, 93
               

               
Conread position:
               
109-299
               

               
Cow position:
               
chr12:14372153-14372345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
111-291
               

               
Cow position:
               
chr12:10506514-10506332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
63, 10
               

               
Conread position:
               
111-292
               

               
Cow position:
               
chr12:17018695-17018514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
134, 105
               

               
Conread position:
               
111-347
               

               
Cow position:
               
chr12:28087811-28087578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
134, 142
               

               
Conread position:
               
112-290
               

               
Cow position:
               
chr12:22252373-22252548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
149, 29
               

               
Conread position:
               
112-299
               

               
Cow position:
               
chr12:3891745-3891929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
84, 55
               

               
Conread position:
               
112-379
               

               
Cow position:
               
chr12:6652227-6651962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
109, 69
               

               
Conread position:
               
115-305
               

               
Cow position:
               
chr12:37844880-37844690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
130, 23
               

               
Conread position:
               
115-378
               

               
Cow position:
               
chr12:12022135-12022389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
137, 23
               

               
Conread position:
               
116-336
               

               
Cow position:
               
chr12:5856954-5856738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
147, 58
               

               
Conread position:
               
116-337
               

               
Cow position:
               
chr12:38897543-38897765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
126, 189
               

               
Conread position:
               
116-429
               

               
Cow position:
               
chr12:14223612-14223918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
146, 59
               

               
Conread position:
               
117-290
               

               
Cow position:
               
chr12:38196061-38195888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
145, 115
               

               
Conread position:
               
121-307
               

               
Cow position:
               
chr12:15523853-15523668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
124, 116
               

               
Conread position:
               
121-322
               

               
Cow position:
               
chr12:29817812-29817611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
124, 180
               

               
Conread position:
               
121-417
               

               
Cow position:
               
chr12:9573615-9573320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
100, 132
               

               
Conread position:
               
128-293
               

               
Cow position:
               
chr12:31527063-31526897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 29
               

               
Conread position:
               
128-307
               

               
Cow position:
               
chr12:27815314-27815136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
128-427
               

               
Cow position:
               
chr12:30958563-30958258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
117, 275
               

               
Conread position:
               
142-340
               

               
Cow position:
               
chr12:38554134-38554329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
119, 89
               

               
Conread position:
               
88-291
               

               
Cow position:
               
chr13:25925738-25925938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
182, 10
               

               
Conread position:
               
105-236
               

               
Cow position:
               
chr13:12544666-12544797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
113-389
               

               
Cow position:
               
chr13:48087339-48087615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
132, 145
               

               
Conread position:
               
114-234
               

               
Cow position:
               
chr13:6268076-6268196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
114-378
               

               
Cow position:
               
chr13:2565381-2565638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
148, 117
               

               
Conread position:
               
115-423
               

               
Cow position:
               
chr13:20365567-20365870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
130, 52
               

               
Conread position:
               
116-428
               

               
Cow position:
               
chr13:5035815-5036117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
146, 30
               

               
Conread position:
               
121-376
               

               
Cow position:
               
chr13:50649810-50649555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 20
               

               
Conread position:
               
122-429
               

               
Cow position:
               
chr13:54770072-54769777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
113, 126
               

               
Conread position:
               
128-315
               

               
Cow position:
               
chr13:10353770-10353587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
48, 15
               

               
Conread position:
               
128-379
               

               
Cow position:
               
chr13:46516751-46517004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
168, 51
               

               
Conread position:
               
91-334
               

               
Cow position:
               
chr14:1609541-1609306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 78
               

               
Conread position:
               
112-297
               

               
Cow position:
               
chr14:43264964-43265149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
127, 157
               

               
Conread position:
               
112-305
               

               
Cow position:
               
chr14:43016190-43015996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
114-302
               

               
Cow position:
               
chr14:22128703-22128892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
30, 135
               

               
Conread position:
               
114-377
               

               
Cow position:
               
chr14:26161827-26162088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
131, 166
               

               
Conread position:
               
115-429
               

               
Cow position:
               
chr14:18255433-18255135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
152, 18
               

               
Conread position:
               
116-334
               

               
Cow position:
               
chr14:41173557-41173342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
121-569
               

               
Cow position:
               
chr14:30050928-30050478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
124, 132
               

               
Conread position:
               
126-305
               

               
Cow position:
               
chr14:18960985-18961166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
111, 127
               

               
Conread position:
               
126-371
               

               
Cow position:
               
chr14:5505929-5505673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
119, 53
               

               
Conread position:
               
127-334
               

               
Cow position:
               
chr14:8660472-8660268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
110, 126
               

               
Conread position:
               
128-378
               

               
Cow position:
               
chr14:8494115-8494360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
29, 20
               

               
Conread position:
               
134-364
               

               
Cow position:
               
chr14:42135282-42135058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
111, 120
               

               
Conread position:
               
143-342
               

               
Cow position:
               
chr14:23147113-23146914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
96, 64
               

               
Conread position:
               
158-377
               

               
Cow position:
               
chr14:15664237-15664022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
87, 34
               

               
Conread position:
               
100-307
               

               
Cow position:
               
chr15:20328071-20328280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
53, 129
               

               
Conread position:
               
107-307
               

               
Cow position:
               
chr15:6867110-6867305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
138, 72
               

               
Conread position:
               
112-368
               

               
Cow position:
               
chr15:10718224-10717978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
239, 75
               

               
Conread position:
               
114-289
               

               
Cow position:
               
chr15:33750588-33750411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 58
               

               
Conread position:
               
114-364
               

               
Cow position:
               
chr15:37059426-37059679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
42, 104
               

               
Conread position:
               
114-370
               

               
Cow position:
               
chr15:19310600-19310849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
140, 76
               

               
Conread position:
               
114-427
               

               
Cow position:
               
chr15:23542552-23542228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
131, 245
               

               
Conread position:
               
115-338
               

               
Cow position:
               
chr15:42670890-42671111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
147, 183
               

               
Conread position:
               
121-340
               

               
Cow position:
               
chr15:1807231-1807016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
124, 66
               

               
Conread position:
               
126-305
               

               
Cow position:
               
chr15:41026046-41025865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr15:27977950-27978167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
135, 126
               

               
Conread position:
               
128-307
               

               
Cow position:
               
chr15:38378029-38378209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
126, 119
               

               
Conread position:
               
129-343
               

               
Cow position:
               
chr15:29371021-29371235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
110, 46
               

               
Conread position:
               
129-368
               

               
Cow position:
               
chr15:4938843-4938599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
116, 173
               

               
Conread position:
               
142-370
               

               
Cow position:
               
chr15:20367274-20367045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
99, 89
               

               
Conread position:
               
150-336
               

               
Cow position:
               
chr15:40998238-40998421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
112, 123
               

               
Conread position:
               
83-377
               

               
Cow position:
               
chr16:134794-135087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 217
               

               
Conread position:
               
95-292
               

               
Cow position:
               
chr16:14285339-14285138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
20, 96
               

               
Conread position:
               
100-338
               

               
Cow position:
               
chr16:32991627-32991856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
158, 16
               

               
Conread position:
               
109-429
               

               
Cow position:
               
chr16:15814347-15814665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
138, 184
               

               
Conread position:
               
111-225
               

               
Cow position:
               
chr16:51995731-51995616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
111-312
               

               
Cow position:
               
chr16:20681215-20681013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
134, 53
               

               
Conread position:
               
111-340
               

               
Cow position:
               
chr16:11782255-11782483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
78, 189
               

               
Conread position:
               
112-314
               

               
Cow position:
               
chr16:54506510-54506710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
93, 25
               

               
Conread position:
               
112-376
               

               
Cow position:
               
chr16:31475725-31475985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
133, 36
               

               
Conread position:
               
112-380
               

               
Cow position:
               
chr16:17939037-17939303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
148, 23
               

               
Conread position:
               
112-425
               

               
Cow position:
               
chr16:43021974-43021672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
130, 9
               

               
Conread position:
               
114-297
               

               
Cow position:
               
chr16:32032147-32031963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
148, 160
               

               
Conread position:
               
115-346
               

               
Cow position:
               
chr16:43054725-43054499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
130, 117
               

               
Conread position:
               
121-299
               

               
Cow position:
               
chr16:44503007-44503185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
124, 108
               

               
Conread position:
               
121-339
               

               
Cow position:
               
chr16:7896973-7896761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
124, 29
               

               
Conread position:
               
122-291
               

               
Cow position:
               
chr16:12327586-12327421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
128-305
               

               
Cow position:
               
chr16:7916826-7916650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
126, 53
               

               
Conread position:
               
128-429
               

               
Cow position:
               
chr16:21966168-21966463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
111, 42
               

               
Conread position:
               
142-317
               

               
Cow position:
               
chr16:294584-294764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
143-429
               

               
Cow position:
               
chr16:53104659-53104931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
93, 29
               

               
Conread position:
               
104-293
               

               
Cow position:
               
chr17:4911296-4911482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
158, 112
               

               
Conread position:
               
105-299
               

               
Cow position:
               
chr17:22028100-22028293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
134, 68
               

               
Conread position:
               
110-317
               

               
Cow position:
               
chr17:12615637-12615846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
111-307
               

               
Cow position:
               
chr17:16041302-16041104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
112-429
               

               
Cow position:
               
chr17:37427920-37428220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
253, 47
               

               
Conread position:
               
115-336
               

               
Cow position:
               
chr17:1266644-1266427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
124, 139
               

               
Conread position:
               
116-355
               

               
Cow position:
               
chr17:20891465-20891700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
189, 57
               

               
Conread position:
               
121-293
               

               
Cow position:
               
chr17:15468843-15469015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
141, 59
               

               
Conread position:
               
126-293
               

               
Cow position:
               
chr17:19533311-19533146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 115
               

               
Conread position:
               
127-299
               

               
Cow position:
               
chr17:11194438-11194608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
112, 11
               

               
Conread position:
               
128-377
               

               
Cow position:
               
chr17:3404719-3404470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
103, 68
               

               
Conread position:
               
128-429
               

               
Cow position:
               
chr17:32919493-32919784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
117, 96
               

               
Conread position:
               
129-429
               

               
Cow position:
               
chr17:12021749-12021452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
116, 58
               

               
Conread position:
               
144-441
               

               
Cow position:
               
chr17:28539176-28538888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
101, 55
               

               
Conread position:
               
161-379
               

               
Cow position:
               
chr17:37832750-37832533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
183, 83
               

               
Conread position:
               
182-371
               

               
Cow position:
               
chr17:31588330-31588141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
63, 71
               

               
Conread position:
               
106-299
               

               
Cow position:
               
chr18:10063286-10063479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
139, 147
               

               
Conread position:
               
111-293
               

               
Cow position:
               
chr18:36631480-36631663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
134, 120
               

               
Conread position:
               
112-291
               

               
Cow position:
               
chr18:33343555-33343376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
130, 45
               

               
Conread position:
               
112-359
               

               
Cow position:
               
chr18:26468648-26468892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
113-429
               

               
Cow position:
               
chr18:11891317-11891010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
149, 134
               

               
Conread position:
               
114-299
               

               
Cow position:
               
chr18:43036824-43036646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
147, 105
               

               
Conread position:
               
114-377
               

               
Cow position:
               
chr18:16507381-16507639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
131, 27
               

               
Conread position:
               
116-376
               

               
Cow position:
               
chr18:20241539-20241279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
206, 118
               

               
Conread position:
               
121-292
               

               
Cow position:
               
chr18:8506886-8506715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
141, 12
               

               
Conread position:
               
121-296
               

               
Cow position:
               
chr18:53821705-53821529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
122-316
               

               
Cow position:
               
chr18:40260876-40260683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
126, 115
               

               
Conread position:
               
123-297
               

               
Cow position:
               
chr18:6746813-6746639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
112, 92
               

               
Conread position:
               
128-368
               

               
Cow position:
               
chr18:26304415-26304176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
111, 174
               

               
Conread position:
               
63-429
               

               
Cow position:
               
chr19:10215277-10215637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 195
               

               
Conread position:
               
103-342
               

               
Cow position:
               
chr19:25674337-25674567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
142, 23
               

               
Conread position:
               
106-429
               

               
Cow position:
               
chr19:7470081-7470396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
156, 75
               

               
Conread position:
               
114-305
               

               
Cow position:
               
chr19:25096306-25096499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
114-347
               

               
Cow position:
               
chr19:54753309-54753080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
115, 66
               

               
Conread position:
               
115-377
               

               
Cow position:
               
chr19:44502961-44502698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
147, 114
               

               
Conread position:
               
122-357
               

               
Cow position:
               
chr19:27206307-27206538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
139, 62
               

               
Conread position:
               
132-296
               

               
Cow position:
               
chr19:48950660-48950825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
140-387
               

               
Cow position:
               
chr19:38560840-38561087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
105, 113
               

               
Conread position:
               
159-375
               

               
Cow position:
               
chr19:7545835-7545630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
98-235
               

               
Cow position:
               
chr20:5769848-5769983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
110-291
               

               
Cow position:
               
chr20:9217103-9217287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 72
               

               
Conread position:
               
112-301
               

               
Cow position:
               
chr20:8887051-8887249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
79, 39
               

               
Conread position:
               
112-429
               

               
Cow position:
               
chr20:10663424-10663111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
133, 144
               

               
Conread position:
               
112-429
               

               
Cow position:
               
chr20:12006813-12007121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
133, 141
               

               
Conread position:
               
113-334
               

               
Cow position:
               
chr20:19872094-19872309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
126, 38
               

               
Conread position:
               
114-299
               

               
Cow position:
               
chr20:11616657-11616472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
140, 27
               

               
Conread position:
               
114-364
               

               
Cow position:
               
chr20:4252673-4252428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
121, 34
               

               
Conread position:
               
115-347
               

               
Cow position:
               
chr20:4264348-4264577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
183, 0
               

               
Conread position:
               
115-347
               

               
Cow position:
               
chr20:11517403-11517172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
121-430
               

               
Cow position:
               
chr20:34075157-34074848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
126, 35
               

               
Conread position:
               
122-380
               

               
Cow position:
               
chr20:38002909-38003163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
140, 37
               

               
Conread position:
               
126-305
               

               
Cow position:
               
chr20:22446692-22446873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
119, 127
               

               
Conread position:
               
126-305
               

               
Cow position:
               
chr20:27988695-27988876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
137, 64
               

               
Conread position:
               
126-364
               

               
Cow position:
               
chr20:28906644-28906410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
135, 153
               

               
Conread position:
               
128-376
               

               
Cow position:
               
chr20:1005501-1005745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
136, 52
               

               
Conread position:
               
131-336
               

               
Cow position:
               
chr20:22032703-22032908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 49
               

               
Conread position:
               
150-341
               

               
Cow position:
               
chr20:3317704-3317902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
99-305
               

               
Cow position:
               
chr21:47975281-47975075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
198, 12
               

               
Conread position:
               
101-282
               

               
Cow position:
               
chr21:30591790-30591612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
144, 13
               

               
Conread position:
               
110-335
               

               
Cow position:
               
chr21:39334287-39334067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
135, 69
               

               
Conread position:
               
111-298
               

               
Cow position:
               
chr21:8390948-8390763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
134, 10
               

               
Conread position:
               
111-305
               

               
Cow position:
               
chr21:26532556-26532366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
75, 19
               

               
Conread position:
               
114-286
               

               
Cow position:
               
chr21:35398261-35398431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
148, 89
               

               
Conread position:
               
114-334
               

               
Cow position:
               
chr21:41192010-41191795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
131, 43
               

               
Conread position:
               
121-335
               

               
Cow position:
               
chr21:38072348-38072137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
133, 73
               

               
Conread position:
               
122-289
               

               
Cow position:
               
chr21:19690587-19690420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
127-297
               

               
Cow position:
               
chr21:4510799-4510969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
39, 56
               

               
Conread position:
               
128-342
               

               
Cow position:
               
chr21:22377269-22377479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
77, 62
               

               
Conread position:
               
145-377
               

               
Cow position:
               
chr21:21430837-21430608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 14
               

               
Conread position:
               
161-377
               

               
Cow position:
               
chr21:9955076-9955286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
100, 23
               

               
Conread position:
               
162-429
               

               
Cow position:
               
chr21:40815101-40814843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
24, 92
               

               
Conread position:
               
108-256
               

               
Cow position:
               
chr22:27159981-27160129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
131, 27
               

               
Conread position:
               
111-292
               

               
Cow position:
               
chr22:20903847-20903668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
161, 76
               

               
Conread position:
               
111-299
               

               
Cow position:
               
chr22:12640279-12640096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
111-429
               

               
Cow position:
               
chr22:32510289-32510600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
182, 62
               

               
Conread position:
               
114-250
               

               
Cow position:
               
chr22:14494694-14494831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
114-299
               

               
Cow position:
               
chr22:43561418-43561234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
114-430
               

               
Cow position:
               
chr22:27505948-27505641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
246, 123
               

               
Conread position:
               
126-353
               

               
Cow position:
               
chr22:25739272-25739054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
136, 106
               

               
Conread position:
               
127-305
               

               
Cow position:
               
chr22:26066565-26066392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
138, 104
               

               
Conread position:
               
127-372
               

               
Cow position:
               
chr22:32476071-32475832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
136, 60
               

               
Conread position:
               
141-370
               

               
Cow position:
               
chr22:35610904-35610677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
98, 103
               

               
Conread position:
               
141-372
               

               
Cow position:
               
chr22:25815619-25815855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
121, 162
               

               
Conread position:
               
84-429
               

               
Cow position:
               
chr23:24759114-24758777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
12, 17
               

               
Conread position:
               
109-377
               

               
Cow position:
               
chr23:38729587-38729329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
136, 63
               

               
Conread position:
               
110-312
               

               
Cow position:
               
chr23:36179098-36179301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
68, 193
               

               
Conread position:
               
111-299
               

               
Cow position:
               
chr23:24843584-24843772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
155, 176
               

               
Conread position:
               
111-370
               

               
Cow position:
               
chr23:37410774-37411031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
134, 142
               

               
Conread position:
               
112-429
               

               
Cow position:
               
chr23:11460679-11460992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
35, 178
               

               
Conread position:
               
114-297
               

               
Cow position:
               
chr23:31505030-31505214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
55, 66
               

               
Conread position:
               
114-298
               

               
Cow position:
               
chr23:40466772-40466954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
148, 91
               

               
Conread position:
               
114-321
               

               
Cow position:
               
chr23:38244921-38245129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 40
               

               
Conread position:
               
114-429
               

               
Cow position:
               
chr23:9260832-9261143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
50, 24
               

               
Conread position:
               
114-429
               

               
Cow position:
               
chr23:37392431-37392128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
131, 139
               

               
Conread position:
               
115-341
               

               
Cow position:
               
chr23:38481580-38481802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
116-296
               

               
Cow position:
               
chr23:5843122-5842939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
121-305
               

               
Cow position:
               
chr23:27426007-27425823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
67, 52
               

               
Conread position:
               
121-429
               

               
Cow position:
               
chr23:24384581-24384902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
83, 133
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chr23:9544148-9544369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
128-260
               

               
Cow position:
               
chr23:19793612-19793744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
128-376
               

               
Cow position:
               
chr23:18390416-18390160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
129-369
               

               
Cow position:
               
chr23:27887913-27887679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
116, 87
               

               
Conread position:
               
157-373
               

               
Cow position:
               
chr23:26588240-26588030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
32, 84
               

               
Conread position:
               
101-291
               

               
Cow position:
               
chr24:143486-143296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
144, 70
               

               
Conread position:
               
106-418
               

               
Cow position:
               
chr24:17536014-17535695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
39, 63
               

               
Conread position:
               
109-350
               

               
Cow position:
               
chr24:33054310-33054549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
153, 143
               

               
Conread position:
               
113-432
               

               
Cow position:
               
chr24:20608893-20608571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
148, 123
               

               
Conread position:
               
113-432
               

               
Cow position:
               
chr24:20627065-20626743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
148, 123
               

               
Conread position:
               
121-291
               

               
Cow position:
               
chr24:38654288-38654117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
121-375
               

               
Cow position:
               
chr24:17823495-17823249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
47, 133
               

               
Conread position:
               
121-424
               

               
Cow position:
               
chr24:23111898-23112186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
141, 96
               

               
Conread position:
               
123-369
               

               
Cow position:
               
chr24:21797828-21797575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
139, 124
               

               
Conread position:
               
98-380
               

               
Cow position:
               
chr25:22764750-22764477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
177, 18
               

               
Conread position:
               
103-376
               

               
Cow position:
               
chr25:14326987-14326727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
151, 68
               

               
Conread position:
               
110-307
               

               
Cow position:
               
chr25:23924350-23924153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
123, 192
               

               
Conread position:
               
112-379
               

               
Cow position:
               
chr25:16094055-16093792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
133, 110
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr25:19137438-19137258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
131, 139
               

               
Conread position:
               
114-307
               

               
Cow position:
               
chr25:14084973-14084781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
31, 24
               

               
Conread position:
               
114-307
               

               
Cow position:
               
chr25:17527418-17527611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
125, 188
               

               
Conread position:
               
116-306
               

               
Cow position:
               
chr25:406761-406570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
162, 118
               

               
Conread position:
               
116-307
               

               
Cow position:
               
chr25:26768556-26768366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
115, 53
               

               
Conread position:
               
121-243
               

               
Cow position:
               
chr25:5488121-5488244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
121-348
               

               
Cow position:
               
chr25:12645035-12645254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
122-297
               

               
Cow position:
               
chr25:17643162-17642987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
117, 35
               

               
Conread position:
               
126-334
               

               
Cow position:
               
chr25:10775265-10775065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
119, 101
               

               
Conread position:
               
126-378
               

               
Cow position:
               
chr25:28039743-28039983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
135, 154
               

               
Conread position:
               
127-412
               

               
Cow position:
               
chr25:19475955-19475669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
118, 30
               

               
Conread position:
               
128-334
               

               
Cow position:
               
chr25:4944851-4944648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
134, 171
               

               
Conread position:
               
128-429
               

               
Cow position:
               
chr25:24408168-24408465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
117, 208
               

               
Conread position:
               
129-291
               

               
Cow position:
               
chr25:15271032-15270868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 56
               

               
Conread position:
               
142-429
               

               
Cow position:
               
chr25:8888844-8888566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
103, 44
               

               
Conread position:
               
148-373
               

               
Cow position:
               
chr25:16905346-16905572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 123
               

               
Conread position:
               
105-294
               

               
Cow position:
               
chr26:12521367-12521177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
140, 151
               

               
Conread position:
               
106-275
               

               
Cow position:
               
chr26:16779011-16779181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
133, 147
               

               
Conread position:
               
109-429
               

               
Cow position:
               
chr26:26369513-26369839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
192, 286
               

               
Conread position:
               
113-376
               

               
Cow position:
               
chr26:17205812-17206076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
44, 196
               

               
Conread position:
               
114-334
               

               
Cow position:
               
chr26:20816132-20815926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
140, 59
               

               
Conread position:
               
116-378
               

               
Cow position:
               
chr26:14712588-14712327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
98, 65
               

               
Conread position:
               
121-299
               

               
Cow position:
               
chr26:31540943-31541121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
124, 24
               

               
Conread position:
               
122-429
               

               
Cow position:
               
chr26:24579433-24579727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
106, 31
               

               
Conread position:
               
127-297
               

               
Cow position:
               
chr26:22682343-22682173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
123, 130
               

               
Conread position:
               
131-389
               

               
Cow position:
               
chr26:15130519-15130772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
103, 85
               

               
Conread position:
               
114-296
               

               
Cow position:
               
chr27:12762872-12763054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
125, 103
               

               
Conread position:
               
114-305
               

               
Cow position:
               
chr27:14186209-14186398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
153, 52
               

               
Conread position:
               
114-348
               

               
Cow position:
               
chr27:22509850-22510079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
148, 154
               

               
Conread position:
               
114-359
               

               
Cow position:
               
chr27:31544675-31544428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
73, 144
               

               
Conread position:
               
121-343
               

               
Cow position:
               
chr27:26217633-26217844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
216, 60
               

               
Conread position:
               
121-355
               

               
Cow position:
               
chr27:14815894-14816125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
115, 174
               

               
Conread position:
               
133-296
               

               
Cow position:
               
chr27:13828619-13828785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
87-428
               

               
Cow position:
               
chr28:20039798-20039472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
167, 14
               

               
Conread position:
               
87-438
               

               
Cow position:
               
chr28:3690299-3690641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
149, 27
               

               
Conread position:
               
109-308
               

               
Cow position:
               
chr28:33876938-33876740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
154, 29
               

               
Conread position:
               
112-260
               

               
Cow position:
               
chr28:29698584-29698439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
112-314
               

               
Cow position:
               
chr28:17134646-17134446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
33, 120
               

               
Conread position:
               
113-236
               

               
Cow position:
               
chr28:3723244-3723121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
113-304
               

               
Cow position:
               
chr28:2852446-2852637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
149, 110
               

               
Conread position:
               
114-290
               

               
Cow position:
               
chr28:33715831-33715652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
107, 140
               

               
Conread position:
               
114-299
               

               
Cow position:
               
chr28:21038574-21038387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
60, 66
               

               
Conread position:
               
114-302
               

               
Cow position:
               
chr28:28707376-28707193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
122, 39
               

               
Conread position:
               
114-419
               

               
Cow position:
               
chr28:22499823-22499514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
125, 7
               

               
Conread position:
               
114-429
               

               
Cow position:
               
chr28:4107182-4106878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
131, 139
               

               
Conread position:
               
115-429
               

               
Cow position:
               
chr28:12986863-12987174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
229, 88
               

               
Conread position:
               
116-377
               

               
Cow position:
               
chr28:33952416-33952680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
39, 116
               

               
Conread position:
               
127-340
               

               
Cow position:
               
chr28:22045268-22045473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
118, 23
               

               
Conread position:
               
127-377
               

               
Cow position:
               
chr28:25284194-25284447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
32, 100
               

               
Conread position:
               
109-343
               

               
Cow position:
               
chr29:26113992-26114227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
95, 194
               

               
Conread position:
               
109-377
               

               
Cow position:
               
chr29:20492389-20492669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
119, 150
               

               
Conread position:
               
110-291
               

               
Cow position:
               
chr29:19765822-19765640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
118, 11
               

               
Conread position:
               
111-299
               

               
Cow position:
               
chr29:379440-379253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
147, 110
               

               
Conread position:
               
113-287
               

               
Cow position:
               
chr29:12592962-12592786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
115-290
               

               
Cow position:
               
chr29:25968476-25968650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
130, 97
               

               
Conread position:
               
115-315
               

               
Cow position:
               
chr29:438640-438442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
130, 75
               

               
Conread position:
               
121-288
               

               
Cow position:
               
chr29:37704086-37703913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
56, 137
               

               
Conread position:
               
122-427
               

               
Cow position:
               
chr29:19213823-19214126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
123, 172
               

               
Conread position:
               
123-342
               

               
Cow position:
               
chr29:17374287-17374505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
122, 130
               

               
Conread position:
               
124-299
               

               
Cow position:
               
chr29:30568711-30568885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
114, 54
               

               
Conread position:
               
126-320
               

               
Cow position:
               
chr29:14077439-14077246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
53, 128
               

               
Conread position:
               
62-579
               

               
Cow position:
               
chr8:55717762-55718266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 108
               

               
Conread position:
               
101-304
               

               
Cow position:
               
chr8:30120355-30120561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
67, 153
               

               
Conread position:
               
103-342
               

               
Cow position:
               
chr8:43742343-43742110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
107-293
               

               
Cow position:
               
chr8:21976467-21976282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
138, 146
               

               
Conread position:
               
111-300
               

               
Cow position:
               
chr8:51482629-51482818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
135, 144
               

               
Conread position:
               
111-429
               

               
Cow position:
               
chr8:5962575-5962261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
70, 159
               

               
Conread position:
               
112-330
               

               
Cow position:
               
chr8:60375701-60375915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
133, 36
               

               
Conread position:
               
113-330
               

               
Cow position:
               
chr8:26860731-26860515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 141
               

               
Conread position:
               
114-235
               

               
Cow position:
               
chr8:26157808-26157929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr8:8003640-8003461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
125, 27
               

               
Conread position:
               
114-305
               

               
Cow position:
               
chr8:16458420-16458227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
114-332
               

               
Cow position:
               
chr8:38442541-38442326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
131, 139
               

               
Conread position:
               
121-380
               

               
Cow position:
               
chr8:31760219-31759969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
133, 46
               

               
Conread position:
               
122-304
               

               
Cow position:
               
chr8:28091695-28091513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
106, 59
               

               
Conread position:
               
122-427
               

               
Cow position:
               
chr8:34014440-34014750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
117, 278
               

               
Conread position:
               
125-307
               

               
Cow position:
               
chr8:2173767-2173584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
120, 33
               

               
Conread position:
               
126-292
               

               
Cow position:
               
chr8:24660373-24660537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
126-369
               

               
Cow position:
               
chr8:21187583-21187823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
32, 128
               

               
Conread position:
               
128-389
               

               
Cow position:
               
chr8:45556692-45556956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
117, 176
               

               
Conread position:
               
141-414
               

               
Cow position:
               
chr8:31722152-31722425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
104, 44
               

               
Conread position:
               
60-346
               

               
Cow position:
               
chr9:10121161-10120875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
20, 180
               

               
Conread position:
               
103-429
               

               
Cow position:
               
chr9:47714179-47714508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
9, 151
               

               
Conread position:
               
105-341
               

               
Cow position:
               
chr9:42809246-42809474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
157, 9
               

               
Conread position:
               
111-299
               

               
Cow position:
               
chr9:4839409-4839224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
134, 62
               

               
Conread position:
               
111-307
               

               
Cow position:
               
chr9:43714950-43715149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
77, 16
               

               
Conread position:
               
111-425
               

               
Cow position:
               
chr9:51711837-51712150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
151, 46
               

               
Conread position:
               
112-422
               

               
Cow position:
               
chr9:35207867-35207555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
133, 101
               

               
Conread position:
               
113-417
               

               
Cow position:
               
chr9:26490260-26490552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
132, 24
               

               
Conread position:
               
114-235
               

               
Cow position:
               
chr9:9663453-9663331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
114-293
               

               
Cow position:
               
chr9:20019820-20019639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
125, 24
               

               
Conread position:
               
114-305
               

               
Cow position:
               
chr9:42756840-42756643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
115, 24
               

               
Conread position:
               
114-358
               

               
Cow position:
               
chr9:34077964-34077724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
131, 27
               

               
Conread position:
               
114-429
               

               
Cow position:
               
chr9:7471129-7470826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
131, 155
               

               
Conread position:
               
115-285
               

               
Cow position:
               
chr9:50193407-50193236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
130, 141
               

               
Conread position:
               
116-377
               

               
Cow position:
               
chr9:40405626-40405888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
49, 41
               

               
Conread position:
               
121-378
               

               
Cow position:
               
chr9:39786770-39787025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
133, 60
               

               
Conread position:
               
121-379
               

               
Cow position:
               
chr9:39135455-39135202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
124, 99
               

               
Conread position:
               
122-377
               

               
Cow position:
               
chr9:31307229-31307489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
64, 136
               

               
Conread position:
               
128-334
               

               
Cow position:
               
chr9:20502110-20501899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
60, 109
               

               
Conread position:
               
131-378
               

               
Cow position:
               
chr9:18640707-18640459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
125, 106
               

               
Conread position:
               
140-429
               

               
Cow position:
               
chr9:55254435-55254155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
122, 34
               

               
Conread position:
               
162-355
               

               
Cow position:
               
chr9:12387642-12387832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 94
               

               
Conread position:
               
86-315
               

               
Cow position:
               
chrX:25833956-25834185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
153, 12
               

               
Conread position:
               
111-300
               

               
Cow position:
               
chrX:37176466-37176278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
122, 30
               

               
Conread position:
               
112-268
               

               
Cow position:
               
chrX:26580849-26580693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
150, 45
               

               
Conread position:
               
112-297
               

               
Cow position:
               
chrX:4606678-4606864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
91, 145
               

               
Conread position:
               
112-305
               

               
Cow position:
               
chrX:31286653-31286458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
133, 141
               

               
Conread position:
               
112-366
               

               
Cow position:
               
chrX:15498321-15498071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
142, 135
               

               
Conread position:
               
112-380
               

               
Cow position:
               
chrX:5877530-5877249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
134, 45
               

               
Conread position:
               
112-430
               

               
Cow position:
               
chrX:29712402-29712089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
133, 45
               

               
Conread position:
               
113-429
               

               
Cow position:
               
chrX:2173947-2174260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
132, 68
               

               
Conread position:
               
114-291
               

               
Cow position:
               
chrX:33980686-33980509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
148, 73
               

               
Conread position:
               
114-297
               

               
Cow position:
               
chrX:36102001-36102185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 67
               

               
Conread position:
               
114-307
               

               
Cow position:
               
chrX:30465372-30465178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
140, 123
               

               
Conread position:
               
114-429
               

               
Cow position:
               
chrX:27719835-27720148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
148, 53
               

               
Conread position:
               
120-307
               

               
Cow position:
               
chrX:30268160-30268349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
124, 184
               

               
Conread position:
               
121-285
               

               
Cow position:
               
chrX:22375979-22376143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
124, 141
               

               
Conread position:
               
127-293
               

               
Cow position:
               
chrX:23897426-23897260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
118, 63
               

               
Conread position:
               
127-297
               

               
Cow position:
               
chrX:34051073-34050903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
76, 50
               

               
Conread position:
               
128-290
               

               
Cow position:
               
chrX:25464551-25464710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
117, 19
               

               
Conread position:
               
129-429
               

               
Cow position:
               
chrX:37379565-37379854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
116, 21
               

               
Conread position:
               
130-366
               

               
Cow position:
               
chrX:11972448-11972675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
115, 44
               

               
Conread position:
               
131-334
               

               
Cow position:
               
chrX:11376338-11376535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
21, 6
               

               
Conread position:
               
138-335
               

               
Cow position:
               
chrX:32864916-32865110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 91
               

               
Conread position:
               
157-377
               

               
Cow position:
               
chrX:32917022-32916802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
88, 28