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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8023P08.3
        

               
Conread position:
               
519-707
               

               
Cow position:
               
chr10:1416923-1417110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 167
               

               
Conread position:
               
525-862
               

               
Cow position:
               
chr10:38376824-38376513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
74, 115
               

               
Conread position:
               
526-862
               

               
Cow position:
               
chr10:24313060-24312730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
33, 125
               

               
Conread position:
               
527-787
               

               
Cow position:
               
chr10:8934314-8934559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
527-831
               

               
Cow position:
               
chr10:37913357-37913049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
182, 38
               

               
Conread position:
               
527-860
               

               
Cow position:
               
chr10:9576208-9575889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
72, 113
               

               
Conread position:
               
527-862
               

               
Cow position:
               
chr10:16414755-16414413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
72, 7
               

               
Conread position:
               
527-862
               

               
Cow position:
               
chr10:20553012-20553341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
72, 97
               

               
Conread position:
               
527-862
               

               
Cow position:
               
chr10:49146351-49146669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
72, 8
               

               
Conread position:
               
527-862
               

               
Cow position:
               
chr10:53674655-53674989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 7
               

               
Conread position:
               
528-862
               

               
Cow position:
               
chr10:62286383-62286727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
530-790
               

               
Cow position:
               
chr10:52046693-52046962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
530-847
               

               
Cow position:
               
chr10:28395467-28395159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
119, 54
               

               
Conread position:
               
530-859
               

               
Cow position:
               
chr10:6852104-6852423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
122, 69
               

               
Conread position:
               
530-859
               

               
Cow position:
               
chr10:16986162-16986494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
530-859
               

               
Cow position:
               
chr10:48317124-48316785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
69, 36
               

               
Conread position:
               
530-861
               

               
Cow position:
               
chr10:25149726-25150047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
36, 85
               

               
Conread position:
               
530-861
               

               
Cow position:
               
chr10:54848609-54848938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
69, 165
               

               
Conread position:
               
530-862
               

               
Cow position:
               
chr10:16645358-16645025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
24, 229
               

               
Conread position:
               
530-862
               

               
Cow position:
               
chr10:24756249-24756570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 110
               

               
Conread position:
               
530-862
               

               
Cow position:
               
chr10:34661481-34661170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
69, 109
               

               
Conread position:
               
530-862
               

               
Cow position:
               
chr10:64041918-64042246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
79, 14
               

               
Conread position:
               
531-816
               

               
Cow position:
               
chr10:26209425-26209132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 149
               

               
Conread position:
               
531-852
               

               
Cow position:
               
chr10:48513250-48512926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
68, 234
               

               
Conread position:
               
531-862
               

               
Cow position:
               
chr10:39227979-39228325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
533-657
               

               
Cow position:
               
chr10:35026314-35026438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
66, 118
               

               
Conread position:
               
533-680
               

               
Cow position:
               
chr10:55849192-55849339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
64, 92
               

               
Conread position:
               
533-689
               

               
Cow position:
               
chr10:3985263-3985419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
66, 113
               

               
Conread position:
               
533-732
               

               
Cow position:
               
chr10:22520328-22520128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
533-744
               

               
Cow position:
               
chr10:1427879-1428085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
192, 50
               

               
Conread position:
               
533-745
               

               
Cow position:
               
chr10:39304015-39303800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
533-753
               

               
Cow position:
               
chr10:24744383-24744600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
66, 77
               

               
Conread position:
               
533-754
               

               
Cow position:
               
chr10:21462073-21462298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
29, 185
               

               
Conread position:
               
533-761
               

               
Cow position:
               
chr10:54469558-54469331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
65, 36
               

               
Conread position:
               
533-767
               

               
Cow position:
               
chr10:24781023-24781257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
66, 119
               

               
Conread position:
               
533-771
               

               
Cow position:
               
chr10:10043256-10043035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
533-774
               

               
Cow position:
               
chr10:8923113-8923355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
533-774
               

               
Cow position:
               
chr10:38014201-38014441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
66, 91
               

               
Conread position:
               
533-789
               

               
Cow position:
               
chr10:27828166-27828411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
533-790
               

               
Cow position:
               
chr10:28105247-28104987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
533-791
               

               
Cow position:
               
chr10:29589005-29588749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
29, 68
               

               
Conread position:
               
533-803
               

               
Cow position:
               
chr10:10134820-10135090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
533-804
               

               
Cow position:
               
chr10:53248176-53247900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 194
               

               
Conread position:
               
533-805
               

               
Cow position:
               
chr10:45769878-45770150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
66, 77
               

               
Conread position:
               
533-807
               

               
Cow position:
               
chr10:35779066-35778796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
66, 117
               

               
Conread position:
               
533-808
               

               
Cow position:
               
chr10:11212951-11213220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
66, 77
               

               
Conread position:
               
533-808
               

               
Cow position:
               
chr10:15872036-15871765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
164, 66
               

               
Conread position:
               
533-808
               

               
Cow position:
               
chr10:24375388-24375651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
28, 34
               

               
Conread position:
               
533-808
               

               
Cow position:
               
chr10:41803058-41802797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
533-808
               

               
Cow position:
               
chr10:50609377-50609665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
93, 66
               

               
Conread position:
               
533-809
               

               
Cow position:
               
chr10:11247812-11248088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
193, 65
               

               
Conread position:
               
533-809
               

               
Cow position:
               
chr10:19549653-19549380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 119
               

               
Conread position:
               
533-813
               

               
Cow position:
               
chr10:36002034-36002314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
66, 91
               

               
Conread position:
               
533-813
               

               
Cow position:
               
chr10:39875310-39875042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
533-823
               

               
Cow position:
               
chr10:24763313-24763607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
52, 80
               

               
Conread position:
               
533-828
               

               
Cow position:
               
chr10:53973683-53973973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
66, 107
               

               
Conread position:
               
533-837
               

               
Cow position:
               
chr10:43508826-43509135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
25, 118
               

               
Conread position:
               
533-844
               

               
Cow position:
               
chr10:63276225-63276538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 120
               

               
Conread position:
               
533-845
               

               
Cow position:
               
chr10:37295827-37295526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
66, 9
               

               
Conread position:
               
533-845
               

               
Cow position:
               
chr10:47773565-47773868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
66, 99
               

               
Conread position:
               
533-852
               

               
Cow position:
               
chr10:4148315-4148643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
34, 241
               

               
Conread position:
               
533-852
               

               
Cow position:
               
chr10:24096540-24096217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
30, 50
               

               
Conread position:
               
533-852
               

               
Cow position:
               
chr10:38942263-38942587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
32, 135
               

               
Conread position:
               
533-853
               

               
Cow position:
               
chr10:35901165-35901474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
226, 66
               

               
Conread position:
               
533-854
               

               
Cow position:
               
chr10:10720837-10720518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
69, 116
               

               
Conread position:
               
533-856
               

               
Cow position:
               
chr10:747300-747628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
34, 122
               

               
Conread position:
               
533-858
               

               
Cow position:
               
chr10:35246104-35245795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
104, 66
               

               
Conread position:
               
533-859
               

               
Cow position:
               
chr10:1976485-1976158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
27, 178
               

               
Conread position:
               
533-859
               

               
Cow position:
               
chr10:7366950-7366633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
64, 145
               

               
Conread position:
               
533-860
               

               
Cow position:
               
chr10:13311571-13311904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
66, 31
               

               
Conread position:
               
533-860
               

               
Cow position:
               
chr10:18042020-18042342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
28, 85
               

               
Conread position:
               
533-860
               

               
Cow position:
               
chr10:19895234-19895554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
66, 30
               

               
Conread position:
               
533-860
               

               
Cow position:
               
chr10:30352683-30353010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 179
               

               
Conread position:
               
533-860
               

               
Cow position:
               
chr10:31401059-31400739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
67, 162
               

               
Conread position:
               
533-860
               

               
Cow position:
               
chr10:35862391-35862072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
24, 115
               

               
Conread position:
               
533-860
               

               
Cow position:
               
chr10:35868162-35867857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
533-861
               

               
Cow position:
               
chr10:1423670-1423993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
28, 75
               

               
Conread position:
               
533-861
               

               
Cow position:
               
chr10:1996826-1996513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
66, 102
               

               
Conread position:
               
533-861
               

               
Cow position:
               
chr10:20095593-20095928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 258
               

               
Conread position:
               
533-861
               

               
Cow position:
               
chr10:28152544-28152235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
66, 89
               

               
Conread position:
               
533-861
               

               
Cow position:
               
chr10:33215636-33215953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
66, 208
               

               
Conread position:
               
533-861
               

               
Cow position:
               
chr10:45379169-45378840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
34, 101
               

               
Conread position:
               
533-861
               

               
Cow position:
               
chr10:46195618-46195941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
46, 81
               

               
Conread position:
               
533-861
               

               
Cow position:
               
chr10:57059446-57059113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
70, 35
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:1978824-1978510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 28
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:2185163-2185519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
66, 199
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:2613202-2613528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 113
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:6435894-6436219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 120
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:8093478-8093161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:13391214-13390904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
66, 89
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:15817957-15817636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 101
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:16598522-16598853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
66, 82
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:17844599-17844927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
38, 69
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:19372502-19372173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
66, 113
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:21082220-21082534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
70, 118
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:22341404-22341736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
59, 30
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:22390424-22390758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 258
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:23056243-23055931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
66, 117
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:24871000-24871333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
33, 118
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:28176554-28176240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
66, 76
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:30523231-30522902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
30, 246
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:34607397-34607726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
66, 30
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:35731687-35731366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 105
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:37014471-37014798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
28, 64
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:37529430-37529112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 116
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:38370623-38370290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
66, 101
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:40737838-40738152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
24, 68
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:42745751-42746072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
32, 13
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:45370890-45371219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 186
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:50183213-50182892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
65, 115
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:52296336-52296658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
107, 64
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:52569427-52569757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 49
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:54504441-54504765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 80
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:55733764-55733448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
212, 66
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:56828482-56828158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 38
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:59571737-59572054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
69, 89
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:62353299-62353619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
66, 91
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:63940609-63940933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
66, 22
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:64182286-64182605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 129
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:65071146-65071484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
34, 119
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr10:67443270-67442959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
65, 101
               

               
Conread position:
               
533-863
               

               
Cow position:
               
chr10:67627157-67626838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
69, 17
               

               
Conread position:
               
533-864
               

               
Cow position:
               
chr10:6489705-6490042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 254
               

               
Conread position:
               
533-864
               

               
Cow position:
               
chr10:6505199-6505516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
308, 29
               

               
Conread position:
               
533-864
               

               
Cow position:
               
chr10:10120034-10120356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
66, 80
               

               
Conread position:
               
533-864
               

               
Cow position:
               
chr10:11080797-11081136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
69, 223
               

               
Conread position:
               
533-864
               

               
Cow position:
               
chr10:13765329-13765000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
66, 96
               

               
Conread position:
               
533-864
               

               
Cow position:
               
chr10:22528068-22527756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
73, 90
               

               
Conread position:
               
533-864
               

               
Cow position:
               
chr10:24276897-24276566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
66, 107
               

               
Conread position:
               
533-864
               

               
Cow position:
               
chr10:31027810-31027477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 89
               

               
Conread position:
               
533-864
               

               
Cow position:
               
chr10:31362372-31362055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
226, 66
               

               
Conread position:
               
533-864
               

               
Cow position:
               
chr10:34655277-34654947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 270
               

               
Conread position:
               
533-864
               

               
Cow position:
               
chr10:37235714-37235385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
66, 90
               

               
Conread position:
               
533-864
               

               
Cow position:
               
chr10:37818721-37818392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 166
               

               
Conread position:
               
533-864
               

               
Cow position:
               
chr10:38240919-38241244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
25, 62
               

               
Conread position:
               
533-864
               

               
Cow position:
               
chr10:45871352-45871682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
24, 121
               

               
Conread position:
               
534-726
               

               
Cow position:
               
chr10:41941740-41941547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
63, 112
               

               
Conread position:
               
534-743
               

               
Cow position:
               
chr10:32417190-32417398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
65, 116
               

               
Conread position:
               
534-748
               

               
Cow position:
               
chr10:65424062-65423854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
65, 116
               

               
Conread position:
               
534-750
               

               
Cow position:
               
chr10:15462326-15462543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
65, 128
               

               
Conread position:
               
534-783
               

               
Cow position:
               
chr10:23936321-23936561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
534-791
               

               
Cow position:
               
chr10:37668321-37668064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 222
               

               
Conread position:
               
534-807
               

               
Cow position:
               
chr10:29252002-29252272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
68, 180
               

               
Conread position:
               
534-808
               

               
Cow position:
               
chr10:51696579-51696852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
65, 76
               

               
Conread position:
               
534-811
               

               
Cow position:
               
chr10:3998740-3999019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
65, 115
               

               
Conread position:
               
534-813
               

               
Cow position:
               
chr10:32583748-32584028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 31
               

               
Conread position:
               
534-816
               

               
Cow position:
               
chr10:24732150-24732420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
262, 65
               

               
Conread position:
               
534-825
               

               
Cow position:
               
chr10:67288132-67288414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
68, 38
               

               
Conread position:
               
534-854
               

               
Cow position:
               
chr10:32503284-32503585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
23, 101
               

               
Conread position:
               
534-859
               

               
Cow position:
               
chr10:21657260-21657571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 178
               

               
Conread position:
               
534-859
               

               
Cow position:
               
chr10:45476378-45476060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
24, 114
               

               
Conread position:
               
534-860
               

               
Cow position:
               
chr10:35791769-35792088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 65
               

               
Conread position:
               
534-860
               

               
Cow position:
               
chr10:43487547-43487876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
33, 120
               

               
Conread position:
               
534-861
               

               
Cow position:
               
chr10:33665675-33666003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 121
               

               
Conread position:
               
534-861
               

               
Cow position:
               
chr10:57461191-57461514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
65, 117
               

               
Conread position:
               
534-861
               

               
Cow position:
               
chr10:57786176-57786497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 76
               

               
Conread position:
               
534-862
               

               
Cow position:
               
chr10:4184028-4184365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
534-862
               

               
Cow position:
               
chr10:9656704-9656363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
23, 246
               

               
Conread position:
               
534-862
               

               
Cow position:
               
chr10:17073522-17073205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
219, 65
               

               
Conread position:
               
534-862
               

               
Cow position:
               
chr10:23576379-23576702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
28, 207
               

               
Conread position:
               
534-862
               

               
Cow position:
               
chr10:24561148-24560827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
65, 29
               

               
Conread position:
               
534-862
               

               
Cow position:
               
chr10:37415625-37415944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 19
               

               
Conread position:
               
534-862
               

               
Cow position:
               
chr10:42312743-42313069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 42
               

               
Conread position:
               
534-862
               

               
Cow position:
               
chr10:52695892-52695565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 251
               

               
Conread position:
               
534-862
               

               
Cow position:
               
chr10:59010304-59009977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 81
               

               
Conread position:
               
534-864
               

               
Cow position:
               
chr10:8404051-8404370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 76
               

               
Conread position:
               
535-674
               

               
Cow position:
               
chr10:20446932-20447072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
64, 122
               

               
Conread position:
               
535-750
               

               
Cow position:
               
chr10:58259678-58259473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
156, 65
               

               
Conread position:
               
535-750
               

               
Cow position:
               
chr10:59164257-59164051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 114
               

               
Conread position:
               
535-761
               

               
Cow position:
               
chr10:2449190-2449413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
32, 59
               

               
Conread position:
               
535-791
               

               
Cow position:
               
chr10:51862236-51861986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
535-794
               

               
Cow position:
               
chr10:55622008-55621761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
535-796
               

               
Cow position:
               
chr10:12314994-12315241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
64, 116
               

               
Conread position:
               
535-803
               

               
Cow position:
               
chr10:6530034-6530289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
64, 104
               

               
Conread position:
               
535-843
               

               
Cow position:
               
chr10:6665704-6665423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
114, 64
               

               
Conread position:
               
535-845
               

               
Cow position:
               
chr10:37512407-37512092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
23, 65
               

               
Conread position:
               
535-845
               

               
Cow position:
               
chr10:52278568-52278869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
64, 86
               

               
Conread position:
               
535-854
               

               
Cow position:
               
chr10:7816945-7817274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
250, 62
               

               
Conread position:
               
535-860
               

               
Cow position:
               
chr10:10148492-10148810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 105
               

               
Conread position:
               
535-861
               

               
Cow position:
               
chr10:50559090-50558769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 137
               

               
Conread position:
               
535-862
               

               
Cow position:
               
chr10:25699490-25699823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
250, 64
               

               
Conread position:
               
535-862
               

               
Cow position:
               
chr10:50110069-50109736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
23, 240
               

               
Conread position:
               
535-862
               

               
Cow position:
               
chr10:51944196-51944520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 184
               

               
Conread position:
               
535-862
               

               
Cow position:
               
chr10:56732874-56733190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 58
               

               
Conread position:
               
535-862
               

               
Cow position:
               
chr10:57142374-57142042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
243, 63
               

               
Conread position:
               
535-864
               

               
Cow position:
               
chr10:23506649-23506325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
64, 27
               

               
Conread position:
               
536-862
               

               
Cow position:
               
chr10:11967003-11966682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
235, 53
               

               
Conread position:
               
536-862
               

               
Cow position:
               
chr10:19191615-19191915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
536-862
               

               
Cow position:
               
chr10:38944095-38944421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 111
               

               
Conread position:
               
536-864
               

               
Cow position:
               
chr10:28840794-28841116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
63, 23
               

               
Conread position:
               
537-761
               

               
Cow position:
               
chr10:5264659-5264873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
67, 97
               

               
Conread position:
               
539-803
               

               
Cow position:
               
chr10:6543564-6543827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
60, 248
               

               
Conread position:
               
539-809
               

               
Cow position:
               
chr10:28776192-28776459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
60, 128
               

               
Conread position:
               
539-845
               

               
Cow position:
               
chr10:17022722-17022421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 111
               

               
Conread position:
               
539-858
               

               
Cow position:
               
chr10:1488681-1488986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
60, 85
               

               
Conread position:
               
539-861
               

               
Cow position:
               
chr10:5151192-5151513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
114, 46
               

               
Conread position:
               
539-862
               

               
Cow position:
               
chr10:40164092-40163772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 50
               

               
Conread position:
               
540-817
               

               
Cow position:
               
chr10:66211452-66211172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
25, 88
               

               
Conread position:
               
540-864
               

               
Cow position:
               
chr10:9675615-9675309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
59, 69
               

               
Conread position:
               
540-864
               

               
Cow position:
               
chr10:27716999-27716673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
44, 113
               

               
Conread position:
               
541-862
               

               
Cow position:
               
chr10:6384379-6384687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
58, 68
               

               
Conread position:
               
541-862
               

               
Cow position:
               
chr10:14947105-14947415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 74
               

               
Conread position:
               
541-862
               

               
Cow position:
               
chr10:16093059-16093372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
58, 39
               

               
Conread position:
               
541-862
               

               
Cow position:
               
chr10:30369967-30369665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
85, 56
               

               
Conread position:
               
542-862
               

               
Cow position:
               
chr10:5600148-5599837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
184, 47
               

               
Conread position:
               
543-685
               

               
Cow position:
               
chr10:24971767-24971624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
543-806
               

               
Cow position:
               
chr10:24022432-24022178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
543-862
               

               
Cow position:
               
chr10:47690235-47690559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
59, 52
               

               
Conread position:
               
543-864
               

               
Cow position:
               
chr10:11255921-11256233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 98
               

               
Conread position:
               
546-847
               

               
Cow position:
               
chr10:42123746-42123442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
21, 102
               

               
Conread position:
               
546-862
               

               
Cow position:
               
chr10:21923672-21923355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
12, 102
               

               
Conread position:
               
547-794
               

               
Cow position:
               
chr10:22633775-22633532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
63, 48
               

               
Conread position:
               
547-864
               

               
Cow position:
               
chr10:61922289-61921979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
52, 35
               

               
Conread position:
               
548-862
               

               
Cow position:
               
chr10:38430714-38430405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 73
               

               
Conread position:
               
549-708
               

               
Cow position:
               
chr10:25260105-25260265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
50, 72
               

               
Conread position:
               
555-807
               

               
Cow position:
               
chr10:69997945-69997692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
43, 111
               

               
Conread position:
               
556-837
               

               
Cow position:
               
chr10:10750394-10750109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
556-862
               

               
Cow position:
               
chr10:58451513-58451219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
46, 96
               

               
Conread position:
               
557-862
               

               
Cow position:
               
chr10:60446592-60446892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
42, 88
               

               
Conread position:
               
558-781
               

               
Cow position:
               
chr10:48573816-48573597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
94, 16
               

               
Conread position:
               
563-862
               

               
Cow position:
               
chr10:55577184-55577489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
130, 39
               

               
Conread position:
               
565-782
               

               
Cow position:
               
chr10:45624282-45624073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
34, 81
               

               
Conread position:
               
565-862
               

               
Cow position:
               
chr10:3364309-3364023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
121, 34
               

               
Conread position:
               
565-862
               

               
Cow position:
               
chr10:37068545-37068259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
81, 34
               

               
Conread position:
               
565-862
               

               
Cow position:
               
chr10:39123997-39124297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
565-862
               

               
Cow position:
               
chr10:46327556-46327852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 86
               

               
Conread position:
               
566-854
               

               
Cow position:
               
chr10:8449367-8449670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
566-860
               

               
Cow position:
               
chr10:61982255-61982550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 67
               

               
Conread position:
               
566-861
               

               
Cow position:
               
chr10:15309528-15309248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
159, 33
               

               
Conread position:
               
566-862
               

               
Cow position:
               
chr10:6663895-6664192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
33, 216
               

               
Conread position:
               
567-862
               

               
Cow position:
               
chr10:52881750-52881455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
32, 83
               

               
Conread position:
               
568-845
               

               
Cow position:
               
chr10:21422289-21422017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
31, 150
               

               
Conread position:
               
568-862
               

               
Cow position:
               
chr10:31005148-31004853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
31, 50
               

               
Conread position:
               
569-862
               

               
Cow position:
               
chr10:7383739-7383455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
30, 71
               

               
Conread position:
               
570-862
               

               
Cow position:
               
chr10:36400171-36399886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
182, 29
               

               
Conread position:
               
570-862
               

               
Cow position:
               
chr10:36531859-36531563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
32, 75
               

               
Conread position:
               
576-864
               

               
Cow position:
               
chr10:29328508-29328234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
23, 18
               

               
Conread position:
               
577-859
               

               
Cow position:
               
chr10:48679383-48679106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
194, 22
               

               
Conread position:
               
577-862
               

               
Cow position:
               
chr10:15868129-15868417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 74
               

               
Conread position:
               
583-796
               

               
Cow position:
               
chr10:6198909-6199118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
189, 16
               

               
Conread position:
               
583-862
               

               
Cow position:
               
chr10:19098723-19098991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
16, 176
               

               
Conread position:
               
583-862
               

               
Cow position:
               
chr10:61510055-61509785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 72
               

               
Conread position:
               
585-809
               

               
Cow position:
               
chr10:49947990-49947773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
587-848
               

               
Cow position:
               
chr10:22888926-22888667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
12, 148
               

               
Conread position:
               
590-845
               

               
Cow position:
               
chr10:48407030-48407281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
59, 9
               

               
Conread position:
               
590-854
               

               
Cow position:
               
chr10:30216815-30216563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
9, 74
               

               
Conread position:
               
591-862
               

               
Cow position:
               
chr10:55396084-55395817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
8, 35
               

               
Conread position:
               
596-864
               

               
Cow position:
               
chr10:24447762-24448023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
146, 53
               

               
Conread position:
               
598-809
               

               
Cow position:
               
chr10:23583668-23583462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
601-800
               

               
Cow position:
               
chr10:54819170-54819365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 113
               

               
Conread position:
               
604-782
               

               
Cow position:
               
chr10:29380053-29379873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 110
               

               
Conread position:
               
604-844
               

               
Cow position:
               
chr10:34646541-34646307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
52, 41
               

               
Conread position:
               
604-862
               

               
Cow position:
               
chr10:23346396-23346145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
40, 48
               

               
Conread position:
               
605-807
               

               
Cow position:
               
chr10:53405384-53405579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 40
               

               
Conread position:
               
609-796
               

               
Cow position:
               
chr10:52827677-52827502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
609-862
               

               
Cow position:
               
chr10:23390404-23390158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
169, 0
               

               
Conread position:
               
609-862
               

               
Cow position:
               
chr10:58044218-58043965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
97, 23
               

               
Conread position:
               
610-788
               

               
Cow position:
               
chr10:37768215-37768392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
34, 169
               

               
Conread position:
               
614-761
               

               
Cow position:
               
chr10:6252581-6252434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
614-862
               

               
Cow position:
               
chr10:41676495-41676253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
79, 25
               

               
Conread position:
               
615-848
               

               
Cow position:
               
chr10:31803564-31803334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 37
               

               
Conread position:
               
616-862
               

               
Cow position:
               
chr10:43586368-43586122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
33, 161
               

               
Conread position:
               
617-862
               

               
Cow position:
               
chr10:2535487-2535724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 141
               

               
Conread position:
               
636-862
               

               
Cow position:
               
chr10:30929952-30929723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
22, 161
               

               
Conread position:
               
637-862
               

               
Cow position:
               
chr10:55600217-55599992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
153, 12
               

               
Conread position:
               
639-862
               

               
Cow position:
               
chr10:39622413-39622202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
645-862
               

               
Cow position:
               
chr10:11047258-11047043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
36, 21
               

               
Conread position:
               
648-862
               

               
Cow position:
               
chr10:17149829-17150034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
651-838
               

               
Cow position:
               
chr10:46886109-46886288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
651-858
               

               
Cow position:
               
chr10:23311075-23310868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
132, 59
               

               
Conread position:
               
651-861
               

               
Cow position:
               
chr10:60697671-60697468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
651-862
               

               
Cow position:
               
chr10:37426181-37425976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
652-862
               

               
Cow position:
               
chr10:34673971-34674176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
652-862
               

               
Cow position:
               
chr10:49634020-49634227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
652-862
               

               
Cow position:
               
chr10:49923420-49923204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
653-862
               

               
Cow position:
               
chr10:2857002-2857209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
201, 85
               

               
Conread position:
               
658-861
               

               
Cow position:
               
chr10:443542-443733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
660-862
               

               
Cow position:
               
chr10:5784293-5784090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
151, 95
               

               
Conread position:
               
661-862
               

               
Cow position:
               
chr10:22981016-22980818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
91, 96
               

               
Conread position:
               
661-862
               

               
Cow position:
               
chr10:32080237-32080429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
662-862
               

               
Cow position:
               
chr10:10027538-10027736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
129, 47
               

               
Conread position:
               
662-862
               

               
Cow position:
               
chr10:16830423-16830222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
112, 91
               

               
Conread position:
               
662-864
               

               
Cow position:
               
chr10:47182605-47182402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
99, 91
               

               
Conread position:
               
663-862
               

               
Cow position:
               
chr10:38205746-38205555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
664-861
               

               
Cow position:
               
chr10:11112589-11112784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
79, 38
               

               
Conread position:
               
668-862
               

               
Cow position:
               
chr10:27178465-27178648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
677-862
               

               
Cow position:
               
chr10:10829021-10829203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
680-854
               

               
Cow position:
               
chr10:24971345-24971177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
680-859
               

               
Cow position:
               
chr10:46799123-46799296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 82
               

               
Conread position:
               
680-861
               

               
Cow position:
               
chr10:59417254-59417077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
680-862
               

               
Cow position:
               
chr10:53564139-53563956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
680-864
               

               
Cow position:
               
chr10:49862451-49862627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
682-862
               

               
Cow position:
               
chr10:19679081-19679267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
682-862
               

               
Cow position:
               
chr10:40998839-40999019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
25, 104
               

               
Conread position:
               
685-864
               

               
Cow position:
               
chr10:14188624-14188447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
175, 74
               

               
Conread position:
               
697-860
               

               
Cow position:
               
chr10:25475532-25475692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
704-862
               

               
Cow position:
               
chr10:16641926-16641768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 84
               

               
Conread position:
               
715-861
               

               
Cow position:
               
chr10:4329981-4329832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 44
               

               
Conread position:
               
715-862
               

               
Cow position:
               
chr10:14668414-14668560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
715-862
               

               
Cow position:
               
chr10:47429842-47429985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
489-861
               

               
Cow position:
               
chr11:52381075-52380703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 28
               

               
Conread position:
               
515-862
               

               
Cow position:
               
chr11:55494503-55494834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
9, 20
               

               
Conread position:
               
526-864
               

               
Cow position:
               
chr11:18851755-18852075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 12
               

               
Conread position:
               
527-787
               

               
Cow position:
               
chr11:53553073-53553310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
527-803
               

               
Cow position:
               
chr11:59872767-59873040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
72, 119
               

               
Conread position:
               
527-816
               

               
Cow position:
               
chr11:26845747-26845473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
7, 38
               

               
Conread position:
               
527-852
               

               
Cow position:
               
chr11:81162596-81162287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
77, 7
               

               
Conread position:
               
527-862
               

               
Cow position:
               
chr11:67600616-67600948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
12, 232
               

               
Conread position:
               
527-862
               

               
Cow position:
               
chr11:77319246-77319582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 83
               

               
Conread position:
               
530-742
               

               
Cow position:
               
chr11:30596825-30597043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
530-837
               

               
Cow position:
               
chr11:4663207-4662909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
69, 118
               

               
Conread position:
               
530-862
               

               
Cow position:
               
chr11:43360949-43360617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 172
               

               
Conread position:
               
530-862
               

               
Cow position:
               
chr11:48932746-48932419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 119
               

               
Conread position:
               
531-748
               

               
Cow position:
               
chr11:34032363-34032147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 121
               

               
Conread position:
               
531-815
               

               
Cow position:
               
chr11:76114494-76114763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
68, 78
               

               
Conread position:
               
531-830
               

               
Cow position:
               
chr11:81281787-81282091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 223
               

               
Conread position:
               
531-859
               

               
Cow position:
               
chr11:83066334-83066659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
68, 120
               

               
Conread position:
               
531-862
               

               
Cow position:
               
chr11:8525271-8524948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
68, 115
               

               
Conread position:
               
531-862
               

               
Cow position:
               
chr11:17083458-17083143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
107, 46
               

               
Conread position:
               
533-660
               

               
Cow position:
               
chr11:25165284-25165412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
533-674
               

               
Cow position:
               
chr11:47850868-47851008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
66, 116
               

               
Conread position:
               
533-694
               

               
Cow position:
               
chr11:8936643-8936488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
112, 64
               

               
Conread position:
               
533-719
               

               
Cow position:
               
chr11:955207-955394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
533-722
               

               
Cow position:
               
chr11:42793131-42792943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
66, 118
               

               
Conread position:
               
533-724
               

               
Cow position:
               
chr11:6154256-6154440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
533-730
               

               
Cow position:
               
chr11:65430902-65431092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
66, 11
               

               
Conread position:
               
533-744
               

               
Cow position:
               
chr11:65409313-65409102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
66, 89
               

               
Conread position:
               
533-745
               

               
Cow position:
               
chr11:45898211-45897997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
66, 100
               

               
Conread position:
               
533-746
               

               
Cow position:
               
chr11:3833510-3833309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
533-746
               

               
Cow position:
               
chr11:18591590-18591379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
66, 100
               

               
Conread position:
               
533-748
               

               
Cow position:
               
chr11:1849320-1849115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
533-750
               

               
Cow position:
               
chr11:38874562-38874344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
34, 118
               

               
Conread position:
               
533-750
               

               
Cow position:
               
chr11:58588189-58588402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
533-754
               

               
Cow position:
               
chr11:42358961-42359176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
533-761
               

               
Cow position:
               
chr11:10620481-10620259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
169, 16
               

               
Conread position:
               
533-761
               

               
Cow position:
               
chr11:67550531-67550309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
533-762
               

               
Cow position:
               
chr11:24937506-24937735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
66, 29
               

               
Conread position:
               
533-774
               

               
Cow position:
               
chr11:11232613-11232374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
66, 114
               

               
Conread position:
               
533-774
               

               
Cow position:
               
chr11:50778215-50778449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
66, 101
               

               
Conread position:
               
533-782
               

               
Cow position:
               
chr11:63469721-63469965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
533-788
               

               
Cow position:
               
chr11:42044146-42043902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
533-789
               

               
Cow position:
               
chr11:35775180-35775434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 34
               

               
Conread position:
               
533-793
               

               
Cow position:
               
chr11:23138220-23137955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 174
               

               
Conread position:
               
533-794
               

               
Cow position:
               
chr11:44036560-44036821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 71
               

               
Conread position:
               
533-796
               

               
Cow position:
               
chr11:16342398-16342125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
58, 33
               

               
Conread position:
               
533-797
               

               
Cow position:
               
chr11:17660936-17661186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
66, 76
               

               
Conread position:
               
533-798
               

               
Cow position:
               
chr11:10213720-10213463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
533-801
               

               
Cow position:
               
chr11:44636916-44636648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
66, 119
               

               
Conread position:
               
533-803
               

               
Cow position:
               
chr11:83230549-83230288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
105, 60
               

               
Conread position:
               
533-804
               

               
Cow position:
               
chr11:23586479-23586750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
66, 76
               

               
Conread position:
               
533-805
               

               
Cow position:
               
chr11:36238625-36238888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
66, 120
               

               
Conread position:
               
533-807
               

               
Cow position:
               
chr11:7590035-7590303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
66, 115
               

               
Conread position:
               
533-807
               

               
Cow position:
               
chr11:69119144-69119407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
533-807
               

               
Cow position:
               
chr11:77128501-77128775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
70, 29
               

               
Conread position:
               
533-808
               

               
Cow position:
               
chr11:30954840-30955116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
34, 120
               

               
Conread position:
               
533-808
               

               
Cow position:
               
chr11:33341304-33341030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
66, 23
               

               
Conread position:
               
533-808
               

               
Cow position:
               
chr11:48272039-48272316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
533-808
               

               
Cow position:
               
chr11:56518468-56518197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 158
               

               
Conread position:
               
533-808
               

               
Cow position:
               
chr11:73924718-73924447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
66, 51
               

               
Conread position:
               
533-809
               

               
Cow position:
               
chr11:2092181-2092454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
113, 59
               

               
Conread position:
               
533-809
               

               
Cow position:
               
chr11:16907201-16906934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
66, 33
               

               
Conread position:
               
533-812
               

               
Cow position:
               
chr11:67747126-67747399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
69, 106
               

               
Conread position:
               
533-823
               

               
Cow position:
               
chr11:377804-377512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
32, 256
               

               
Conread position:
               
533-827
               

               
Cow position:
               
chr11:8428338-8428644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
23, 144
               

               
Conread position:
               
533-828
               

               
Cow position:
               
chr11:44234195-44234488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
66, 42
               

               
Conread position:
               
533-830
               

               
Cow position:
               
chr11:34113107-34113400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
66, 30
               

               
Conread position:
               
533-839
               

               
Cow position:
               
chr11:3393367-3393067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
101, 11
               

               
Conread position:
               
533-839
               

               
Cow position:
               
chr11:30192014-30192328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
42, 121
               

               
Conread position:
               
533-839
               

               
Cow position:
               
chr11:45646753-45646446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 190
               

               
Conread position:
               
533-843
               

               
Cow position:
               
chr11:68206997-68206695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
193, 66
               

               
Conread position:
               
533-844
               

               
Cow position:
               
chr11:26144257-26143942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 87
               

               
Conread position:
               
533-845
               

               
Cow position:
               
chr11:2907677-2907378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
66, 108
               

               
Conread position:
               
533-845
               

               
Cow position:
               
chr11:19592153-19591840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
23, 119
               

               
Conread position:
               
533-845
               

               
Cow position:
               
chr11:64334699-64334986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
533-845
               

               
Cow position:
               
chr11:80923482-80923170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 182
               

               
Conread position:
               
533-848
               

               
Cow position:
               
chr11:11558009-11558327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 258
               

               
Conread position:
               
533-852
               

               
Cow position:
               
chr11:20684735-20684410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
32, 123
               

               
Conread position:
               
533-852
               

               
Cow position:
               
chr11:70382851-70382529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
34, 61
               

               
Conread position:
               
533-853
               

               
Cow position:
               
chr11:8545171-8544855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
533-857
               

               
Cow position:
               
chr11:3780580-3780250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 45
               

               
Conread position:
               
533-858
               

               
Cow position:
               
chr11:35580099-35580427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
533-858
               

               
Cow position:
               
chr11:71390722-71390408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
66, 208
               

               
Conread position:
               
533-860
               

               
Cow position:
               
chr11:27248334-27248656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 113
               

               
Conread position:
               
533-860
               

               
Cow position:
               
chr11:27746766-27747086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
66, 118
               

               
Conread position:
               
533-860
               

               
Cow position:
               
chr11:37804713-37804384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
34, 66
               

               
Conread position:
               
533-860
               

               
Cow position:
               
chr11:83043522-83043199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 107
               

               
Conread position:
               
533-861
               

               
Cow position:
               
chr11:15772878-15772544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
26, 149
               

               
Conread position:
               
533-861
               

               
Cow position:
               
chr11:65157570-65157236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
47, 137
               

               
Conread position:
               
533-861
               

               
Cow position:
               
chr11:66041113-66041441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
25, 227
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:11646911-11647267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
69, 138
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:13043304-13042978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
24, 71
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:13061388-13061084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:15016883-15017228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:15632715-15632390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
69, 214
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:17889885-17889557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
32, 86
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:18698719-18699040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
66, 252
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:19500938-19500634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:20238513-20238846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:27405224-27404901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
240, 59
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:30830774-30830453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 255
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:34646433-34646765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:35153983-35153650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
65, 99
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:36940759-36940424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
31, 70
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:40818798-40818462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
32, 124
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:47899121-47899420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
66, 105
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:48474544-48474879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
34, 113
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:50152974-50152643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:52297379-52297053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 130
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:53778456-53778790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
35, 113
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:55052728-55053033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:62239588-62239911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:62620225-62620546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
272, 63
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:65607849-65607521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
66, 118
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:68912976-68913313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 124
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:70484017-70483681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
66, 136
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:75874910-75874602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 77
               

               
Conread position:
               
533-862
               

               
Cow position:
               
chr11:85723541-85723864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
28, 103
               

               
Conread position:
               
533-863
               

               
Cow position:
               
chr11:2576062-2575737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
69, 91
               

               
Conread position:
               
533-864
               

               
Cow position:
               
chr11:21844291-21843967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
66, 85
               

               
Conread position:
               
533-864
               

               
Cow position:
               
chr11:24601815-24602130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
66, 91
               

               
Conread position:
               
533-864
               

               
Cow position:
               
chr11:26535620-26535956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
66, 30
               

               
Conread position:
               
533-864
               

               
Cow position:
               
chr11:29960147-29960464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
66, 29
               

               
Conread position:
               
533-864
               

               
Cow position:
               
chr11:45631920-45631608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
63, 156
               

               
Conread position:
               
533-864
               

               
Cow position:
               
chr11:55333753-55334091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
66, 99
               

               
Conread position:
               
534-711
               

               
Cow position:
               
chr11:16251404-16251225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
534-782
               

               
Cow position:
               
chr11:80820156-80819915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
65, 76
               

               
Conread position:
               
534-790
               

               
Cow position:
               
chr11:56654391-56654654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
23, 34
               

               
Conread position:
               
534-794
               

               
Cow position:
               
chr11:39115336-39115597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
65, 180
               

               
Conread position:
               
534-798
               

               
Cow position:
               
chr11:43897983-43898242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
62, 45
               

               
Conread position:
               
534-799
               

               
Cow position:
               
chr11:23128700-23128435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
65, 222
               

               
Conread position:
               
534-801
               

               
Cow position:
               
chr11:48496744-48496480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
151, 11
               

               
Conread position:
               
534-804
               

               
Cow position:
               
chr11:62151042-62150784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
534-814
               

               
Cow position:
               
chr11:47544973-47545256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
65, 178
               

               
Conread position:
               
534-829
               

               
Cow position:
               
chr11:46580198-46580494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 210
               

               
Conread position:
               
534-852
               

               
Cow position:
               
chr11:39499201-39499515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 49
               

               
Conread position:
               
534-859
               

               
Cow position:
               
chr11:48544279-48544603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
58, 66
               

               
Conread position:
               
534-860
               

               
Cow position:
               
chr11:7873990-7874308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
24, 44
               

               
Conread position:
               
534-861
               

               
Cow position:
               
chr11:17227803-17227482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
65, 71
               

               
Conread position:
               
534-861
               

               
Cow position:
               
chr11:32198780-32199112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 9
               

               
Conread position:
               
534-861
               

               
Cow position:
               
chr11:40395282-40395605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
24, 17
               

               
Conread position:
               
534-862
               

               
Cow position:
               
chr11:41026-41340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
101, 50
               

               
Conread position:
               
534-862
               

               
Cow position:
               
chr11:17860312-17859983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
33, 116
               

               
Conread position:
               
534-862
               

               
Cow position:
               
chr11:20761689-20762022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
65, 106
               

               
Conread position:
               
534-862
               

               
Cow position:
               
chr11:28993889-28993578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
65, 114
               

               
Conread position:
               
534-862
               

               
Cow position:
               
chr11:30639103-30638782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
33, 96
               

               
Conread position:
               
534-862
               

               
Cow position:
               
chr11:36182529-36182861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
65, 109
               

               
Conread position:
               
534-862
               

               
Cow position:
               
chr11:45434929-45435245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
156, 65
               

               
Conread position:
               
534-862
               

               
Cow position:
               
chr11:45872477-45872140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
31, 144
               

               
Conread position:
               
534-862
               

               
Cow position:
               
chr11:51729131-51729444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
534-862
               

               
Cow position:
               
chr11:63434213-63433896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
65, 103
               

               
Conread position:
               
534-863
               

               
Cow position:
               
chr11:46748021-46747688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
65, 84
               

               
Conread position:
               
534-864
               

               
Cow position:
               
chr11:47639188-47638852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
535-692
               

               
Cow position:
               
chr11:59156035-59155877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
64, 86
               

               
Conread position:
               
535-702
               

               
Cow position:
               
chr11:4412171-4412012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
64, 80
               

               
Conread position:
               
535-804
               

               
Cow position:
               
chr11:952115-952376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 40
               

               
Conread position:
               
535-808
               

               
Cow position:
               
chr11:25386907-25387183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
64, 255
               

               
Conread position:
               
535-848
               

               
Cow position:
               
chr11:259329-259020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
64, 116
               

               
Conread position:
               
535-848
               

               
Cow position:
               
chr11:59902734-59903048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
28, 114
               

               
Conread position:
               
535-854
               

               
Cow position:
               
chr11:64077661-64077340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
23, 112
               

               
Conread position:
               
535-860
               

               
Cow position:
               
chr11:13592580-13592907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
26, 32
               

               
Conread position:
               
535-860
               

               
Cow position:
               
chr11:21728425-21728121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
162, 64
               

               
Conread position:
               
535-860
               

               
Cow position:
               
chr11:49152795-49153108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
23, 50
               

               
Conread position:
               
535-861
               

               
Cow position:
               
chr11:35347911-35347582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
23, 113
               

               
Conread position:
               
535-861
               

               
Cow position:
               
chr11:65762756-65762415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
535-862
               

               
Cow position:
               
chr11:1625374-1625052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 58
               

               
Conread position:
               
535-862
               

               
Cow position:
               
chr11:2917742-2917423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
64, 98
               

               
Conread position:
               
535-862
               

               
Cow position:
               
chr11:2925444-2925138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
535-862
               

               
Cow position:
               
chr11:25620553-25620220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
28, 61
               

               
Conread position:
               
535-862
               

               
Cow position:
               
chr11:30708342-30708675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 219
               

               
Conread position:
               
535-862
               

               
Cow position:
               
chr11:42296774-42296457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
67, 101
               

               
Conread position:
               
535-862
               

               
Cow position:
               
chr11:44222734-44223051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
118, 57
               

               
Conread position:
               
535-862
               

               
Cow position:
               
chr11:55761723-55762027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
68, 26
               

               
Conread position:
               
535-862
               

               
Cow position:
               
chr11:64044085-64044387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
64, 104
               

               
Conread position:
               
535-864
               

               
Cow position:
               
chr11:48295876-48296197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 63
               

               
Conread position:
               
536-691
               

               
Cow position:
               
chr11:70741131-70740978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
63, 96
               

               
Conread position:
               
536-843
               

               
Cow position:
               
chr11:56187464-56187758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
536-845
               

               
Cow position:
               
chr11:34121045-34121351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 63
               

               
Conread position:
               
536-860
               

               
Cow position:
               
chr11:5201805-5201478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
39, 106
               

               
Conread position:
               
536-860
               

               
Cow position:
               
chr11:80556065-80556386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 127
               

               
Conread position:
               
536-861
               

               
Cow position:
               
chr11:63435362-63435691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
63, 128
               

               
Conread position:
               
536-862
               

               
Cow position:
               
chr11:4207157-4207481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
237, 111
               

               
Conread position:
               
536-862
               

               
Cow position:
               
chr11:23272155-23271836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
216, 56
               

               
Conread position:
               
536-862
               

               
Cow position:
               
chr11:35213316-35213001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
50, 24
               

               
Conread position:
               
537-808
               

               
Cow position:
               
chr11:44575887-44575639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
537-853
               

               
Cow position:
               
chr11:62663375-62663081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
62, 85
               

               
Conread position:
               
538-808
               

               
Cow position:
               
chr11:69075755-69076024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
61, 161
               

               
Conread position:
               
539-808
               

               
Cow position:
               
chr11:59702334-59702605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
110, 58
               

               
Conread position:
               
539-845
               

               
Cow position:
               
chr11:11125510-11125821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
60, 111
               

               
Conread position:
               
539-852
               

               
Cow position:
               
chr11:2788226-2788555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
6, 237
               

               
Conread position:
               
539-860
               

               
Cow position:
               
chr11:32254371-32254048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
18, 44
               

               
Conread position:
               
539-862
               

               
Cow position:
               
chr11:2874236-2874572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 114
               

               
Conread position:
               
539-862
               

               
Cow position:
               
chr11:6400223-6399894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 111
               

               
Conread position:
               
539-862
               

               
Cow position:
               
chr11:42291985-42291670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
67, 85
               

               
Conread position:
               
540-808
               

               
Cow position:
               
chr11:35684646-35684384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
62, 110
               

               
Conread position:
               
540-847
               

               
Cow position:
               
chr11:17493327-17493638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
59, 69
               

               
Conread position:
               
540-852
               

               
Cow position:
               
chr11:57724977-57724663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
23, 96
               

               
Conread position:
               
540-862
               

               
Cow position:
               
chr11:42884929-42884615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 63
               

               
Conread position:
               
540-862
               

               
Cow position:
               
chr11:44031851-44032176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
107, 252
               

               
Conread position:
               
540-862
               

               
Cow position:
               
chr11:70250774-70251084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
178, 37
               

               
Conread position:
               
540-863
               

               
Cow position:
               
chr11:41986196-41985877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
541-856
               

               
Cow position:
               
chr11:33349849-33349537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 99
               

               
Conread position:
               
541-860
               

               
Cow position:
               
chr11:30165359-30165679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 122
               

               
Conread position:
               
541-862
               

               
Cow position:
               
chr11:74316562-74316876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
58, 95
               
542-749UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr11:81611620-81611825 (view  custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 58
               
542-774UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr11:49934887-49934649 (view  custom track)

               
               
               
Alignm length:
239

               
               
               
Alignm identity:
156

               
               
               
Alignm E-value:
7e-21

               
               
               
Alignm gaps (pig, cow):
17, 0
542-790UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr11:86720561-86720322 (view  custom track)

               
               
               
Alignm length:
250

               
               
               
Alignm identity:
167

               
               
               
Alignm E-value:
9e-23

               
               
               
Alignm gaps (pig, cow):
57, 47

               
               
               Conread position:542-809
               
               
               Cow position:chr11:28643935-28644202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):57, 244

               
               
               Conread position:542-862
               
               
               Cow position:chr11:32055334-32055015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 121

               
               
               Conread position:542-862
               
               
               Cow position:chr11:32126461-32126786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 63

               
               
               Conread position:543-862
               
               
               Cow position:chr11:53773528-53773853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):28, 222

               
               
               Conread position:543-862
               
               
               Cow position:chr11:68112411-68112089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 26

               
               
               Conread position:544-808
               
               
               Cow position:chr11:54334184-54334442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):23, 103

               
               
               Conread position:544-845
               
               
               Cow position:chr11:11469782-11469500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):215, 9

               
               
               Conread position:545-860
               
               
               Cow position:chr11:23407315-23407628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):54, 241

               
               
               Conread position:545-860
               
               
               Cow position:chr11:47755531-47755212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):15, 104

               
               
               Conread position:546-796
               
               
               Cow position:chr11:5321-5567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):213, 98

               
               
               Conread position:550-795
               
               
               Cow position:chr11:65767056-65767301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):49, 229

               
               
               Conread position:550-860
               
               
               Cow position:chr11:53462801-53463110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):8, 99

               
               
               Conread position:550-864
               
               
               Cow position:chr11:81135306-81134997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):169, 48

               
               
               Conread position:552-793
               
               
               Cow position:chr11:22499495-22499266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):209, 13

               
               
               Conread position:552-845
               
               
               Cow position:chr11:67615382-67615096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):47, 29

               
               
               Conread position:552-862
               
               
               Cow position:chr11:47772531-47772212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):50, 37

               
               
               Conread position:553-862
               
               
               Cow position:chr11:52690661-52690355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):14, 169

               
               
               Conread position:556-862
               
               
               Cow position:chr11:62788993-62789297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):43, 231

               
               
               Conread position:557-862
               
               
               Cow position:chr11:35981278-35980971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):45, 58

               
               
               Conread position:557-862
               
               
               Cow position:chr11:40608730-40608423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):42, 9

               
               
               Conread position:562-748
               
               
               Cow position:chr11:21497392-21497578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 105

               
               
               Conread position:565-808
               
               
               Cow position:chr11:41293945-41293704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 88

               
               
               Conread position:566-858
               
               
               Cow position:chr11:69977852-69978131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:566-862
               
               
               Cow position:chr11:261388-261087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):33, 72

               
               
               Conread position:566-862
               
               
               Cow position:chr11:39462504-39462789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):211, 25

               
               
               Conread position:566-862
               
               
               Cow position:chr11:49873013-49872717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):13, 152

               
               
               Conread position:566-862
               
               
               Cow position:chr11:81168157-81167861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):33, 88

               
               
               Conread position:566-862
               
               
               Cow position:chr11:83032558-83032847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):188, 31

               
               
               Conread position:567-772
               
               
               Cow position:chr11:6194081-6194285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:567-862
               
               
               Cow position:chr11:67615053-67614755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):32, 79

               
               
               Conread position:569-862
               
               
               Cow position:chr11:17036652-17036362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 216

               
               
               Conread position:569-862
               
               
               Cow position:chr11:42066738-42067034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):71, 33

               
               
               Conread position:571-862
               
               
               Cow position:chr11:26275078-26274796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):13, 82

               
               
               Conread position:577-861
               
               
               Cow position:chr11:63999204-63998921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):25, 104

               
               
               Conread position:586-845
               
               
               Cow position:chr11:30493893-30494144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):13, 54

               
               
               Conread position:589-861
               
               
               Cow position:chr11:48085815-48086087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:589-862
               
               
               Cow position:chr11:46922999-46922717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):46, 9

               
               
               Conread position:589-862
               
               
               Cow position:chr11:80413114-80412839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):10, 34

               
               
               Conread position:590-861
               
               
               Cow position:chr11:39060702-39060436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):9, 58

               
               
               Conread position:594-852
               
               
               Cow position:chr11:30370010-30370262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):8, 109

               
               
               Conread position:598-862
               
               
               Cow position:chr11:80564200-80564467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):192, 41

               
               
               Conread position:599-859
               
               
               Cow position:chr11:62813043-62812786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 23

               
               
               Conread position:601-809
               
               
               Cow position:chr11:35803044-35803251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):138, 112

               
               
               Conread position:601-837
               
               
               Cow position:chr11:19946346-19946572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:601-860
               
               
               Cow position:chr11:17676460-17676207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:603-860
               
               
               Cow position:chr11:42160148-42159894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):29, 115

               
               
               Conread position:603-862
               
               
               Cow position:chr11:8437777-8437520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):183, 36

               
               
               Conread position:604-861
               
               
               Cow position:chr11:33409347-33409097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:608-862
               
               
               Cow position:chr11:30867099-30867347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 5

               
               
               Conread position:609-750
               
               
               Cow position:chr11:54218635-54218772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:609-862
               
               
               Cow position:chr11:63866736-63866491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):158, 28

               
               
               Conread position:610-816
               
               
               Cow position:chr11:28168505-28168301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):36, 47

               
               
               Conread position:610-862
               
               
               Cow position:chr11:17721885-17721631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:611-844
               
               
               Cow position:chr11:31410963-31410728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 177

               
               
               Conread position:613-862
               
               
               Cow position:chr11:4637251-4637005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:627-860
               
               
               Cow position:chr11:25119997-25119768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):25, 12

               
               
               Conread position:628-862
               
               
               Cow position:chr11:1932556-1932318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 28

               
               
               Conread position:632-862
               
               
               Cow position:chr11:20205906-20205688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:636-801
               
               
               Cow position:chr11:36329091-36328931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:639-862
               
               
               Cow position:chr11:18447547-18447331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 148

               
               
               Conread position:651-862
               
               
               Cow position:chr11:21885792-21886000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):149, 82

               
               
               Conread position:661-858
               
               
               Cow position:chr11:62889925-62889726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:662-861
               
               
               Cow position:chr11:15382533-15382326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:662-862
               
               
               Cow position:chr11:18924715-18924917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 107

               
               
               Conread position:662-862
               
               
               Cow position:chr11:30895034-30894833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:662-864
               
               
               Cow position:chr11:3896729-3896526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):142, 36

               
               
               Conread position:666-860
               
               
               Cow position:chr11:63165673-63165483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:673-862
               
               
               Cow position:chr11:56114919-56115107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:680-862
               
               
               Cow position:chr11:30986629-30986806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:680-862
               
               
               Cow position:chr11:48315409-48315229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:715-859
               
               
               Cow position:chr11:54872737-54872594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:722-862
               
               
               Cow position:chr11:65431548-65431687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:523-845
               
               
               Cow position:chr12:20636348-20636019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:526-846
               
               
               Cow position:chr12:37770691-37770998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):73, 9

               
               
               Conread position:527-782
               
               
               Cow position:chr12:30170484-30170737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):72, 7

               
               
               Conread position:527-837
               
               
               Cow position:chr12:41159407-41159713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 51

               
               
               Conread position:527-862
               
               
               Cow position:chr12:8943404-8943067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 73

               
               
               Conread position:527-862
               
               
               Cow position:chr12:18518479-18518820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 70

               
               
               Conread position:527-862
               
               
               Cow position:chr12:42879511-42879847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 8

               
               
               Conread position:530-806
               
               
               Cow position:chr12:45820541-45820275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):238, 50

               
               
               Conread position:530-808
               
               
               Cow position:chr12:32714862-32715141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):68, 155

               
               
               Conread position:530-822
               
               
               Cow position:chr12:27037627-27037343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:530-854
               
               
               Cow position:chr12:31947936-31948252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):68, 103

               
               
               Conread position:530-860
               
               
               Cow position:chr12:42966818-42967141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):69, 33

               
               
               Conread position:530-862
               
               
               Cow position:chr12:1889762-1889432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):73, 153

               
               
               Conread position:530-862
               
               
               Cow position:chr12:11587585-11587917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):29, 90

               
               
               Conread position:530-862
               
               
               Cow position:chr12:30805672-30806000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):69, 115

               
               
               Conread position:530-862
               
               
               Cow position:chr12:33976019-33976351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 41

               
               
               Conread position:531-843
               
               
               Cow position:chr12:11056699-11057000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):68, 50

               
               
               Conread position:531-843
               
               
               Cow position:chr12:33323676-33323365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):71, 108

               
               
               Conread position:531-862
               
               
               Cow position:chr12:19502597-19502266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):228, 64

               
               
               Conread position:533-707
               
               
               Cow position:chr12:26317284-26317459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:533-711
               
               
               Cow position:chr12:8710647-8710819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 90

               
               
               Conread position:533-718
               
               
               Cow position:chr12:3579105-3579291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 117

               
               
               Conread position:533-738
               
               
               Cow position:chr12:15530879-15531083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):66, 105

               
               
               Conread position:533-746
               
               
               Cow position:chr12:13156499-13156701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 77

               
               
               Conread position:533-750
               
               
               Cow position:chr12:8869056-8868845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):66, 167

               
               
               Conread position:533-753
               
               
               Cow position:chr12:29969401-29969619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 43

               
               
               Conread position:533-784
               
               
               Cow position:chr12:19869290-19869531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:533-788
               
               
               Cow position:chr12:39465403-39465654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):119, 66

               
               
               Conread position:533-790
               
               
               Cow position:chr12:17001083-17001335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:533-790
               
               
               Cow position:chr12:31429749-31429495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):66, 160

               
               
               Conread position:533-791
               
               
               Cow position:chr12:19691413-19691156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):66, 182

               
               
               Conread position:533-796
               
               
               Cow position:chr12:6720144-6720408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 132

               
               
               Conread position:533-796
               
               
               Cow position:chr12:30605331-30605083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:533-797
               
               
               Cow position:chr12:33457966-33458230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:533-802
               
               
               Cow position:chr12:5905878-5906142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):66, 9

               
               
               Conread position:533-808
               
               
               Cow position:chr12:7000784-7000512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):28, 113

               
               
               Conread position:533-808
               
               
               Cow position:chr12:18020679-18020952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):66, 22

               
               
               Conread position:533-808
               
               
               Cow position:chr12:29770752-29770486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):66, 97

               
               
               Conread position:533-808
               
               
               Cow position:chr12:34148528-34148265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 86

               
               
               Conread position:533-837
               
               
               Cow position:chr12:30662128-30661826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):22, 98

               
               
               Conread position:533-837
               
               
               Cow position:chr12:43942298-43942595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):105, 59

               
               
               Conread position:533-840
               
               
               Cow position:chr12:42167470-42167757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:533-842
               
               
               Cow position:chr12:45965431-45965137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):91, 69

               
               
               Conread position:533-845
               
               
               Cow position:chr12:11836054-11836361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):66, 58

               
               
               Conread position:533-845
               
               
               Cow position:chr12:15429774-15429463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):226, 72

               
               
               Conread position:533-851
               
               
               Cow position:chr12:42685126-42684802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-852
               
               
               Cow position:chr12:25917442-25917138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):165, 63

               
               
               Conread position:533-859
               
               
               Cow position:chr12:7299647-7299315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 124

               
               
               Conread position:533-861
               
               
               Cow position:chr12:9482477-9482155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):162, 23

               
               
               Conread position:533-861
               
               
               Cow position:chr12:17881683-17882002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):51, 92

               
               
               Conread position:533-862
               
               
               Cow position:chr12:5635626-5635304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 90

               
               
               Conread position:533-862
               
               
               Cow position:chr12:6241134-6241472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:533-862
               
               
               Cow position:chr12:9143218-9143532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):265, 50

               
               
               Conread position:533-862
               
               
               Cow position:chr12:17031436-17031756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 122

               
               
               Conread position:533-862
               
               
               Cow position:chr12:18123507-18123814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr12:18421102-18420773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):102, 64

               
               
               Conread position:533-862
               
               
               Cow position:chr12:19508747-19508416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 229

               
               
               Conread position:533-862
               
               
               Cow position:chr12:22515915-22515590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):32, 18

               
               
               Conread position:533-862
               
               
               Cow position:chr12:23574591-23574918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):239, 22

               
               
               Conread position:533-862
               
               
               Cow position:chr12:25561193-25561514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):69, 44

               
               
               Conread position:533-862
               
               
               Cow position:chr12:27803225-27802910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):121, 60

               
               
               Conread position:533-862
               
               
               Cow position:chr12:30745537-30745864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 56

               
               
               Conread position:533-862
               
               
               Cow position:chr12:35368462-35368792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:533-862
               
               
               Cow position:chr12:36501129-36500799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 75

               
               
               Conread position:533-862
               
               
               Cow position:chr12:36544828-36544497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 36

               
               
               Conread position:533-862
               
               
               Cow position:chr12:38774419-38774097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):33, 117

               
               
               Conread position:533-862
               
               
               Cow position:chr12:39486254-39486577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):237, 60

               
               
               Conread position:533-863
               
               
               Cow position:chr12:12637367-12637036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):21, 222

               
               
               Conread position:533-863
               
               
               Cow position:chr12:33129089-33129403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:533-864
               
               
               Cow position:chr12:4768747-4769069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):28, 67

               
               
               Conread position:533-864
               
               
               Cow position:chr12:15089335-15089666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 206

               
               
               Conread position:533-864
               
               
               Cow position:chr12:18388461-18388137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):164, 66

               
               
               Conread position:533-864
               
               
               Cow position:chr12:42181316-42180978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:534-808
               
               
               Cow position:chr12:2813048-2813323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):41, 66

               
               
               Conread position:534-861
               
               
               Cow position:chr12:18577668-18577974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):212, 65

               
               
               Conread position:534-862
               
               
               Cow position:chr12:15122142-15122473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 124

               
               
               Conread position:534-862
               
               
               Cow position:chr12:20777100-20776781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):65, 22

               
               
               Conread position:534-862
               
               
               Cow position:chr12:32169362-32169694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):27, 77

               
               
               Conread position:534-862
               
               
               Cow position:chr12:40910467-40910137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):65, 90

               
               
               Conread position:534-862
               
               
               Cow position:chr12:42602415-42602089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 64

               
               
               Conread position:534-863
               
               
               Cow position:chr12:28748760-28749093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):31, 10

               
               
               Conread position:535-807
               
               
               Cow position:chr12:18766155-18765879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 25

               
               
               Conread position:535-812
               
               
               Cow position:chr12:6210334-6210060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 55

               
               
               Conread position:535-858
               
               
               Cow position:chr12:33851182-33851500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):107, 160

               
               
               Conread position:535-861
               
               
               Cow position:chr12:6410909-6410589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):194, 64

               
               
               Conread position:535-861
               
               
               Cow position:chr12:17080083-17080413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):64, 75

               
               
               Conread position:535-862
               
               
               Cow position:chr12:4719768-4720092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 84

               
               
               Conread position:535-862
               
               
               Cow position:chr12:5714451-5714766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):64, 202

               
               
               Conread position:535-862
               
               
               Cow position:chr12:6242353-6242027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):23, 111

               
               
               Conread position:536-862
               
               
               Cow position:chr12:9710387-9710057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 42

               
               
               Conread position:536-862
               
               
               Cow position:chr12:44622178-44622508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):63, 115

               
               
               Conread position:536-864
               
               
               Cow position:chr12:15703673-15703345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):101, 62

               
               
               Conread position:539-745
               
               
               Cow position:chr12:731110-730904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):60, 128

               
               
               Conread position:539-778
               
               
               Cow position:chr12:19507459-19507702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):63, 32

               
               
               Conread position:539-793
               
               
               Cow position:chr12:47803982-47804236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):63, 23

               
               
               Conread position:539-807
               
               
               Cow position:chr12:6485380-6485120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):93, 51

               
               
               Conread position:539-840
               
               
               Cow position:chr12:38053673-38053977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 57

               
               
               Conread position:539-854
               
               
               Cow position:chr12:24662945-24663260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):60, 9

               
               
               Conread position:539-862
               
               
               Cow position:chr12:30210309-30210618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):60, 87

               
               
               Conread position:539-863
               
               
               Cow position:chr12:28131411-28131742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 85

               
               
               Conread position:540-862
               
               
               Cow position:chr12:17879475-17879157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):70, 57

               
               
               Conread position:541-691
               
               
               Cow position:chr12:29411660-29411511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:541-864
               
               
               Cow position:chr12:3623523-3623841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 7

               
               
               Conread position:542-861
               
               
               Cow position:chr12:31530118-31530445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):16, 109

               
               
               Conread position:542-864
               
               
               Cow position:chr12:13643066-13643385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):15, 51

               
               
               Conread position:543-727
               
               
               Cow position:chr12:6164194-6164008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:543-793
               
               
               Cow position:chr12:28582673-28582429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 102

               
               
               Conread position:543-854
               
               
               Cow position:chr12:15415042-15414730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):59, 77

               
               
               Conread position:544-862
               
               
               Cow position:chr12:42784139-42784455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):61, 244

               
               
               Conread position:545-853
               
               
               Cow position:chr12:5632043-5631745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 48

               
               
               Conread position:546-862
               
               
               Cow position:chr12:15050784-15050477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 105

               
               
               Conread position:546-862
               
               
               Cow position:chr12:35669639-35669324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):53, 210

               
               
               Conread position:549-861
               
               
               Cow position:chr12:36790974-36790666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):56, 103

               
               
               Conread position:550-794
               
               
               Cow position:chr12:41216046-41215805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):49, 143

               
               
               Conread position:551-861
               
               
               Cow position:chr12:37170104-37169802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 71

               
               
               Conread position:554-859
               
               
               Cow position:chr12:22285277-22284976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):45, 99

               
               
               Conread position:554-862
               
               
               Cow position:chr12:24032343-24032636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:557-862
               
               
               Cow position:chr12:7902955-7902657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):138, 24

               
               
               Conread position:561-862
               
               
               Cow position:chr12:26575734-26576040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 204

               
               
               Conread position:565-807
               
               
               Cow position:chr12:46120977-46120739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):34, 83

               
               
               Conread position:565-862
               
               
               Cow position:chr12:27563524-27563231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:566-862
               
               
               Cow position:chr12:9767020-9766733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):87, 31

               
               
               Conread position:566-862
               
               
               Cow position:chr12:16670119-16670414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):40, 198

               
               
               Conread position:566-862
               
               
               Cow position:chr12:19400956-19400668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:566-862
               
               
               Cow position:chr12:26217972-26217679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 84

               
               
               Conread position:566-862
               
               
               Cow position:chr12:35771165-35770876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 83

               
               
               Conread position:568-862
               
               
               Cow position:chr12:7110056-7110356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 65

               
               
               Conread position:580-864
               
               
               Cow position:chr12:24152205-24152492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 72

               
               
               Conread position:583-861
               
               
               Cow position:chr12:10942156-10942441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:584-862
               
               
               Cow position:chr12:30590639-30590917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):15, 62

               
               
               Conread position:585-766
               
               
               Cow position:chr12:3092700-3092527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):14, 63

               
               
               Conread position:585-861
               
               
               Cow position:chr12:26777317-26777047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):58, 25

               
               
               Conread position:585-862
               
               
               Cow position:chr12:7884809-7884532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):14, 78

               
               
               Conread position:585-864
               
               
               Cow position:chr12:17269672-17269952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):14, 201

               
               
               Conread position:588-859
               
               
               Cow position:chr12:19261074-19261340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):11, 27

               
               
               Conread position:601-860
               
               
               Cow position:chr12:29358167-29357919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 64

               
               
               Conread position:601-861
               
               
               Cow position:chr12:3371654-3371401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:601-861
               
               
               Cow position:chr12:18583103-18582852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:618-862
               
               
               Cow position:chr12:21780071-21780312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):176, 30

               
               
               Conread position:621-862
               
               
               Cow position:chr12:5554426-5554189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:629-862
               
               
               Cow position:chr12:18514012-18513778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):134, 49

               
               
               Conread position:630-788
               
               
               Cow position:chr12:23644887-23644728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:633-864
               
               
               Cow position:chr12:5839738-5839511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):20, 154

               
               
               Conread position:634-862
               
               
               Cow position:chr12:17252277-17252055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:637-861
               
               
               Cow position:chr12:12232807-12233028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):97, 79

               
               
               Conread position:645-862
               
               
               Cow position:chr12:45092378-45092588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):195, 139

               
               
               Conread position:646-809
               
               
               Cow position:chr12:15260696-15260855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:646-862
               
               
               Cow position:chr12:36261622-36261842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:660-862
               
               
               Cow position:chr12:2734961-2734763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:662-862
               
               
               Cow position:chr12:33948853-33949048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:663-862
               
               
               Cow position:chr12:45039057-45039255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 94

               
               
               Conread position:666-864
               
               
               Cow position:chr12:24437682-24437482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:667-861
               
               
               Cow position:chr12:23714628-23714819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):6, 118

               
               
               Conread position:668-861
               
               
               Cow position:chr12:14986704-14986894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):91, 86

               
               
               Conread position:680-861
               
               
               Cow position:chr12:6480607-6480789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):79, 75

               
               
               Conread position:680-862
               
               
               Cow position:chr12:2964017-2964194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:680-862
               
               
               Cow position:chr12:29180640-29180822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 108

               
               
               Conread position:680-862
               
               
               Cow position:chr12:29316495-29316314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 145

               
               
               Conread position:680-862
               
               
               Cow position:chr12:29731281-29731459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:688-862
               
               
               Cow position:chr12:4512475-4512303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):73, 63

               
               
               Conread position:699-862
               
               
               Cow position:chr12:38679035-38679196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):68, 56

               
               
               Conread position:734-862
               
               
               Cow position:chr12:38165520-38165393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:520-862
               
               
               Cow position:chr13:17821127-17821458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):13, 238

               
               
               Conread position:525-862
               
               
               Cow position:chr13:27550875-27550535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):5, 60

               
               
               Conread position:527-806
               
               
               Cow position:chr13:23856344-23856067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):75, 158

               
               
               Conread position:527-808
               
               
               Cow position:chr13:7076389-7076111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):74, 68

               
               
               Conread position:527-859
               
               
               Cow position:chr13:54388887-54389215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 258

               
               
               Conread position:527-862
               
               
               Cow position:chr13:18058115-18058447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 7

               
               
               Conread position:527-862
               
               
               Cow position:chr13:19882904-19883234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:527-862
               
               
               Cow position:chr13:35659884-35659554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):68, 7

               
               
               Conread position:527-862
               
               
               Cow position:chr13:61976833-61977158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:528-862
               
               
               Cow position:chr13:18852211-18851888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 187

               
               
               Conread position:529-862
               
               
               Cow position:chr13:20217258-20217598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 267

               
               
               Conread position:530-695
               
               
               Cow position:chr13:12682416-12682581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):106, 69

               
               
               Conread position:530-808
               
               
               Cow position:chr13:15234043-15233779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):225, 69

               
               
               Conread position:530-808
               
               
               Cow position:chr13:51115899-51116171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):124, 67

               
               
               Conread position:530-823
               
               
               Cow position:chr13:38283857-38284140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):118, 63

               
               
               Conread position:530-843
               
               
               Cow position:chr13:35526082-35526380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):262, 15

               
               
               Conread position:530-843
               
               
               Cow position:chr13:53574099-53573792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):69, 122

               
               
               Conread position:530-858
               
               
               Cow position:chr13:49022745-49023062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):110, 63

               
               
               Conread position:530-862
               
               
               Cow position:chr13:15257253-15257567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):267, 30

               
               
               Conread position:530-862
               
               
               Cow position:chr13:25926921-25926588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):31, 71

               
               
               Conread position:530-862
               
               
               Cow position:chr13:34261363-34261035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):31, 115

               
               
               Conread position:530-862
               
               
               Cow position:chr13:42200747-42200420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):69, 61

               
               
               Conread position:530-862
               
               
               Cow position:chr13:44323029-44322692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):113, 69

               
               
               Conread position:530-862
               
               
               Cow position:chr13:52055470-52055793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 36

               
               
               Conread position:530-864
               
               
               Cow position:chr13:20880797-20881123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):69, 193

               
               
               Conread position:530-864
               
               
               Cow position:chr13:44626501-44626164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:531-861
               
               
               Cow position:chr13:971765-972096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 186

               
               
               Conread position:531-862
               
               
               Cow position:chr13:26698369-26698697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):42, 104

               
               
               Conread position:531-862
               
               
               Cow position:chr13:46525317-46525629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):14, 69

               
               
               Conread position:532-711
               
               
               Cow position:chr13:10098864-10099039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):65, 92

               
               
               Conread position:532-732
               
               
               Cow position:chr13:32826328-32826529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):14, 186

               
               
               Conread position:533-686
               
               
               Cow position:chr13:6389506-6389355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 109

               
               
               Conread position:533-732
               
               
               Cow position:chr13:12618988-12619187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):65, 101

               
               
               Conread position:533-745
               
               
               Cow position:chr13:890046-890254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-750
               
               
               Cow position:chr13:8524495-8524708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:533-754
               
               
               Cow position:chr13:11954984-11955211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):64, 29

               
               
               Conread position:533-754
               
               
               Cow position:chr13:17622407-17622194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):66, 80

               
               
               Conread position:533-754
               
               
               Cow position:chr13:18243989-18243768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):32, 119

               
               
               Conread position:533-754
               
               
               Cow position:chr13:23512493-23512275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):26, 114

               
               
               Conread position:533-757
               
               
               Cow position:chr13:17613472-17613243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:533-761
               
               
               Cow position:chr13:8201360-8201584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):162, 29

               
               
               Conread position:533-775
               
               
               Cow position:chr13:15528906-15529152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-776
               
               
               Cow position:chr13:17966083-17966327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):66, 118

               
               
               Conread position:533-783
               
               
               Cow position:chr13:9593634-9593383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):66, 224

               
               
               Conread position:533-788
               
               
               Cow position:chr13:37484148-37484408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):66, 76

               
               
               Conread position:533-790
               
               
               Cow position:chr13:10928868-10929118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):105, 8

               
               
               Conread position:533-790
               
               
               Cow position:chr13:13501497-13501748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:533-790
               
               
               Cow position:chr13:14771583-14771324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 225

               
               
               Conread position:533-793
               
               
               Cow position:chr13:31813997-31813742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):244, 66

               
               
               Conread position:533-794
               
               
               Cow position:chr13:43762295-43762037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 72

               
               
               Conread position:533-794
               
               
               Cow position:chr13:48037747-48037491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):66, 108

               
               
               Conread position:533-796
               
               
               Cow position:chr13:11460747-11460496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):66, 48

               
               
               Conread position:533-808
               
               
               Cow position:chr13:17439644-17439914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):66, 83

               
               
               Conread position:533-808
               
               
               Cow position:chr13:17800198-17799929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 48

               
               
               Conread position:533-808
               
               
               Cow position:chr13:20706080-20706351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):66, 128

               
               
               Conread position:533-808
               
               
               Cow position:chr13:40943370-40943095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):65, 135

               
               
               Conread position:533-808
               
               
               Cow position:chr13:51940862-51940588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):66, 254

               
               
               Conread position:533-809
               
               
               Cow position:chr13:16014941-16014664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):24, 82

               
               
               Conread position:533-810
               
               
               Cow position:chr13:11381596-11381872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):105, 66

               
               
               Conread position:533-823
               
               
               Cow position:chr13:5082776-5082490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):65, 31

               
               
               Conread position:533-828
               
               
               Cow position:chr13:56155033-56155316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-842
               
               
               Cow position:chr13:52057670-52057378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):119, 30

               
               
               Conread position:533-843
               
               
               Cow position:chr13:20666263-20666567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 10

               
               
               Conread position:533-843
               
               
               Cow position:chr13:23479152-23478847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:533-846
               
               
               Cow position:chr13:60508993-60509308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):32, 94

               
               
               Conread position:533-848
               
               
               Cow position:chr13:1363820-1363504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 102

               
               
               Conread position:533-853
               
               
               Cow position:chr13:24230338-24230018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):25, 116

               
               
               Conread position:533-853
               
               
               Cow position:chr13:34263243-34263564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 96

               
               
               Conread position:533-854
               
               
               Cow position:chr13:11260395-11260085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 66

               
               
               Conread position:533-854
               
               
               Cow position:chr13:17970902-17971235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):66, 82

               
               
               Conread position:533-854
               
               
               Cow position:chr13:20360396-20360083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):108, 59

               
               
               Conread position:533-858
               
               
               Cow position:chr13:49503406-49503734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):61, 8

               
               
               Conread position:533-858
               
               
               Cow position:chr13:55674083-55674406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 98

               
               
               Conread position:533-860
               
               
               Cow position:chr13:6974289-6973964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):32, 116

               
               
               Conread position:533-860
               
               
               Cow position:chr13:37592812-37593144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):31, 252

               
               
               Conread position:533-861
               
               
               Cow position:chr13:12875846-12876175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):33, 66

               
               
               Conread position:533-861
               
               
               Cow position:chr13:13320910-13320598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):226, 39

               
               
               Conread position:533-861
               
               
               Cow position:chr13:21275981-21275657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 57

               
               
               Conread position:533-861
               
               
               Cow position:chr13:24586167-24585849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 56

               
               
               Conread position:533-861
               
               
               Cow position:chr13:33256622-33256298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):66, 32

               
               
               Conread position:533-862
               
               
               Cow position:chr13:7059597-7059258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 111

               
               
               Conread position:533-862
               
               
               Cow position:chr13:8374646-8374961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:533-862
               
               
               Cow position:chr13:12670322-12670652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):110, 48

               
               
               Conread position:533-862
               
               
               Cow position:chr13:13089145-13088832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):65, 31

               
               
               Conread position:533-862
               
               
               Cow position:chr13:13954262-13954596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 123

               
               
               Conread position:533-862
               
               
               Cow position:chr13:14878826-14879155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 47

               
               
               Conread position:533-862
               
               
               Cow position:chr13:15041346-15041675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):32, 131

               
               
               Conread position:533-862
               
               
               Cow position:chr13:15974740-15974418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):35, 87

               
               
               Conread position:533-862
               
               
               Cow position:chr13:17021603-17021926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 119

               
               
               Conread position:533-862
               
               
               Cow position:chr13:17292007-17292328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 171

               
               
               Conread position:533-862
               
               
               Cow position:chr13:17745365-17745058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):119, 59

               
               
               Conread position:533-862
               
               
               Cow position:chr13:18696968-18696623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 27

               
               
               Conread position:533-862
               
               
               Cow position:chr13:19223771-19223451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:533-862
               
               
               Cow position:chr13:19393415-19393096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):113, 35

               
               
               Conread position:533-862
               
               
               Cow position:chr13:20174876-20174537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):24, 119

               
               
               Conread position:533-862
               
               
               Cow position:chr13:20784714-20784394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 60

               
               
               Conread position:533-862
               
               
               Cow position:chr13:20820710-20821037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):66, 93

               
               
               Conread position:533-862
               
               
               Cow position:chr13:21107264-21106943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):120, 73

               
               
               Conread position:533-862
               
               
               Cow position:chr13:21241967-21242276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr13:25381088-25380744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):24, 101

               
               
               Conread position:533-862
               
               
               Cow position:chr13:27525139-27525459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:533-862
               
               
               Cow position:chr13:29831307-29831627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 111

               
               
               Conread position:533-862
               
               
               Cow position:chr13:34281802-34281481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:533-862
               
               
               Cow position:chr13:41806901-41806576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 253

               
               
               Conread position:533-862
               
               
               Cow position:chr13:42114147-42113815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 103

               
               
               Conread position:533-862
               
               
               Cow position:chr13:43480183-43479861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 113

               
               
               Conread position:533-862
               
               
               Cow position:chr13:45023086-45023423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 89

               
               
               Conread position:533-862
               
               
               Cow position:chr13:45353172-45352827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):27, 235

               
               
               Conread position:533-862
               
               
               Cow position:chr13:46112096-46111768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):30, 117

               
               
               Conread position:533-862
               
               
               Cow position:chr13:51528321-51528638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):65, 47

               
               
               Conread position:533-862
               
               
               Cow position:chr13:54583003-54582674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 201

               
               
               Conread position:533-862
               
               
               Cow position:chr13:56686558-56686243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):66, 55

               
               
               Conread position:533-864
               
               
               Cow position:chr13:15288803-15289121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:533-864
               
               
               Cow position:chr13:19022401-19022062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 225

               
               
               Conread position:533-864
               
               
               Cow position:chr13:21235561-21235870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:533-864
               
               
               Cow position:chr13:25579061-25579397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):32, 60

               
               
               Conread position:533-864
               
               
               Cow position:chr13:26261672-26261994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):24, 108

               
               
               Conread position:533-864
               
               
               Cow position:chr13:32017400-32017718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):66, 103

               
               
               Conread position:533-864
               
               
               Cow position:chr13:58763506-58763811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):219, 49

               
               
               Conread position:534-708
               
               
               Cow position:chr13:626685-626509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 58

               
               
               Conread position:534-774
               
               
               Cow position:chr13:6153657-6153898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):29, 117

               
               
               Conread position:534-789
               
               
               Cow position:chr13:12207168-12206920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 109

               
               
               Conread position:534-789
               
               
               Cow position:chr13:25434995-25435252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:534-818
               
               
               Cow position:chr13:5758216-5758501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):68, 112

               
               
               Conread position:534-822
               
               
               Cow position:chr13:20679473-20679177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):39, 129

               
               
               Conread position:534-858
               
               
               Cow position:chr13:25817647-25817333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:534-859
               
               
               Cow position:chr13:32283249-32282928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):218, 64

               
               
               Conread position:534-860
               
               
               Cow position:chr13:20893511-20893842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):7, 67

               
               
               Conread position:534-861
               
               
               Cow position:chr13:152079-151771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:534-861
               
               
               Cow position:chr13:3160516-3160203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):68, 47

               
               
               Conread position:534-862
               
               
               Cow position:chr13:14063397-14063721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 47

               
               
               Conread position:534-862
               
               
               Cow position:chr13:15192765-15193088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 115

               
               
               Conread position:534-862
               
               
               Cow position:chr13:18166858-18166532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):68, 113

               
               
               Conread position:534-862
               
               
               Cow position:chr13:21287962-21288285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 38

               
               
               Conread position:534-862
               
               
               Cow position:chr13:24369705-24369385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:534-862
               
               
               Cow position:chr13:37804004-37803679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):178, 66

               
               
               Conread position:534-862
               
               
               Cow position:chr13:47007605-47007913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:534-864
               
               
               Cow position:chr13:11808683-11808379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:535-706
               
               
               Cow position:chr13:52922216-52922049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):64, 105

               
               
               Conread position:535-732
               
               
               Cow position:chr13:24376613-24376421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:535-774
               
               
               Cow position:chr13:15166943-15166704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 159

               
               
               Conread position:535-774
               
               
               Cow position:chr13:15903140-15902910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):211, 58

               
               
               Conread position:535-788
               
               
               Cow position:chr13:53566719-53566473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):64, 133

               
               
               Conread position:535-790
               
               
               Cow position:chr13:20839687-20839436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):64, 105

               
               
               Conread position:535-802
               
               
               Cow position:chr13:43184749-43185020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):64, 10

               
               
               Conread position:535-807
               
               
               Cow position:chr13:55316065-55316342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):64, 256

               
               
               Conread position:535-808
               
               
               Cow position:chr13:23960689-23960948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 105

               
               
               Conread position:535-808
               
               
               Cow position:chr13:37381930-37381655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 122

               
               
               Conread position:535-850
               
               
               Cow position:chr13:1155584-1155895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 47

               
               
               Conread position:535-853
               
               
               Cow position:chr13:44278476-44278153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):23, 77

               
               
               Conread position:535-859
               
               
               Cow position:chr13:17158751-17159079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):64, 117

               
               
               Conread position:535-860
               
               
               Cow position:chr13:38329750-38329420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 258

               
               
               Conread position:535-862
               
               
               Cow position:chr13:2774251-2773915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 116

               
               
               Conread position:535-862
               
               
               Cow position:chr13:16247782-16247444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 111

               
               
               Conread position:535-862
               
               
               Cow position:chr13:19188425-19188114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):28, 118

               
               
               Conread position:535-862
               
               
               Cow position:chr13:20288454-20288138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 105

               
               
               Conread position:535-862
               
               
               Cow position:chr13:20497773-20497442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 23

               
               
               Conread position:535-862
               
               
               Cow position:chr13:48165301-48165623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):64, 60

               
               
               Conread position:535-862
               
               
               Cow position:chr13:48598034-48597709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):32, 160

               
               
               Conread position:535-862
               
               
               Cow position:chr13:52749354-52749663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):32, 61

               
               
               Conread position:536-795
               
               
               Cow position:chr13:12202489-12202225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:536-862
               
               
               Cow position:chr13:9906856-9906528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):66, 103

               
               
               Conread position:536-862
               
               
               Cow position:chr13:22085621-22085932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):63, 220

               
               
               Conread position:536-862
               
               
               Cow position:chr13:54702310-54701981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 109

               
               
               Conread position:536-862
               
               
               Cow position:chr13:60375365-60375688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):62, 164

               
               
               Conread position:537-754
               
               
               Cow position:chr13:1042843-1043063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:538-862
               
               
               Cow position:chr13:38698173-38697857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 109

               
               
               Conread position:539-689
               
               
               Cow position:chr13:55295503-55295652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):60, 100

               
               
               Conread position:539-754
               
               
               Cow position:chr13:6060890-6061102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:539-788
               
               
               Cow position:chr13:21176202-21176447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):60, 106

               
               
               Conread position:539-796
               
               
               Cow position:chr13:18835312-18835068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):60, 95

               
               
               Conread position:539-797
               
               
               Cow position:chr13:13176771-13176512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):61, 95

               
               
               Conread position:539-808
               
               
               Cow position:chr13:18172458-18172188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):60, 216

               
               
               Conread position:539-833
               
               
               Cow position:chr13:13261124-13260827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):60, 180

               
               
               Conread position:539-861
               
               
               Cow position:chr13:5671472-5671785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):221, 14

               
               
               Conread position:539-861
               
               
               Cow position:chr13:17114259-17114580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):113, 9

               
               
               Conread position:539-862
               
               
               Cow position:chr13:311550-311232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 107

               
               
               Conread position:540-860
               
               
               Cow position:chr13:15194613-15194919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):59, 217

               
               
               Conread position:540-861
               
               
               Cow position:chr13:14576325-14576016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):59, 65

               
               
               Conread position:540-862
               
               
               Cow position:chr13:19279209-19278895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 7

               
               
               Conread position:541-694
               
               
               Cow position:chr13:24060221-24060370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:541-771
               
               
               Cow position:chr13:34555714-34555939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):102, 58

               
               
               Conread position:541-779
               
               
               Cow position:chr13:15884902-15885142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:541-862
               
               
               Cow position:chr13:5060863-5060538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:541-862
               
               
               Cow position:chr13:17568981-17569297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 111

               
               
               Conread position:541-862
               
               
               Cow position:chr13:21135782-21136112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:542-782
               
               
               Cow position:chr13:57494071-57494311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):60, 80

               
               
               Conread position:542-832
               
               
               Cow position:chr13:25496123-25495833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 108

               
               
               Conread position:542-861
               
               
               Cow position:chr13:57002845-57002523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 109

               
               
               Conread position:543-862
               
               
               Cow position:chr13:10988959-10989274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 117

               
               
               Conread position:543-864
               
               
               Cow position:chr13:6189500-6189802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:544-797
               
               
               Cow position:chr13:11820709-11820462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):158, 55

               
               
               Conread position:545-797
               
               
               Cow position:chr13:8402169-8401920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:548-804
               
               
               Cow position:chr13:19320646-19320388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:550-862
               
               
               Cow position:chr13:6861292-6860975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):21, 101

               
               
               Conread position:551-861
               
               
               Cow position:chr13:20534990-20534701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:552-859
               
               
               Cow position:chr13:20155107-20154809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):26, 105

               
               
               Conread position:554-784
               
               
               Cow position:chr13:7265020-7265243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):84, 50

               
               
               Conread position:555-861
               
               
               Cow position:chr13:15659378-15659076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):47, 13

               
               
               Conread position:556-806
               
               
               Cow position:chr13:47022462-47022221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:556-860
               
               
               Cow position:chr13:16038191-16038481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):43, 6

               
               
               Conread position:565-862
               
               
               Cow position:chr13:46329510-46329803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):34, 222

               
               
               Conread position:566-826
               
               
               Cow position:chr13:50750961-50751224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):33, 199

               
               
               Conread position:566-862
               
               
               Cow position:chr13:10924820-10925123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):33, 200

               
               
               Conread position:566-862
               
               
               Cow position:chr13:18999631-18999331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):96, 32

               
               
               Conread position:566-862
               
               
               Cow position:chr13:25978098-25978394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 184

               
               
               Conread position:566-862
               
               
               Cow position:chr13:46516153-46515859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):49, 36

               
               
               Conread position:566-862
               
               
               Cow position:chr13:54128500-54128798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 200

               
               
               Conread position:568-862
               
               
               Cow position:chr13:20137915-20137617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 84

               
               
               Conread position:571-771
               
               
               Cow position:chr13:48862008-48862206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):28, 146

               
               
               Conread position:577-862
               
               
               Cow position:chr13:13196323-13196041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):22, 70

               
               
               Conread position:578-864
               
               
               Cow position:chr13:18299485-18299192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):12, 26

               
               
               Conread position:583-862
               
               
               Cow position:chr13:21127266-21127541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:585-809
               
               
               Cow position:chr13:9981767-9981992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):14, 114

               
               
               Conread position:589-860
               
               
               Cow position:chr13:36877121-36876867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 44

               
               
               Conread position:589-862
               
               
               Cow position:chr13:15757190-15756916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):10, 63

               
               
               Conread position:589-862
               
               
               Cow position:chr13:25504601-25504335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):252, 9

               
               
               Conread position:598-862
               
               
               Cow position:chr13:18197547-18197808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:598-862
               
               
               Cow position:chr13:20314559-20314825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):23, 189

               
               
               Conread position:601-782
               
               
               Cow position:chr13:18181716-18181897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:601-862
               
               
               Cow position:chr13:21170586-21170328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):104, 50

               
               
               Conread position:602-862
               
               
               Cow position:chr13:35557049-35557311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:603-862
               
               
               Cow position:chr13:11103136-11103408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:604-862
               
               
               Cow position:chr13:15239466-15239712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):250, 44

               
               
               Conread position:605-861
               
               
               Cow position:chr13:17089470-17089712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:609-861
               
               
               Cow position:chr13:21171523-21171771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:609-862
               
               
               Cow position:chr13:17611501-17611751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):143, 148

               
               
               Conread position:615-862
               
               
               Cow position:chr13:55494477-55494719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 175

               
               
               Conread position:615-864
               
               
               Cow position:chr13:28440492-28440735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 99

               
               
               Conread position:634-862
               
               
               Cow position:chr13:45439547-45439332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:639-862
               
               
               Cow position:chr13:21980955-21981170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:639-862
               
               
               Cow position:chr13:56535476-56535267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):34, 58

               
               
               Conread position:641-862
               
               
               Cow position:chr13:6926535-6926312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):148, 5

               
               
               Conread position:651-862
               
               
               Cow position:chr13:19598657-19598865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:651-864
               
               
               Cow position:chr13:14645060-14644851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):60, 41

               
               
               Conread position:661-862
               
               
               Cow position:chr13:16908216-16908013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:661-862
               
               
               Cow position:chr13:53850824-53850620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):13, 125

               
               
               Conread position:662-862
               
               
               Cow position:chr13:8450328-8450133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:662-862
               
               
               Cow position:chr13:37614192-37614398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:666-862
               
               
               Cow position:chr13:57985944-57986132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:670-862
               
               
               Cow position:chr13:57769999-57770183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):89, 45

               
               
               Conread position:676-862
               
               
               Cow position:chr13:33854700-33854881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:680-861
               
               
               Cow position:chr13:52913853-52913677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:680-862
               
               
               Cow position:chr13:37554894-37555071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:682-850
               
               
               Cow position:chr13:10711437-10711603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:692-862
               
               
               Cow position:chr13:16525255-16525428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):81, 46

               
               
               Conread position:715-860
               
               
               Cow position:chr13:23823089-23823228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:715-864
               
               
               Cow position:chr13:23478847-23478698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:719-861
               
               
               Cow position:chr13:43342509-43342368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:734-860
               
               
               Cow position:chr13:62304497-62304371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:512-862
               
               
               Cow position:chr14:35503567-35503219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:527-859
               
               
               Cow position:chr14:23682452-23682126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:527-862
               
               
               Cow position:chr14:38747854-38747535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):72, 7

               
               
               Conread position:528-804
               
               
               Cow position:chr14:34984051-34983780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 97

               
               
               Conread position:530-803
               
               
               Cow position:chr14:29632700-29632964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:530-857
               
               
               Cow position:chr14:24922289-24921959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):27, 193

               
               
               Conread position:530-861
               
               
               Cow position:chr14:8101975-8101654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:530-862
               
               
               Cow position:chr14:20010123-20010458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):69, 122

               
               
               Conread position:530-862
               
               
               Cow position:chr14:20826661-20826347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:531-808
               
               
               Cow position:chr14:10630940-10631209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):34, 30

               
               
               Conread position:531-815
               
               
               Cow position:chr14:15054804-15055089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):74, 254

               
               
               Conread position:531-862
               
               
               Cow position:chr14:39770048-39770365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):68, 117

               
               
               Conread position:533-761
               
               
               Cow position:chr14:25378311-25378539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 102

               
               
               Conread position:533-772
               
               
               Cow position:chr14:40433103-40432871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):66, 100

               
               
               Conread position:533-781
               
               
               Cow position:chr14:20384800-20385049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 123

               
               
               Conread position:533-783
               
               
               Cow position:chr14:34082971-34083230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):75, 253

               
               
               Conread position:533-783
               
               
               Cow position:chr14:35018572-35018819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):69, 77

               
               
               Conread position:533-789
               
               
               Cow position:chr14:17841106-17841363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):66, 223

               
               
               Conread position:533-793
               
               
               Cow position:chr14:39778933-39778672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):109, 56

               
               
               Conread position:533-794
               
               
               Cow position:chr14:16256949-16256684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):157, 66

               
               
               Conread position:533-794
               
               
               Cow position:chr14:19372524-19372264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 227

               
               
               Conread position:533-794
               
               
               Cow position:chr14:39037419-39037151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 198

               
               
               Conread position:533-795
               
               
               Cow position:chr14:24796244-24796512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 112

               
               
               Conread position:533-800
               
               
               Cow position:chr14:27591771-27592037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):13, 34

               
               
               Conread position:533-808
               
               
               Cow position:chr14:19129694-19129417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):24, 121

               
               
               Conread position:533-808
               
               
               Cow position:chr14:45605274-45605007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):66, 120

               
               
               Conread position:533-809
               
               
               Cow position:chr14:8750258-8749985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):65, 180

               
               
               Conread position:533-823
               
               
               Cow position:chr14:4991181-4990898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):111, 38

               
               
               Conread position:533-823
               
               
               Cow position:chr14:37131838-37131558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):66, 192

               
               
               Conread position:533-838
               
               
               Cow position:chr14:19618569-19618872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):66, 35

               
               
               Conread position:533-843
               
               
               Cow position:chr14:24608149-24607836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 181

               
               
               Conread position:533-844
               
               
               Cow position:chr14:16549821-16550123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):66, 117

               
               
               Conread position:533-853
               
               
               Cow position:chr14:33751705-33751401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):287, 50

               
               
               Conread position:533-857
               
               
               Cow position:chr14:37103393-37103068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):239, 48

               
               
               Conread position:533-859
               
               
               Cow position:chr14:1646009-1646325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 101

               
               
               Conread position:533-859
               
               
               Cow position:chr14:20110540-20110862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 84

               
               
               Conread position:533-859
               
               
               Cow position:chr14:28115003-28115332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:533-859
               
               
               Cow position:chr14:39434077-39434395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):26, 15

               
               
               Conread position:533-860
               
               
               Cow position:chr14:13385553-13385224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 65

               
               
               Conread position:533-860
               
               
               Cow position:chr14:33791369-33791051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:533-861
               
               
               Cow position:chr14:15997584-15997894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):33, 41

               
               
               Conread position:533-861
               
               
               Cow position:chr14:18345551-18345867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 66

               
               
               Conread position:533-861
               
               
               Cow position:chr14:24387631-24387308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:533-861
               
               
               Cow position:chr14:36167121-36166797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 48

               
               
               Conread position:533-861
               
               
               Cow position:chr14:40165605-40165286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:533-861
               
               
               Cow position:chr14:42330534-42330203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):199, 102

               
               
               Conread position:533-862
               
               
               Cow position:chr14:6599768-6600096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):35, 226

               
               
               Conread position:533-862
               
               
               Cow position:chr14:11043310-11043638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 67

               
               
               Conread position:533-862
               
               
               Cow position:chr14:15492779-15492447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):66, 119

               
               
               Conread position:533-862
               
               
               Cow position:chr14:16760579-16760255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr14:19593953-19594279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):105, 40

               
               
               Conread position:533-862
               
               
               Cow position:chr14:20016518-20016854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):24, 213

               
               
               Conread position:533-862
               
               
               Cow position:chr14:20640444-20640773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 170

               
               
               Conread position:533-862
               
               
               Cow position:chr14:22989215-22988891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 9

               
               
               Conread position:533-862
               
               
               Cow position:chr14:24417067-24416750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 82

               
               
               Conread position:533-862
               
               
               Cow position:chr14:28378551-28378213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):32, 122

               
               
               Conread position:533-862
               
               
               Cow position:chr14:33247250-33247564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 67

               
               
               Conread position:533-862
               
               
               Cow position:chr14:36254524-36254833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):62, 104

               
               
               Conread position:533-862
               
               
               Cow position:chr14:40329627-40329297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):28, 68

               
               
               Conread position:533-862
               
               
               Cow position:chr14:41211036-41210720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr14:41749575-41749900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 99

               
               
               Conread position:533-862
               
               
               Cow position:chr14:42154781-42155111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 126

               
               
               Conread position:533-862
               
               
               Cow position:chr14:47672702-47673022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):51, 115

               
               
               Conread position:533-862
               
               
               Cow position:chr14:48427256-48426928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 73

               
               
               Conread position:533-862
               
               
               Cow position:chr14:48838778-48838447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):69, 107

               
               
               Conread position:533-863
               
               
               Cow position:chr14:27848381-27848034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:248
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):93, 66

               
               
               Conread position:533-864
               
               
               Cow position:chr14:13846170-13845843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 66

               
               
               Conread position:533-864
               
               
               Cow position:chr14:14949027-14949360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 127

               
               
               Conread position:533-864
               
               
               Cow position:chr14:45677406-45677085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):106, 29

               
               
               Conread position:534-727
               
               
               Cow position:chr14:42596562-42596373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):41, 68

               
               
               Conread position:534-790
               
               
               Cow position:chr14:13810120-13809867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):33, 145

               
               
               Conread position:534-794
               
               
               Cow position:chr14:19863248-19863509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:534-808
               
               
               Cow position:chr14:33830479-33830211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 113

               
               
               Conread position:534-838
               
               
               Cow position:chr14:19189218-19188930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):134, 63

               
               
               Conread position:534-854
               
               
               Cow position:chr14:20932797-20932486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):29, 117

               
               
               Conread position:534-859
               
               
               Cow position:chr14:13042938-13042618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 100

               
               
               Conread position:534-860
               
               
               Cow position:chr14:21933159-21933487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):65, 85

               
               
               Conread position:534-860
               
               
               Cow position:chr14:44084297-44084618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 17

               
               
               Conread position:534-861
               
               
               Cow position:chr14:5630343-5630025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):63, 116

               
               
               Conread position:534-861
               
               
               Cow position:chr14:21357733-21357414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 92

               
               
               Conread position:534-861
               
               
               Cow position:chr14:26442160-26442489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):65, 28

               
               
               Conread position:534-862
               
               
               Cow position:chr14:18309117-18309444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):65, 38

               
               
               Conread position:534-862
               
               
               Cow position:chr14:24237007-24236678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):31, 67

               
               
               Conread position:534-862
               
               
               Cow position:chr14:25986699-25986368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):24, 121

               
               
               Conread position:534-862
               
               
               Cow position:chr14:26433062-26433393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):243, 62

               
               
               Conread position:534-862
               
               
               Cow position:chr14:33456858-33457189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 222

               
               
               Conread position:534-864
               
               
               Cow position:chr14:33714501-33714820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:535-695
               
               
               Cow position:chr14:11819942-11820098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 111

               
               
               Conread position:535-808
               
               
               Cow position:chr14:24981638-24981368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 118

               
               
               Conread position:535-862
               
               
               Cow position:chr14:1715913-1715584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):23, 116

               
               
               Conread position:535-862
               
               
               Cow position:chr14:28304608-28304931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 59

               
               
               Conread position:535-862
               
               
               Cow position:chr14:35420580-35420906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 100

               
               
               Conread position:535-864
               
               
               Cow position:chr14:4202912-4203238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 253

               
               
               Conread position:539-845
               
               
               Cow position:chr14:48740694-48740997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 109

               
               
               Conread position:539-859
               
               
               Cow position:chr14:26628347-26628667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):19, 57

               
               
               Conread position:539-862
               
               
               Cow position:chr14:10078444-10078110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):60, 24

               
               
               Conread position:540-862
               
               
               Cow position:chr14:49824450-49824757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):81, 24

               
               
               Conread position:540-864
               
               
               Cow position:chr14:33341934-33341605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):25, 111

               
               
               Conread position:541-862
               
               
               Cow position:chr14:12511726-12512035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 104

               
               
               Conread position:543-787
               
               
               Cow position:chr14:9308399-9308160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 38

               
               
               Conread position:543-864
               
               
               Cow position:chr14:23080591-23080900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 110

               
               
               Conread position:544-864
               
               
               Cow position:chr14:34199677-34200005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):55, 94

               
               
               Conread position:546-804
               
               
               Cow position:chr14:20600556-20600300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 80

               
               
               Conread position:550-795
               
               
               Cow position:chr14:32371579-32371816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):49, 25

               
               
               Conread position:551-852
               
               
               Cow position:chr14:41809488-41809789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):13, 85

               
               
               Conread position:551-862
               
               
               Cow position:chr14:3948936-3949248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 49

               
               
               Conread position:556-862
               
               
               Cow position:chr14:40754085-40754388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 10

               
               
               Conread position:556-864
               
               
               Cow position:chr14:26654973-26655283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:565-862
               
               
               Cow position:chr14:11469997-11470294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 131

               
               
               Conread position:566-783
               
               
               Cow position:chr14:29698208-29698427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 43

               
               
               Conread position:566-800
               
               
               Cow position:chr14:19360044-19359806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):32, 42

               
               
               Conread position:566-852
               
               
               Cow position:chr14:5025432-5025144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 65

               
               
               Conread position:566-862
               
               
               Cow position:chr14:12244232-12244526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):33, 190

               
               
               Conread position:566-862
               
               
               Cow position:chr14:19851783-19852080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):33, 150

               
               
               Conread position:566-862
               
               
               Cow position:chr14:23424407-23424121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:566-862
               
               
               Cow position:chr14:23443168-23442882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:566-862
               
               
               Cow position:chr14:26222894-26222592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 278

               
               
               Conread position:566-864
               
               
               Cow position:chr14:12954233-12954521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):7, 42

               
               
               Conread position:570-848
               
               
               Cow position:chr14:33300851-33300564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 94

               
               
               Conread position:585-862
               
               
               Cow position:chr14:16524606-16524325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):58, 163

               
               
               Conread position:591-862
               
               
               Cow position:chr14:4282383-4282654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 61

               
               
               Conread position:591-862
               
               
               Cow position:chr14:12072825-12073100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 60

               
               
               Conread position:601-845
               
               
               Cow position:chr14:24945375-24945624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:606-861
               
               
               Cow position:chr14:25225840-25225589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):47, 236

               
               
               Conread position:609-753
               
               
               Cow position:chr14:2345175-2345031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:609-861
               
               
               Cow position:chr14:25228244-25228004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:614-859
               
               
               Cow position:chr14:7636394-7636640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):85, 35

               
               
               Conread position:615-808
               
               
               Cow position:chr14:34096471-34096658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):121, 30

               
               
               Conread position:634-862
               
               
               Cow position:chr14:10937763-10937526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):18, 125

               
               
               Conread position:637-862
               
               
               Cow position:chr14:43868389-43868162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):146, 99

               
               
               Conread position:640-862
               
               
               Cow position:chr14:4848425-4848206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):13, 55

               
               
               Conread position:641-861
               
               
               Cow position:chr14:29734288-29734503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:641-862
               
               
               Cow position:chr14:25903607-25903388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:647-862
               
               
               Cow position:chr14:18941216-18941432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):127, 91

               
               
               Conread position:661-863
               
               
               Cow position:chr14:21535250-21535448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:661-864
               
               
               Cow position:chr14:23078736-23078938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:662-862
               
               
               Cow position:chr14:11577123-11576925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):149, 83

               
               
               Conread position:662-862
               
               
               Cow position:chr14:11729055-11729251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:662-862
               
               
               Cow position:chr14:13731043-13731241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 111

               
               
               Conread position:684-854
               
               
               Cow position:chr14:20736644-20736478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:699-862
               
               
               Cow position:chr14:11280095-11280257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:475-848
               
               
               Cow position:chr15:5726611-5726229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 46

               
               
               Conread position:514-862
               
               
               Cow position:chr15:5158630-5158274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):51, 124

               
               
               Conread position:522-860
               
               
               Cow position:chr15:27900268-27900600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):45, 173

               
               
               Conread position:527-741
               
               
               Cow position:chr15:47279902-47280116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 109

               
               
               Conread position:527-779
               
               
               Cow position:chr15:26404512-26404268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):7, 75

               
               
               Conread position:527-843
               
               
               Cow position:chr15:11559119-11559432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 106

               
               
               Conread position:527-862
               
               
               Cow position:chr15:225572-225900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:527-862
               
               
               Cow position:chr15:19771369-19771040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):30, 125

               
               
               Conread position:530-753
               
               
               Cow position:chr15:13515601-13515377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:530-771
               
               
               Cow position:chr15:24128258-24128024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):105, 63

               
               
               Conread position:530-854
               
               
               Cow position:chr15:52482598-52482918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:530-854
               
               
               Cow position:chr15:53164251-53163931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:530-860
               
               
               Cow position:chr15:1329870-1330204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):69, 104

               
               
               Conread position:530-862
               
               
               Cow position:chr15:10088552-10088222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):27, 117

               
               
               Conread position:530-862
               
               
               Cow position:chr15:20472316-20472641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):35, 53

               
               
               Conread position:530-862
               
               
               Cow position:chr15:34896995-34896664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):86, 223

               
               
               Conread position:530-862
               
               
               Cow position:chr15:47822041-47821736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):69, 39

               
               
               Conread position:530-864
               
               
               Cow position:chr15:53036736-53037061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):69, 21

               
               
               Conread position:531-808
               
               
               Cow position:chr15:49258094-49257818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):71, 81

               
               
               Conread position:531-862
               
               
               Cow position:chr15:608378-608046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):41, 132

               
               
               Conread position:533-686
               
               
               Cow position:chr15:6586487-6586639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 82

               
               
               Conread position:533-688
               
               
               Cow position:chr15:23486939-23487092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):66, 22

               
               
               Conread position:533-714
               
               
               Cow position:chr15:9871184-9871367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-714
               
               
               Cow position:chr15:24305252-24305432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 27

               
               
               Conread position:533-727
               
               
               Cow position:chr15:38877077-38877267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:533-752
               
               
               Cow position:chr15:37205274-37205060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 88

               
               
               Conread position:533-766
               
               
               Cow position:chr15:41360734-41360952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):132, 38

               
               
               Conread position:533-774
               
               
               Cow position:chr15:4093703-4093943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):66, 112

               
               
               Conread position:533-784
               
               
               Cow position:chr15:43599414-43599169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:533-788
               
               
               Cow position:chr15:46868482-46868738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):64, 213

               
               
               Conread position:533-793
               
               
               Cow position:chr15:34206959-34207216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 165

               
               
               Conread position:533-794
               
               
               Cow position:chr15:16307642-16307393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 82

               
               
               Conread position:533-796
               
               
               Cow position:chr15:20352059-20351801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):70, 31

               
               
               Conread position:533-804
               
               
               Cow position:chr15:50302413-50302142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):64, 97

               
               
               Conread position:533-808
               
               
               Cow position:chr15:10335986-10335712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):65, 138

               
               
               Conread position:533-808
               
               
               Cow position:chr15:16583476-16583732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:533-809
               
               
               Cow position:chr15:13554584-13554309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):34, 122

               
               
               Conread position:533-829
               
               
               Cow position:chr15:33285111-33284810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):32, 103

               
               
               Conread position:533-837
               
               
               Cow position:chr15:10512041-10512341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):86, 64

               
               
               Conread position:533-844
               
               
               Cow position:chr15:1083146-1083452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):69, 90

               
               
               Conread position:533-848
               
               
               Cow position:chr15:11560282-11560601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):28, 122

               
               
               Conread position:533-852
               
               
               Cow position:chr15:16018264-16017946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:533-852
               
               
               Cow position:chr15:45479236-45478912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 122

               
               
               Conread position:533-854
               
               
               Cow position:chr15:5234774-5235080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 76

               
               
               Conread position:533-859
               
               
               Cow position:chr15:286708-286378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):72, 29

               
               
               Conread position:533-859
               
               
               Cow position:chr15:4295994-4295665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):96, 117

               
               
               Conread position:533-859
               
               
               Cow position:chr15:26079134-26079440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:533-860
               
               
               Cow position:chr15:794787-795112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):66, 47

               
               
               Conread position:533-860
               
               
               Cow position:chr15:23696681-23696997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:533-861
               
               
               Cow position:chr15:8354273-8353945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 254

               
               
               Conread position:533-861
               
               
               Cow position:chr15:21894011-21893684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 179

               
               
               Conread position:533-862
               
               
               Cow position:chr15:275873-275546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):221, 44

               
               
               Conread position:533-862
               
               
               Cow position:chr15:1722621-1722938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr15:3700056-3700380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):66, 158

               
               
               Conread position:533-862
               
               
               Cow position:chr15:4138363-4138037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):38, 118

               
               
               Conread position:533-862
               
               
               Cow position:chr15:11011375-11011690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):69, 119

               
               
               Conread position:533-862
               
               
               Cow position:chr15:11658339-11658680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):66, 138

               
               
               Conread position:533-862
               
               
               Cow position:chr15:11995796-11996125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):34, 120

               
               
               Conread position:533-862
               
               
               Cow position:chr15:12304871-12304542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 117

               
               
               Conread position:533-862
               
               
               Cow position:chr15:14870972-14870658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):66, 58

               
               
               Conread position:533-862
               
               
               Cow position:chr15:16261542-16261233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):66, 8

               
               
               Conread position:533-862
               
               
               Cow position:chr15:16543228-16543535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr15:16667273-16667595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):98, 63

               
               
               Conread position:533-862
               
               
               Cow position:chr15:16823167-16822853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):67, 181

               
               
               Conread position:533-862
               
               
               Cow position:chr15:18671223-18671546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):66, 227

               
               
               Conread position:533-862
               
               
               Cow position:chr15:20081986-20081677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):196, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr15:20370227-20370549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):66, 102

               
               
               Conread position:533-862
               
               
               Cow position:chr15:20459070-20459408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):31, 134

               
               
               Conread position:533-862
               
               
               Cow position:chr15:20534215-20534550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):45, 60

               
               
               Conread position:533-862
               
               
               Cow position:chr15:21941617-21941945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):24, 51

               
               
               Conread position:533-862
               
               
               Cow position:chr15:22532467-22532156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 105

               
               
               Conread position:533-862
               
               
               Cow position:chr15:22938540-22938864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 67

               
               
               Conread position:533-862
               
               
               Cow position:chr15:23275764-23275436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:533-862
               
               
               Cow position:chr15:23572449-23572786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 157

               
               
               Conread position:533-862
               
               
               Cow position:chr15:24994291-24994608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr15:25208539-25208856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):252, 58

               
               
               Conread position:533-862
               
               
               Cow position:chr15:25907138-25906821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:533-862
               
               
               Cow position:chr15:26896485-26896796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):94, 64

               
               
               Conread position:533-862
               
               
               Cow position:chr15:31857818-31857492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):66, 104

               
               
               Conread position:533-862
               
               
               Cow position:chr15:33643319-33642993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 58

               
               
               Conread position:533-862
               
               
               Cow position:chr15:36391897-36391574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:533-862
               
               
               Cow position:chr15:36888053-36887742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr15:37381857-37381532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 128

               
               
               Conread position:533-862
               
               
               Cow position:chr15:39598472-39598148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):66, 92

               
               
               Conread position:533-862
               
               
               Cow position:chr15:41125341-41125654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:533-862
               
               
               Cow position:chr15:43827544-43827869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):66, 100

               
               
               Conread position:533-862
               
               
               Cow position:chr15:46563264-46563574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 20

               
               
               Conread position:533-862
               
               
               Cow position:chr15:47843881-47844185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr15:52611539-52611190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-863
               
               
               Cow position:chr15:6970212-6969889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):272, 60

               
               
               Conread position:533-864
               
               
               Cow position:chr15:10456783-10457127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):65, 128

               
               
               Conread position:533-864
               
               
               Cow position:chr15:14576564-14576231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):66, 256

               
               
               Conread position:533-864
               
               
               Cow position:chr15:17196371-17196046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 92

               
               
               Conread position:533-864
               
               
               Cow position:chr15:22531886-22531574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:534-695
               
               
               Cow position:chr15:15707882-15708045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:534-698
               
               
               Cow position:chr15:23703003-23702845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):68, 100

               
               
               Conread position:534-794
               
               
               Cow position:chr15:21388939-21389191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):23, 101

               
               
               Conread position:534-808
               
               
               Cow position:chr15:29331232-29330960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):68, 41

               
               
               Conread position:534-808
               
               
               Cow position:chr15:39621573-39621294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 126

               
               
               Conread position:534-808
               
               
               Cow position:chr15:42788922-42789190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):65, 43

               
               
               Conread position:534-823
               
               
               Cow position:chr15:6530620-6530905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):65, 41

               
               
               Conread position:534-846
               
               
               Cow position:chr15:6462268-6462574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):23, 119

               
               
               Conread position:534-846
               
               
               Cow position:chr15:21908164-21907862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):65, 114

               
               
               Conread position:534-854
               
               
               Cow position:chr15:36353897-36353580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 76

               
               
               Conread position:534-857
               
               
               Cow position:chr15:44658586-44658274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):25, 113

               
               
               Conread position:534-858
               
               
               Cow position:chr15:2952900-2953226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):26, 62

               
               
               Conread position:534-860
               
               
               Cow position:chr15:25666994-25667320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 67

               
               
               Conread position:534-861
               
               
               Cow position:chr15:245005-244686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):263, 65

               
               
               Conread position:534-862
               
               
               Cow position:chr15:2968565-2968237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):68, 50

               
               
               Conread position:534-862
               
               
               Cow position:chr15:4178708-4179036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):65, 86

               
               
               Conread position:534-862
               
               
               Cow position:chr15:16112630-16112297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):34, 92

               
               
               Conread position:534-862
               
               
               Cow position:chr15:17337587-17337275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):65, 110

               
               
               Conread position:534-862
               
               
               Cow position:chr15:17870057-17870389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):65, 89

               
               
               Conread position:534-862
               
               
               Cow position:chr15:22939096-22939421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):65, 92

               
               
               Conread position:534-862
               
               
               Cow position:chr15:30047314-30047651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):65, 171

               
               
               Conread position:534-862
               
               
               Cow position:chr15:36435435-36435105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):24, 114

               
               
               Conread position:534-862
               
               
               Cow position:chr15:44377504-44377174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):24, 112

               
               
               Conread position:534-862
               
               
               Cow position:chr15:53716661-53716337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 76

               
               
               Conread position:534-864
               
               
               Cow position:chr15:26903425-26903094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):65, 193

               
               
               Conread position:534-864
               
               
               Cow position:chr15:27972986-27973305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:535-750
               
               
               Cow position:chr15:50322823-50322608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 113

               
               
               Conread position:535-754
               
               
               Cow position:chr15:13387307-13387087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):64, 166

               
               
               Conread position:535-768
               
               
               Cow position:chr15:23567893-23568131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):25, 120

               
               
               Conread position:535-832
               
               
               Cow position:chr15:14505653-14505370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 81

               
               
               Conread position:535-854
               
               
               Cow position:chr15:17763135-17762819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):64, 165

               
               
               Conread position:535-859
               
               
               Cow position:chr15:10608078-10608403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):66, 111

               
               
               Conread position:535-862
               
               
               Cow position:chr15:20390474-20390807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 179

               
               
               Conread position:535-862
               
               
               Cow position:chr15:33306337-33306023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):64, 90

               
               
               Conread position:535-862
               
               
               Cow position:chr15:36259375-36259694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:536-708
               
               
               Cow position:chr15:40009424-40009598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:536-746
               
               
               Cow position:chr15:24044872-24045083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):172, 63

               
               
               Conread position:536-861
               
               
               Cow position:chr15:2380583-2380269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):63, 179

               
               
               Conread position:536-862
               
               
               Cow position:chr15:49274178-49273865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:537-862
               
               
               Cow position:chr15:4485367-4485051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):31, 88

               
               
               Conread position:539-774
               
               
               Cow position:chr15:29340287-29340051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):102, 60

               
               
               Conread position:539-798
               
               
               Cow position:chr15:30986062-30986329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 58

               
               
               Conread position:539-854
               
               
               Cow position:chr15:24981969-24982268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):60, 84

               
               
               Conread position:539-862
               
               
               Cow position:chr15:31137241-31137562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):19, 107

               
               
               Conread position:539-862
               
               
               Cow position:chr15:40957801-40957481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):60, 52

               
               
               Conread position:540-852
               
               
               Cow position:chr15:16439606-16439921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 93

               
               
               Conread position:540-861
               
               
               Cow position:chr15:1503127-1502817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:540-862
               
               
               Cow position:chr15:20391054-20391374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 15

               
               
               Conread position:541-848
               
               
               Cow position:chr15:43913866-43914181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):24, 113

               
               
               Conread position:542-854
               
               
               Cow position:chr15:10231521-10231832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 221

               
               
               Conread position:542-864
               
               
               Cow position:chr15:35838868-35839196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):17, 107

               
               
               Conread position:543-862
               
               
               Cow position:chr15:30470750-30471076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):59, 235

               
               
               Conread position:544-861
               
               
               Cow position:chr15:662250-662560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 18

               
               
               Conread position:545-782
               
               
               Cow position:chr15:12655697-12655934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):118, 93

               
               
               Conread position:547-862
               
               
               Cow position:chr15:51307464-51307767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):55, 213

               
               
               Conread position:555-864
               
               
               Cow position:chr15:5717917-5717620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 25

               
               
               Conread position:557-861
               
               
               Cow position:chr15:47042429-47042739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):175, 14

               
               
               Conread position:558-862
               
               
               Cow position:chr15:24967993-24967704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 50

               
               
               Conread position:565-862
               
               
               Cow position:chr15:49784093-49784378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:566-857
               
               
               Cow position:chr15:34284215-34284502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):33, 49

               
               
               Conread position:566-861
               
               
               Cow position:chr15:12785620-12785331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:566-862
               
               
               Cow position:chr15:31928702-31928995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):33, 49

               
               
               Conread position:566-864
               
               
               Cow position:chr15:14888444-14888736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):33, 199

               
               
               Conread position:567-845
               
               
               Cow position:chr15:16927902-16928173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):35, 25

               
               
               Conread position:570-862
               
               
               Cow position:chr15:9465870-9465577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):29, 61

               
               
               Conread position:570-862
               
               
               Cow position:chr15:33693170-33693469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):32, 69

               
               
               Conread position:571-816
               
               
               Cow position:chr15:35440884-35441128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):28, 143

               
               
               Conread position:577-862
               
               
               Cow position:chr15:40379397-40379115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):22, 69

               
               
               Conread position:584-804
               
               
               Cow position:chr15:21821167-21820951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):18, 125

               
               
               Conread position:586-752
               
               
               Cow position:chr15:18647554-18647392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):13, 126

               
               
               Conread position:590-862
               
               
               Cow position:chr15:10442331-10442608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):9, 90

               
               
               Conread position:591-797
               
               
               Cow position:chr15:16908603-16908402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):8, 34

               
               
               Conread position:598-862
               
               
               Cow position:chr15:13432657-13432385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 10

               
               
               Conread position:598-862
               
               
               Cow position:chr15:14988153-14987898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:601-828
               
               
               Cow position:chr15:5658000-5657773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):104, 67

               
               
               Conread position:603-809
               
               
               Cow position:chr15:26718762-26718965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:603-864
               
               
               Cow position:chr15:41056046-41056308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):33, 46

               
               
               Conread position:604-845
               
               
               Cow position:chr15:4694903-4694667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:605-845
               
               
               Cow position:chr15:13395707-13395468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 120

               
               
               Conread position:605-862
               
               
               Cow position:chr15:36952043-36952296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):25, 110

               
               
               Conread position:606-862
               
               
               Cow position:chr15:3695790-3695540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:609-798
               
               
               Cow position:chr15:44237571-44237384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):35, 43

               
               
               Conread position:611-823
               
               
               Cow position:chr15:40594351-40594564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:614-809
               
               
               Cow position:chr15:34751233-34751044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:614-864
               
               
               Cow position:chr15:52317206-52316961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 133

               
               
               Conread position:631-862
               
               
               Cow position:chr15:26851093-26851321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):68, 128

               
               
               Conread position:633-862
               
               
               Cow position:chr15:19553792-19554023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 12

               
               
               Conread position:634-862
               
               
               Cow position:chr15:49483756-49483529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 31

               
               
               Conread position:634-862
               
               
               Cow position:chr15:50333110-50332878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):22, 10

               
               
               Conread position:637-863
               
               
               Cow position:chr15:27063395-27063615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:647-862
               
               
               Cow position:chr15:9879260-9879477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):89, 202

               
               
               Conread position:651-861
               
               
               Cow position:chr15:49132171-49131963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:651-862
               
               
               Cow position:chr15:21903297-21903504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:652-862
               
               
               Cow position:chr15:26442327-26442117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:662-862
               
               
               Cow position:chr15:11908849-11909044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:665-862
               
               
               Cow position:chr15:2931467-2931668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):37, 63

               
               
               Conread position:673-844
               
               
               Cow position:chr15:34223957-34223786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):133, 113

               
               
               Conread position:677-859
               
               
               Cow position:chr15:36422699-36422524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:678-862
               
               
               Cow position:chr15:28099198-28099015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:680-845
               
               
               Cow position:chr15:848731-848564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):24, 99

               
               
               Conread position:680-862
               
               
               Cow position:chr15:41475746-41475924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:683-864
               
               
               Cow position:chr15:14964086-14964259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:689-861
               
               
               Cow position:chr15:46283842-46284012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:706-864
               
               
               Cow position:chr15:26849479-26849631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:715-864
               
               
               Cow position:chr15:840099-840246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):37, 45

               
               
               Conread position:521-803
               
               
               Cow position:chr16:40562078-40562360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 256

               
               
               Conread position:527-773
               
               
               Cow position:chr16:50873313-50873068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 115

               
               
               Conread position:527-790
               
               
               Cow position:chr16:48385547-48385287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):72, 96

               
               
               Conread position:527-809
               
               
               Cow position:chr16:29608373-29608642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):72, 7

               
               
               Conread position:527-860
               
               
               Cow position:chr16:19643742-19644071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):95, 75

               
               
               Conread position:527-862
               
               
               Cow position:chr16:24855395-24855721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):75, 122

               
               
               Conread position:527-862
               
               
               Cow position:chr16:46433474-46433137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 28

               
               
               Conread position:530-796
               
               
               Cow position:chr16:20069684-20069952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:530-815
               
               
               Cow position:chr16:10772989-10773260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 117

               
               
               Conread position:530-859
               
               
               Cow position:chr16:50688381-50688702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):299, 9

               
               
               Conread position:530-861
               
               
               Cow position:chr16:13989838-13990152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):65, 120

               
               
               Conread position:530-861
               
               
               Cow position:chr16:38243806-38243474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):37, 118

               
               
               Conread position:530-861
               
               
               Cow position:chr16:51500790-51501114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):68, 91

               
               
               Conread position:530-862
               
               
               Cow position:chr16:935586-935270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):72, 42

               
               
               Conread position:530-862
               
               
               Cow position:chr16:4910675-4910335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):34, 239

               
               
               Conread position:530-862
               
               
               Cow position:chr16:11082865-11083183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:530-862
               
               
               Cow position:chr16:13307007-13306684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:530-862
               
               
               Cow position:chr16:42444012-42444347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):69, 106

               
               
               Conread position:531-861
               
               
               Cow position:chr16:7442245-7441914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):34, 184

               
               
               Conread position:531-862
               
               
               Cow position:chr16:47964958-47964636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):68, 122

               
               
               Conread position:532-862
               
               
               Cow position:chr16:48095903-48095582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 52

               
               
               Conread position:533-742
               
               
               Cow position:chr16:13233089-13232881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:533-750
               
               
               Cow position:chr16:13752265-13752056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):66, 112

               
               
               Conread position:533-752
               
               
               Cow position:chr16:50521337-50521556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):66, 85

               
               
               Conread position:533-753
               
               
               Cow position:chr16:12060276-12060495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):69, 107

               
               
               Conread position:533-753
               
               
               Cow position:chr16:39514216-39513997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):66, 76

               
               
               Conread position:533-754
               
               
               Cow position:chr16:18402544-18402767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-774
               
               
               Cow position:chr16:42345744-42345513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-782
               
               
               Cow position:chr16:50417824-50417588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:533-787
               
               
               Cow position:chr16:11105412-11105665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):65, 222

               
               
               Conread position:533-787
               
               
               Cow position:chr16:11790876-11791123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):69, 88

               
               
               Conread position:533-788
               
               
               Cow position:chr16:3633972-3634230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):128, 65

               
               
               Conread position:533-789
               
               
               Cow position:chr16:5256859-5257111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):113, 60

               
               
               Conread position:533-789
               
               
               Cow position:chr16:48493038-48493295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:533-790
               
               
               Cow position:chr16:4626532-4626273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 66

               
               
               Conread position:533-790
               
               
               Cow position:chr16:8323123-8322867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:533-794
               
               
               Cow position:chr16:30715355-30715625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):69, 74

               
               
               Conread position:533-800
               
               
               Cow position:chr16:8812223-8811970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):66, 119

               
               
               Conread position:533-803
               
               
               Cow position:chr16:48191142-48190886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):69, 88

               
               
               Conread position:533-804
               
               
               Cow position:chr16:19003657-19003404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:533-804
               
               
               Cow position:chr16:20634019-20633745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):66, 139

               
               
               Conread position:533-807
               
               
               Cow position:chr16:7549827-7550101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):66, 48

               
               
               Conread position:533-807
               
               
               Cow position:chr16:11806535-11806803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):101, 65

               
               
               Conread position:533-807
               
               
               Cow position:chr16:39394436-39394700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):236, 66

               
               
               Conread position:533-808
               
               
               Cow position:chr16:20025306-20025576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):66, 116

               
               
               Conread position:533-808
               
               
               Cow position:chr16:48340836-48340563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):69, 27

               
               
               Conread position:533-808
               
               
               Cow position:chr16:52133656-52133382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):32, 116

               
               
               Conread position:533-809
               
               
               Cow position:chr16:37669877-37669601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):69, 113

               
               
               Conread position:533-809
               
               
               Cow position:chr16:41697228-41696957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:533-816
               
               
               Cow position:chr16:5636448-5636724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):43, 70

               
               
               Conread position:533-816
               
               
               Cow position:chr16:8933567-8933284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):32, 115

               
               
               Conread position:533-823
               
               
               Cow position:chr16:24825931-24826220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):66, 120

               
               
               Conread position:533-830
               
               
               Cow position:chr16:37452759-37452462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 123

               
               
               Conread position:533-832
               
               
               Cow position:chr16:54679528-54679820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):63, 91

               
               
               Conread position:533-837
               
               
               Cow position:chr16:5896278-5896582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):66, 162

               
               
               Conread position:533-839
               
               
               Cow position:chr16:33226679-33226374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):66, 117

               
               
               Conread position:533-842
               
               
               Cow position:chr16:11615373-11615076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):66, 77

               
               
               Conread position:533-845
               
               
               Cow position:chr16:42734154-42733848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):66, 22

               
               
               Conread position:533-845
               
               
               Cow position:chr16:48006628-48006325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):69, 42

               
               
               Conread position:533-848
               
               
               Cow position:chr16:26610497-26610815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):32, 69

               
               
               Conread position:533-848
               
               
               Cow position:chr16:47643276-47643609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:533-852
               
               
               Cow position:chr16:6887586-6887271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):66, 47

               
               
               Conread position:533-852
               
               
               Cow position:chr16:31269000-31269320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):32, 50

               
               
               Conread position:533-852
               
               
               Cow position:chr16:44744279-44743953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):16, 125

               
               
               Conread position:533-854
               
               
               Cow position:chr16:45139531-45139843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:533-859
               
               
               Cow position:chr16:10592294-10592629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):66, 118

               
               
               Conread position:533-859
               
               
               Cow position:chr16:28191929-28192235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):66, 32

               
               
               Conread position:533-859
               
               
               Cow position:chr16:39165103-39165417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):28, 62

               
               
               Conread position:533-860
               
               
               Cow position:chr16:7665494-7665825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):30, 114

               
               
               Conread position:533-860
               
               
               Cow position:chr16:8068959-8068631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):69, 30

               
               
               Conread position:533-860
               
               
               Cow position:chr16:13611592-13611253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 16

               
               
               Conread position:533-861
               
               
               Cow position:chr16:3047482-3047156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):39, 46

               
               
               Conread position:533-861
               
               
               Cow position:chr16:4275882-4275556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):39, 46

               
               
               Conread position:533-861
               
               
               Cow position:chr16:14106505-14106830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):64, 91

               
               
               Conread position:533-861
               
               
               Cow position:chr16:15960432-15960092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):69, 191

               
               
               Conread position:533-861
               
               
               Cow position:chr16:52169925-52170239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):105, 10

               
               
               Conread position:533-862
               
               
               Cow position:chr16:238125-238453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 187

               
               
               Conread position:533-862
               
               
               Cow position:chr16:820107-820438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):28, 232

               
               
               Conread position:533-862
               
               
               Cow position:chr16:1549014-1548694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:533-862
               
               
               Cow position:chr16:7418243-7418560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:533-862
               
               
               Cow position:chr16:8066026-8065698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 70

               
               
               Conread position:533-862
               
               
               Cow position:chr16:8240006-8239677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):65, 78

               
               
               Conread position:533-862
               
               
               Cow position:chr16:11957725-11957391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):34, 246

               
               
               Conread position:533-862
               
               
               Cow position:chr16:13689524-13689850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 252

               
               
               Conread position:533-862
               
               
               Cow position:chr16:14242231-14242555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):69, 55

               
               
               Conread position:533-862
               
               
               Cow position:chr16:14685530-14685204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):66, 120

               
               
               Conread position:533-862
               
               
               Cow position:chr16:14754463-14754141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):64, 111

               
               
               Conread position:533-862
               
               
               Cow position:chr16:15824585-15824254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 88

               
               
               Conread position:533-862
               
               
               Cow position:chr16:17142795-17143125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):34, 87

               
               
               Conread position:533-862
               
               
               Cow position:chr16:18757981-18757648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:533-862
               
               
               Cow position:chr16:23563995-23564325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):34, 130

               
               
               Conread position:533-862
               
               
               Cow position:chr16:23681229-23681548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):66, 51

               
               
               Conread position:533-862
               
               
               Cow position:chr16:26649770-26649448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 101

               
               
               Conread position:533-862
               
               
               Cow position:chr16:27723072-27723398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):66, 234

               
               
               Conread position:533-862
               
               
               Cow position:chr16:29557768-29557437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):65, 99

               
               
               Conread position:533-862
               
               
               Cow position:chr16:31348908-31348575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):66, 196

               
               
               Conread position:533-862
               
               
               Cow position:chr16:32970219-32969895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:533-862
               
               
               Cow position:chr16:33198575-33198246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):259, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr16:33645874-33646202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr16:33704666-33704989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 116

               
               
               Conread position:533-862
               
               
               Cow position:chr16:35758071-35758388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):237, 65

               
               
               Conread position:533-862
               
               
               Cow position:chr16:38708971-38708649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:533-862
               
               
               Cow position:chr16:41752713-41752394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 98

               
               
               Conread position:533-862
               
               
               Cow position:chr16:43308706-43308378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 155

               
               
               Conread position:533-862
               
               
               Cow position:chr16:45677846-45678164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr16:47820433-47820761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 27

               
               
               Conread position:533-862
               
               
               Cow position:chr16:49229912-49229587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):69, 33

               
               
               Conread position:533-862
               
               
               Cow position:chr16:56231686-56231999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):66, 89

               
               
               Conread position:533-864
               
               
               Cow position:chr16:12320081-12320412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 76

               
               
               Conread position:533-864
               
               
               Cow position:chr16:14568622-14568302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):66, 35

               
               
               Conread position:533-864
               
               
               Cow position:chr16:29712279-29712605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 102

               
               
               Conread position:533-864
               
               
               Cow position:chr16:32781225-32781561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):65, 101

               
               
               Conread position:533-864
               
               
               Cow position:chr16:42078981-42078659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:533-864
               
               
               Cow position:chr16:45813842-45813509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):39, 8

               
               
               Conread position:533-864
               
               
               Cow position:chr16:52835024-52834712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:534-688
               
               
               Cow position:chr16:35168589-35168744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):111, 65

               
               
               Conread position:534-692
               
               
               Cow position:chr16:16424743-16424592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):65, 116

               
               
               Conread position:534-744
               
               
               Cow position:chr16:8279926-8279722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):110, 63

               
               
               Conread position:534-744
               
               
               Cow position:chr16:16548470-16548683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:534-789
               
               
               Cow position:chr16:14974672-14974429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:534-799
               
               
               Cow position:chr16:17288801-17289073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):65, 124

               
               
               Conread position:534-799
               
               
               Cow position:chr16:48494693-48494431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):65, 29

               
               
               Conread position:534-804
               
               
               Cow position:chr16:17945382-17945651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):65, 26

               
               
               Conread position:534-848
               
               
               Cow position:chr16:7504948-7505252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):65, 100

               
               
               Conread position:534-859
               
               
               Cow position:chr16:12273928-12274254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 197

               
               
               Conread position:534-861
               
               
               Cow position:chr16:25386841-25387155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 59

               
               
               Conread position:534-861
               
               
               Cow position:chr16:54579030-54579351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):252, 68

               
               
               Conread position:534-862
               
               
               Cow position:chr16:11008205-11008515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):65, 28

               
               
               Conread position:534-862
               
               
               Cow position:chr16:18205821-18206142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):65, 114

               
               
               Conread position:534-862
               
               
               Cow position:chr16:39474277-39473971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):65, 38

               
               
               Conread position:534-862
               
               
               Cow position:chr16:42092523-42092191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):65, 75

               
               
               Conread position:534-862
               
               
               Cow position:chr16:48956655-48956986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):53, 41

               
               
               Conread position:534-862
               
               
               Cow position:chr16:54225646-54225330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):218, 58

               
               
               Conread position:534-862
               
               
               Cow position:chr16:56082503-56082175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):7, 114

               
               
               Conread position:534-864
               
               
               Cow position:chr16:7010927-7011261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):10, 71

               
               
               Conread position:534-864
               
               
               Cow position:chr16:51598745-51598424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):65, 100

               
               
               Conread position:535-702
               
               
               Cow position:chr16:24148019-24148189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:535-777
               
               
               Cow position:chr16:13195480-13195237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 201

               
               
               Conread position:535-815
               
               
               Cow position:chr16:31079236-31078952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):56, 90

               
               
               Conread position:535-822
               
               
               Cow position:chr16:48370086-48369808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):224, 40

               
               
               Conread position:535-836
               
               
               Cow position:chr16:45609852-45610149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 18

               
               
               Conread position:535-853
               
               
               Cow position:chr16:50289011-50289329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):64, 238

               
               
               Conread position:535-859
               
               
               Cow position:chr16:9933020-9933344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:535-861
               
               
               Cow position:chr16:31117752-31117432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):64, 8

               
               
               Conread position:535-862
               
               
               Cow position:chr16:16597427-16597746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):64, 20

               
               
               Conread position:535-862
               
               
               Cow position:chr16:42399038-42398702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 69

               
               
               Conread position:535-862
               
               
               Cow position:chr16:52275269-52274948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 244

               
               
               Conread position:535-864
               
               
               Cow position:chr16:7075775-7076109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:536-790
               
               
               Cow position:chr16:42340058-42340312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):26, 59

               
               
               Conread position:536-808
               
               
               Cow position:chr16:5363758-5364033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):63, 242

               
               
               Conread position:536-846
               
               
               Cow position:chr16:41578088-41578397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 129

               
               
               Conread position:536-859
               
               
               Cow position:chr16:8366958-8366642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):110, 47

               
               
               Conread position:536-861
               
               
               Cow position:chr16:9904955-9905282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 27

               
               
               Conread position:536-862
               
               
               Cow position:chr16:48398389-48398070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 52

               
               
               Conread position:537-811
               
               
               Cow position:chr16:35188117-35188384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 116

               
               
               Conread position:539-788
               
               
               Cow position:chr16:17282530-17282772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:539-793
               
               
               Cow position:chr16:571048-570803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 95

               
               
               Conread position:539-803
               
               
               Cow position:chr16:9973633-9973372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):60, 118

               
               
               Conread position:539-857
               
               
               Cow position:chr16:3614612-3614919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):60, 27

               
               
               Conread position:539-860
               
               
               Cow position:chr16:25839484-25839796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 246

               
               
               Conread position:539-864
               
               
               Cow position:chr16:54710168-54709864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):62, 95

               
               
               Conread position:540-807
               
               
               Cow position:chr16:4059221-4059486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):62, 215

               
               
               Conread position:540-845
               
               
               Cow position:chr16:31978321-31978013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 71

               
               
               Conread position:540-852
               
               
               Cow position:chr16:19047572-19047256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):25, 116

               
               
               Conread position:540-852
               
               
               Cow position:chr16:21450710-21451027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):25, 115

               
               
               Conread position:540-861
               
               
               Cow position:chr16:47518704-47519018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):59, 252

               
               
               Conread position:540-862
               
               
               Cow position:chr16:13698378-13698705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):25, 208

               
               
               Conread position:540-863
               
               
               Cow position:chr16:10504699-10505002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:541-771
               
               
               Cow position:chr16:10352738-10352980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:541-846
               
               
               Cow position:chr16:33267583-33267892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:541-861
               
               
               Cow position:chr16:36121113-36120810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):20, 108

               
               
               Conread position:541-862
               
               
               Cow position:chr16:2223536-2223207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:542-754
               
               
               Cow position:chr16:36203749-36203538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):158, 47

               
               
               Conread position:542-860
               
               
               Cow position:chr16:39683240-39682914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):53, 99

               
               
               Conread position:542-860
               
               
               Cow position:chr16:48146789-48146469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):57, 68

               
               
               Conread position:543-859
               
               
               Cow position:chr16:25170258-25170577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):40, 113

               
               
               Conread position:543-862
               
               
               Cow position:chr16:4857226-4856912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):91, 49

               
               
               Conread position:543-862
               
               
               Cow position:chr16:23730056-23729731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):56, 11

               
               
               Conread position:544-860
               
               
               Cow position:chr16:45554313-45554619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:544-864
               
               
               Cow position:chr16:8737935-8738256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 106

               
               
               Conread position:545-808
               
               
               Cow position:chr16:39172284-39172016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):90, 54

               
               
               Conread position:546-862
               
               
               Cow position:chr16:424941-424622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 35

               
               
               Conread position:549-782
               
               
               Cow position:chr16:39402123-39401908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:551-862
               
               
               Cow position:chr16:53089463-53089146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 90

               
               
               Conread position:552-790
               
               
               Cow position:chr16:21762093-21761854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):53, 114

               
               
               Conread position:553-862
               
               
               Cow position:chr16:55233574-55233865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:555-852
               
               
               Cow position:chr16:2417708-2417409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):44, 78

               
               
               Conread position:555-864
               
               
               Cow position:chr16:34754079-34753764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 85

               
               
               Conread position:556-794
               
               
               Cow position:chr16:22206958-22207195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):93, 43

               
               
               Conread position:557-794
               
               
               Cow position:chr16:54226715-54226482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):42, 157

               
               
               Conread position:557-808
               
               
               Cow position:chr16:17903766-17903513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):42, 208

               
               
               Conread position:565-862
               
               
               Cow position:chr16:19052527-19052820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):21, 47

               
               
               Conread position:565-862
               
               
               Cow position:chr16:45121930-45122229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):34, 57

               
               
               Conread position:565-864
               
               
               Cow position:chr16:56796774-56796465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):34, 87

               
               
               Conread position:566-848
               
               
               Cow position:chr16:10032532-10032814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 83

               
               
               Conread position:566-862
               
               
               Cow position:chr16:22984650-22984937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:567-862
               
               
               Cow position:chr16:40514587-40514306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):32, 73

               
               
               Conread position:568-774
               
               
               Cow position:chr16:50667180-50667391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:568-862
               
               
               Cow position:chr16:45731494-45731218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 188

               
               
               Conread position:569-862
               
               
               Cow position:chr16:30186539-30186831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 198

               
               
               Conread position:571-808
               
               
               Cow position:chr16:3114434-3114673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:571-862
               
               
               Cow position:chr16:39516707-39516409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):47, 31

               
               
               Conread position:572-803
               
               
               Cow position:chr16:21039926-21040157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):27, 44

               
               
               Conread position:573-864
               
               
               Cow position:chr16:30305913-30305628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):71, 25

               
               
               Conread position:578-808
               
               
               Cow position:chr16:33054579-33054347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:583-803
               
               
               Cow position:chr16:34220093-34220315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):16, 182

               
               
               Conread position:583-864
               
               
               Cow position:chr16:19670438-19670169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:586-860
               
               
               Cow position:chr16:27701340-27701077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):13, 39

               
               
               Conread position:588-807
               
               
               Cow position:chr16:29527739-29527959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):57, 185

               
               
               Conread position:588-864
               
               
               Cow position:chr16:17135145-17134872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:601-861
               
               
               Cow position:chr16:11135054-11134799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:604-862
               
               
               Cow position:chr16:42977394-42977661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):48, 175

               
               
               Conread position:606-861
               
               
               Cow position:chr16:20824417-20824663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):31, 18

               
               
               Conread position:606-862
               
               
               Cow position:chr16:31561685-31561941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):53, 33

               
               
               Conread position:607-854
               
               
               Cow position:chr16:45294477-45294725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):36, 50

               
               
               Conread position:611-861
               
               
               Cow position:chr16:31880824-31880566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):172, 27

               
               
               Conread position:615-861
               
               
               Cow position:chr16:7136406-7136160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 163

               
               
               Conread position:627-862
               
               
               Cow position:chr16:12010048-12010285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:628-852
               
               
               Cow position:chr16:56243930-56243711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:638-802
               
               
               Cow position:chr16:33235196-33235036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:641-839
               
               
               Cow position:chr16:21370220-21370021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):170, 75

               
               
               Conread position:648-861
               
               
               Cow position:chr16:11584430-11584221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:648-862
               
               
               Cow position:chr16:1582952-1582742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:650-864
               
               
               Cow position:chr16:15945280-15945063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):154, 126

               
               
               Conread position:651-861
               
               
               Cow position:chr16:7723678-7723885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:651-861
               
               
               Cow position:chr16:32893605-32893805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):117, 112

               
               
               Conread position:651-862
               
               
               Cow position:chr16:17460144-17460364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:652-862
               
               
               Cow position:chr16:31149356-31149562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:656-862
               
               
               Cow position:chr16:24142977-24142765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):11, 63

               
               
               Conread position:660-862
               
               
               Cow position:chr16:14376768-14376968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):130, 56

               
               
               Conread position:661-862
               
               
               Cow position:chr16:7812677-7812880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):110, 92

               
               
               Conread position:661-864
               
               
               Cow position:chr16:50286500-50286702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:662-859
               
               
               Cow position:chr16:48613488-48613294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:662-862
               
               
               Cow position:chr16:32142078-32142279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):130, 89

               
               
               Conread position:663-861
               
               
               Cow position:chr16:31484673-31484480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 115

               
               
               Conread position:663-862
               
               
               Cow position:chr16:12324444-12324641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):89, 94

               
               
               Conread position:668-862
               
               
               Cow position:chr16:34205070-34204878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):179, 119

               
               
               Conread position:673-862
               
               
               Cow position:chr16:16025435-16025631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:677-854
               
               
               Cow position:chr16:39385494-39385668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:680-853
               
               
               Cow position:chr16:53451711-53451882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:680-862
               
               
               Cow position:chr16:19478759-19478581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):89, 97

               
               
               Conread position:681-861
               
               
               Cow position:chr16:7912136-7912313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:700-862
               
               
               Cow position:chr16:51143825-51143986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:701-861
               
               
               Cow position:chr16:8810067-8809911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):69, 62

               
               
               Conread position:703-862
               
               
               Cow position:chr16:49734116-49733958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:527-845
               
               
               Cow position:chr17:24824144-24824459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 7

               
               
               Conread position:527-856
               
               
               Cow position:chr17:16371149-16371479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):36, 126

               
               
               Conread position:527-859
               
               
               Cow position:chr17:32279011-32278680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):72, 111

               
               
               Conread position:527-859
               
               
               Cow position:chr17:32280561-32280892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):72, 111

               
               
               Conread position:527-861
               
               
               Cow position:chr17:11215999-11215667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 187

               
               
               Conread position:527-862
               
               
               Cow position:chr17:908638-908966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 26

               
               
               Conread position:527-862
               
               
               Cow position:chr17:12447508-12447175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):72, 121

               
               
               Conread position:527-862
               
               
               Cow position:chr17:25128454-25128127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 116

               
               
               Conread position:529-862
               
               
               Cow position:chr17:25616155-25616472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):318, 68

               
               
               Conread position:530-750
               
               
               Cow position:chr17:923772-923995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):35, 64

               
               
               Conread position:530-781
               
               
               Cow position:chr17:25502007-25502257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 180

               
               
               Conread position:530-796
               
               
               Cow position:chr17:20990297-20990030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):69, 85

               
               
               Conread position:530-860
               
               
               Cow position:chr17:20072184-20071878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):42, 48

               
               
               Conread position:530-861
               
               
               Cow position:chr17:15102987-15102663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):259, 63

               
               
               Conread position:530-862
               
               
               Cow position:chr17:1063085-1063395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):168, 12

               
               
               Conread position:530-862
               
               
               Cow position:chr17:11618481-11618814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):35, 15

               
               
               Conread position:530-862
               
               
               Cow position:chr17:15684401-15684730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):31, 116

               
               
               Conread position:530-862
               
               
               Cow position:chr17:27429479-27429783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:530-862
               
               
               Cow position:chr17:33288757-33288431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:530-862
               
               
               Cow position:chr17:36331068-36330740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):44, 117

               
               
               Conread position:530-864
               
               
               Cow position:chr17:21325230-21325573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):69, 92

               
               
               Conread position:530-864
               
               
               Cow position:chr17:21959790-21959454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):30, 130

               
               
               Conread position:531-762
               
               
               Cow position:chr17:14762221-14761994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 41

               
               
               Conread position:531-847
               
               
               Cow position:chr17:8837051-8836736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):68, 187

               
               
               Conread position:531-862
               
               
               Cow position:chr17:3577440-3577754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):107, 68

               
               
               Conread position:531-862
               
               
               Cow position:chr17:6423659-6423981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 251

               
               
               Conread position:531-862
               
               
               Cow position:chr17:40771733-40772057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):26, 118

               
               
               Conread position:533-707
               
               
               Cow position:chr17:12059194-12059020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):62, 162

               
               
               Conread position:533-714
               
               
               Cow position:chr17:32009537-32009360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 11

               
               
               Conread position:533-745
               
               
               Cow position:chr17:31231211-31231012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 59

               
               
               Conread position:533-748
               
               
               Cow position:chr17:3781945-3782157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 68

               
               
               Conread position:533-753
               
               
               Cow position:chr17:21243883-21243671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:533-753
               
               
               Cow position:chr17:38646960-38647180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):99, 66

               
               
               Conread position:533-754
               
               
               Cow position:chr17:41892164-41891941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:533-761
               
               
               Cow position:chr17:4968014-4968239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 61

               
               
               Conread position:533-766
               
               
               Cow position:chr17:18592344-18592574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):105, 63

               
               
               Conread position:533-770
               
               
               Cow position:chr17:23563889-23563659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):66, 10

               
               
               Conread position:533-774
               
               
               Cow position:chr17:11172716-11172476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):51, 46

               
               
               Conread position:533-782
               
               
               Cow position:chr17:1040646-1040892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):66, 116

               
               
               Conread position:533-786
               
               
               Cow position:chr17:33658170-33657917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):66, 224

               
               
               Conread position:533-790
               
               
               Cow position:chr17:24580396-24580139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):66, 204

               
               
               Conread position:533-794
               
               
               Cow position:chr17:12591067-12591334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-794
               
               
               Cow position:chr17:22806636-22806385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:533-796
               
               
               Cow position:chr17:39736081-39736336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:533-804
               
               
               Cow position:chr17:1410339-1410069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 119

               
               
               Conread position:533-804
               
               
               Cow position:chr17:21335794-21335521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 231

               
               
               Conread position:533-807
               
               
               Cow position:chr17:27048059-27048327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 48

               
               
               Conread position:533-807
               
               
               Cow position:chr17:35573663-35573923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:533-808
               
               
               Cow position:chr17:9117547-9117820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:533-808
               
               
               Cow position:chr17:24553908-24554171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):31, 67

               
               
               Conread position:533-808
               
               
               Cow position:chr17:32273786-32273515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:533-809
               
               
               Cow position:chr17:35339015-35338744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:533-812
               
               
               Cow position:chr17:8079217-8079494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:533-813
               
               
               Cow position:chr17:1061159-1060868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):66, 266

               
               
               Conread position:533-815
               
               
               Cow position:chr17:24821766-24822041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):137, 65

               
               
               Conread position:533-823
               
               
               Cow position:chr17:29157317-29157603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):105, 66

               
               
               Conread position:533-823
               
               
               Cow position:chr17:35126608-35126892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):65, 205

               
               
               Conread position:533-835
               
               
               Cow position:chr17:14652880-14652576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:533-837
               
               
               Cow position:chr17:25097363-25097655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):66, 117

               
               
               Conread position:533-843
               
               
               Cow position:chr17:28285130-28284823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):66, 72

               
               
               Conread position:533-852
               
               
               Cow position:chr17:6329012-6329329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):30, 119

               
               
               Conread position:533-854
               
               
               Cow position:chr17:40851883-40852187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):209, 67

               
               
               Conread position:533-858
               
               
               Cow position:chr17:7142764-7143080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):25, 71

               
               
               Conread position:533-859
               
               
               Cow position:chr17:1634589-1634269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 65

               
               
               Conread position:533-860
               
               
               Cow position:chr17:1035700-1035369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):23, 122

               
               
               Conread position:533-860
               
               
               Cow position:chr17:6318957-6318643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:533-860
               
               
               Cow position:chr17:25901097-25901433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-861
               
               
               Cow position:chr17:11832219-11831892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 83

               
               
               Conread position:533-861
               
               
               Cow position:chr17:32989382-32989699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 59

               
               
               Conread position:533-861
               
               
               Cow position:chr17:32993718-32993401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 59

               
               
               Conread position:533-862
               
               
               Cow position:chr17:1562871-1562564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):66, 85

               
               
               Conread position:533-862
               
               
               Cow position:chr17:3467667-3467978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr17:7810834-7810520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):257, 47

               
               
               Conread position:533-862
               
               
               Cow position:chr17:13922379-13922709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):66, 215

               
               
               Conread position:533-862
               
               
               Cow position:chr17:14003718-14004051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 230

               
               
               Conread position:533-862
               
               
               Cow position:chr17:14033740-14033414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 115

               
               
               Conread position:533-862
               
               
               Cow position:chr17:15664568-15664903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 229

               
               
               Conread position:533-862
               
               
               Cow position:chr17:16446532-16446199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:533-862
               
               
               Cow position:chr17:17059333-17059645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr17:20884423-20884752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):66, 112

               
               
               Conread position:533-862
               
               
               Cow position:chr17:20993140-20992811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):30, 160

               
               
               Conread position:533-862
               
               
               Cow position:chr17:21003928-21003604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 181

               
               
               Conread position:533-862
               
               
               Cow position:chr17:23101307-23100995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:533-862
               
               
               Cow position:chr17:24004283-24004600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):110, 45

               
               
               Conread position:533-862
               
               
               Cow position:chr17:24559193-24559520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):30, 100

               
               
               Conread position:533-862
               
               
               Cow position:chr17:25611989-25612314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):69, 92

               
               
               Conread position:533-862
               
               
               Cow position:chr17:26000017-26000346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):66, 175

               
               
               Conread position:533-862
               
               
               Cow position:chr17:26818549-26818245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr17:27058653-27058322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):66, 9

               
               
               Conread position:533-862
               
               
               Cow position:chr17:28468036-28468351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):263, 59

               
               
               Conread position:533-862
               
               
               Cow position:chr17:31037480-31037150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 255

               
               
               Conread position:533-862
               
               
               Cow position:chr17:32027558-32027220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 123

               
               
               Conread position:533-862
               
               
               Cow position:chr17:32348974-32349290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:533-862
               
               
               Cow position:chr17:32419214-32418890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):49, 80

               
               
               Conread position:533-862
               
               
               Cow position:chr17:32471890-32471561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):31, 257

               
               
               Conread position:533-862
               
               
               Cow position:chr17:38614856-38615190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):31, 122

               
               
               Conread position:533-862
               
               
               Cow position:chr17:40673286-40673600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:533-864
               
               
               Cow position:chr17:5423169-5422849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 11

               
               
               Conread position:533-864
               
               
               Cow position:chr17:12536568-12536245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 254

               
               
               Conread position:533-864
               
               
               Cow position:chr17:20932229-20932558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):41, 118

               
               
               Conread position:533-864
               
               
               Cow position:chr17:21115050-21114726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-864
               
               
               Cow position:chr17:24883666-24883341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):66, 27

               
               
               Conread position:533-864
               
               
               Cow position:chr17:30713249-30713575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 100

               
               
               Conread position:534-695
               
               
               Cow position:chr17:34207917-34207754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:534-728
               
               
               Cow position:chr17:15333811-15333616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:534-796
               
               
               Cow position:chr17:26764918-26765183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 88

               
               
               Conread position:534-808
               
               
               Cow position:chr17:9746416-9746685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):65, 100

               
               
               Conread position:534-808
               
               
               Cow position:chr17:15340851-15340578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):163, 105

               
               
               Conread position:534-808
               
               
               Cow position:chr17:34751504-34751231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):67, 100

               
               
               Conread position:534-837
               
               
               Cow position:chr17:30665171-30665474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 101

               
               
               Conread position:534-847
               
               
               Cow position:chr17:34079202-34078896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 67

               
               
               Conread position:534-854
               
               
               Cow position:chr17:12108706-12109027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):37, 113

               
               
               Conread position:534-858
               
               
               Cow position:chr17:11912596-11912282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):119, 63

               
               
               Conread position:534-860
               
               
               Cow position:chr17:20800717-20801039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 113

               
               
               Conread position:534-861
               
               
               Cow position:chr17:20022616-20022288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 118

               
               
               Conread position:534-862
               
               
               Cow position:chr17:11101899-11101591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):65, 100

               
               
               Conread position:534-862
               
               
               Cow position:chr17:11397571-11397894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):23, 34

               
               
               Conread position:534-862
               
               
               Cow position:chr17:13244139-13243827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):65, 91

               
               
               Conread position:534-862
               
               
               Cow position:chr17:21293143-21292811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 69

               
               
               Conread position:534-862
               
               
               Cow position:chr17:30728423-30728734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):256, 28

               
               
               Conread position:534-862
               
               
               Cow position:chr17:33933847-33933521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 100

               
               
               Conread position:535-705
               
               
               Cow position:chr17:10510756-10510586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:535-794
               
               
               Cow position:chr17:39857295-39857543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:535-796
               
               
               Cow position:chr17:30718517-30718258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 90

               
               
               Conread position:535-830
               
               
               Cow position:chr17:18495618-18495324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):64, 180

               
               
               Conread position:535-831
               
               
               Cow position:chr17:18109184-18108890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 116

               
               
               Conread position:535-843
               
               
               Cow position:chr17:5767817-5768107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:535-855
               
               
               Cow position:chr17:18473081-18473383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:535-859
               
               
               Cow position:chr17:14026014-14025683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 116

               
               
               Conread position:535-861
               
               
               Cow position:chr17:13940418-13940092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 87

               
               
               Conread position:535-862
               
               
               Cow position:chr17:11362080-11362403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):27, 67

               
               
               Conread position:535-862
               
               
               Cow position:chr17:17222246-17222571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 33

               
               
               Conread position:535-862
               
               
               Cow position:chr17:20780413-20780752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:535-862
               
               
               Cow position:chr17:21599779-21599453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):29, 106

               
               
               Conread position:535-862
               
               
               Cow position:chr17:21738977-21738638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):30, 124

               
               
               Conread position:535-862
               
               
               Cow position:chr17:25514221-25513891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:535-862
               
               
               Cow position:chr17:37699454-37699114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 122

               
               
               Conread position:535-864
               
               
               Cow position:chr17:4601642-4601333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):64, 74

               
               
               Conread position:536-804
               
               
               Cow position:chr17:9911668-9911927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):95, 58

               
               
               Conread position:536-861
               
               
               Cow position:chr17:4106083-4105766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):269, 57

               
               
               Conread position:536-861
               
               
               Cow position:chr17:4121819-4121501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):256, 57

               
               
               Conread position:536-861
               
               
               Cow position:chr17:9853893-9854208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 64

               
               
               Conread position:536-862
               
               
               Cow position:chr17:11664685-11664350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 52

               
               
               Conread position:536-862
               
               
               Cow position:chr17:20090718-20090402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):236, 30

               
               
               Conread position:536-862
               
               
               Cow position:chr17:25117793-25118114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):22, 104

               
               
               Conread position:539-803
               
               
               Cow position:chr17:265582-265837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:539-816
               
               
               Cow position:chr17:40289092-40288817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 87

               
               
               Conread position:539-831
               
               
               Cow position:chr17:4225587-4225309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:539-861
               
               
               Cow position:chr17:10459031-10458708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):60, 95

               
               
               Conread position:539-862
               
               
               Cow position:chr17:32138509-32138189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 33

               
               
               Conread position:539-864
               
               
               Cow position:chr17:24587528-24587852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 246

               
               
               Conread position:539-864
               
               
               Cow position:chr17:27274468-27274797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 108

               
               
               Conread position:540-860
               
               
               Cow position:chr17:20157518-20157833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):59, 40

               
               
               Conread position:541-828
               
               
               Cow position:chr17:21489716-21489432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):27, 112

               
               
               Conread position:541-859
               
               
               Cow position:chr17:36864539-36864847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):58, 79

               
               
               Conread position:541-864
               
               
               Cow position:chr17:33793072-33793381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):33, 173

               
               
               Conread position:542-808
               
               
               Cow position:chr17:40331674-40331936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):22, 86

               
               
               Conread position:542-856
               
               
               Cow position:chr17:26233917-26233605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):23, 41

               
               
               Conread position:542-864
               
               
               Cow position:chr17:9966119-9965793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):17, 107

               
               
               Conread position:542-864
               
               
               Cow position:chr17:24928383-24928707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 117

               
               
               Conread position:543-807
               
               
               Cow position:chr17:23517032-23516772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):56, 109

               
               
               Conread position:543-808
               
               
               Cow position:chr17:27203134-27202870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 103

               
               
               Conread position:544-862
               
               
               Cow position:chr17:10432065-10431737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):55, 106

               
               
               Conread position:545-860
               
               
               Cow position:chr17:20848434-20848749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):18, 68

               
               
               Conread position:545-862
               
               
               Cow position:chr17:25342828-25342513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):15, 117

               
               
               Conread position:547-791
               
               
               Cow position:chr17:21758224-21757984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):52, 99

               
               
               Conread position:551-774
               
               
               Cow position:chr17:11368932-11368710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:552-862
               
               
               Cow position:chr17:36275259-36275563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 12

               
               
               Conread position:554-862
               
               
               Cow position:chr17:9824590-9824894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 79

               
               
               Conread position:555-862
               
               
               Cow position:chr17:11839639-11839950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:556-862
               
               
               Cow position:chr17:29025991-29026302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 93

               
               
               Conread position:562-750
               
               
               Cow position:chr17:21478993-21478806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 153

               
               
               Conread position:565-861
               
               
               Cow position:chr17:40638882-40639173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 81

               
               
               Conread position:565-862
               
               
               Cow position:chr17:12511043-12510758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:565-862
               
               
               Cow position:chr17:22051661-22051364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):17, 76

               
               
               Conread position:566-803
               
               
               Cow position:chr17:2275408-2275639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 73

               
               
               Conread position:566-862
               
               
               Cow position:chr17:27795579-27795882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):33, 85

               
               
               Conread position:566-862
               
               
               Cow position:chr17:31856604-31856899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):36, 198

               
               
               Conread position:566-862
               
               
               Cow position:chr17:39606362-39606649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):12, 50

               
               
               Conread position:567-843
               
               
               Cow position:chr17:24750851-24751125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:567-862
               
               
               Cow position:chr17:3153637-3153341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:568-862
               
               
               Cow position:chr17:1025885-1025607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):31, 70

               
               
               Conread position:568-862
               
               
               Cow position:chr17:34791131-34790838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):31, 82

               
               
               Conread position:573-861
               
               
               Cow position:chr17:30749972-30750274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):29, 211

               
               
               Conread position:577-861
               
               
               Cow position:chr17:5372585-5372306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):25, 81

               
               
               Conread position:583-862
               
               
               Cow position:chr17:25511195-25511469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):70, 19

               
               
               Conread position:584-854
               
               
               Cow position:chr17:25126303-25126563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):15, 65

               
               
               Conread position:585-808
               
               
               Cow position:chr17:22017135-22016917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):14, 153

               
               
               Conread position:585-861
               
               
               Cow position:chr17:21039516-21039782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:585-862
               
               
               Cow position:chr17:18934209-18934483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):14, 132

               
               
               Conread position:588-862
               
               
               Cow position:chr17:33155200-33154931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):11, 52

               
               
               Conread position:590-858
               
               
               Cow position:chr17:25800925-25800661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):9, 50

               
               
               Conread position:595-862
               
               
               Cow position:chr17:32333130-32332865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):7, 68

               
               
               Conread position:601-862
               
               
               Cow position:chr17:40412555-40412806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):171, 38

               
               
               Conread position:603-862
               
               
               Cow position:chr17:17044362-17044108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):156, 51

               
               
               Conread position:605-862
               
               
               Cow position:chr17:29995465-29995208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:606-862
               
               
               Cow position:chr17:8815164-8815414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):166, 173

               
               
               Conread position:609-858
               
               
               Cow position:chr17:26575254-26574999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):29, 43

               
               
               Conread position:609-860
               
               
               Cow position:chr17:12959082-12959327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):232, 47

               
               
               Conread position:610-803
               
               
               Cow position:chr17:18848183-18847989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:610-864
               
               
               Cow position:chr17:12325785-12325541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):142, 29

               
               
               Conread position:611-861
               
               
               Cow position:chr17:21793874-21793647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:611-864
               
               
               Cow position:chr17:45296394-45296635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:615-862
               
               
               Cow position:chr17:9932319-9932084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):144, 136

               
               
               Conread position:616-862
               
               
               Cow position:chr17:3388808-3389061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):195, 100

               
               
               Conread position:620-862
               
               
               Cow position:chr17:37341053-37340804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):35, 172

               
               
               Conread position:627-862
               
               
               Cow position:chr17:21466269-21466031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):167, 35

               
               
               Conread position:628-859
               
               
               Cow position:chr17:21472185-21471963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):164, 91

               
               
               Conread position:631-864
               
               
               Cow position:chr17:43315289-43315061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:635-862
               
               
               Cow position:chr17:25473281-25473054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):19, 151

               
               
               Conread position:639-862
               
               
               Cow position:chr17:26637854-26637629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):59, 144

               
               
               Conread position:640-844
               
               
               Cow position:chr17:40276746-40276950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):68, 79

               
               
               Conread position:648-862
               
               
               Cow position:chr17:42150405-42150615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:651-860
               
               
               Cow position:chr17:17034966-17035171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:652-862
               
               
               Cow position:chr17:7959198-7959406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):51, 97

               
               
               Conread position:661-862
               
               
               Cow position:chr17:946384-946583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:673-862
               
               
               Cow position:chr17:21718958-21718770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:677-862
               
               
               Cow position:chr17:10016322-10016504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):73, 77

               
               
               Conread position:680-860
               
               
               Cow position:chr17:26225073-26225253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):87, 76

               
               
               Conread position:680-862
               
               
               Cow position:chr17:12215212-12215026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:680-862
               
               
               Cow position:chr17:39963923-39964105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):114, 73

               
               
               Conread position:684-862
               
               
               Cow position:chr17:21676940-21677118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:687-862
               
               
               Cow position:chr17:7711490-7711663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):90, 68

               
               
               Conread position:688-862
               
               
               Cow position:chr17:24767234-24767061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):72, 67

               
               
               Conread position:692-861
               
               
               Cow position:chr17:20881751-20881589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:715-864
               
               
               Cow position:chr17:9260531-9260382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:725-861
               
               
               Cow position:chr17:2729827-2729691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:527-636
               
               
               Cow position:chr18:13293332-13293442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):72, 5

               
               
               Conread position:527-816
               
               
               Cow position:chr18:4796791-4797076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:527-857
               
               
               Cow position:chr18:50974475-50974137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):40, 93

               
               
               Conread position:527-861
               
               
               Cow position:chr18:5072592-5072265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 58

               
               
               Conread position:527-863
               
               
               Cow position:chr18:15614040-15613710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):7, 126

               
               
               Conread position:529-789
               
               
               Cow position:chr18:51850737-51850483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 117

               
               
               Conread position:530-792
               
               
               Cow position:chr18:4540055-4539798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):69, 110

               
               
               Conread position:530-793
               
               
               Cow position:chr18:1585293-1585030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):33, 10

               
               
               Conread position:530-803
               
               
               Cow position:chr18:38607047-38607316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):67, 187

               
               
               Conread position:530-846
               
               
               Cow position:chr18:46453051-46452746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):179, 69

               
               
               Conread position:530-854
               
               
               Cow position:chr18:29356803-29356488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 248

               
               
               Conread position:530-861
               
               
               Cow position:chr18:39623622-39623956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):30, 48

               
               
               Conread position:530-862
               
               
               Cow position:chr18:9010546-9010858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):69, 30

               
               
               Conread position:530-862
               
               
               Cow position:chr18:9557806-9558119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):16, 96

               
               
               Conread position:530-862
               
               
               Cow position:chr18:11867164-11867491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):203, 69

               
               
               Conread position:530-862
               
               
               Cow position:chr18:18919135-18918810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:530-862
               
               
               Cow position:chr18:42431783-42431461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):253, 67

               
               
               Conread position:530-862
               
               
               Cow position:chr18:45904070-45903743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:530-862
               
               
               Cow position:chr18:55119705-55120020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):69, 44

               
               
               Conread position:530-864
               
               
               Cow position:chr18:30341352-30341027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:531-750
               
               
               Cow position:chr18:15881032-15880802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):68, 8

               
               
               Conread position:531-864
               
               
               Cow position:chr18:2592344-2592005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):36, 188

               
               
               Conread position:532-793
               
               
               Cow position:chr18:55787754-55788006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):67, 125

               
               
               Conread position:532-823
               
               
               Cow position:chr18:56183767-56184048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):135, 67

               
               
               Conread position:532-862
               
               
               Cow position:chr18:19849930-19849618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):65, 145

               
               
               Conread position:533-689
               
               
               Cow position:chr18:15340620-15340463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 114

               
               
               Conread position:533-696
               
               
               Cow position:chr18:8105119-8104954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-733
               
               
               Cow position:chr18:6103270-6103072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):66, 27

               
               
               Conread position:533-749
               
               
               Cow position:chr18:4381118-4381335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 179

               
               
               Conread position:533-750
               
               
               Cow position:chr18:4182361-4182145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 34

               
               
               Conread position:533-751
               
               
               Cow position:chr18:5487077-5487285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):66, 51

               
               
               Conread position:533-753
               
               
               Cow position:chr18:16686510-16686290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):66, 114

               
               
               Conread position:533-773
               
               
               Cow position:chr18:23766586-23766344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-774
               
               
               Cow position:chr18:51212013-51212249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):111, 59

               
               
               Conread position:533-777
               
               
               Cow position:chr18:13507912-13507671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 181

               
               
               Conread position:533-783
               
               
               Cow position:chr18:11684815-11685057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:533-788
               
               
               Cow position:chr18:30794261-30794506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):109, 66

               
               
               Conread position:533-793
               
               
               Cow position:chr18:19619779-19620026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 63

               
               
               Conread position:533-793
               
               
               Cow position:chr18:36458758-36459014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):24, 121

               
               
               Conread position:533-793
               
               
               Cow position:chr18:51190764-51190514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:533-796
               
               
               Cow position:chr18:38686921-38687166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):66, 47

               
               
               Conread position:533-802
               
               
               Cow position:chr18:21740983-21740722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):65, 101

               
               
               Conread position:533-803
               
               
               Cow position:chr18:19273271-19273001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 7

               
               
               Conread position:533-803
               
               
               Cow position:chr18:34527272-34526999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 88

               
               
               Conread position:533-806
               
               
               Cow position:chr18:33007887-33008164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):66, 201

               
               
               Conread position:533-806
               
               
               Cow position:chr18:36230893-36230631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:533-808
               
               
               Cow position:chr18:27109470-27109193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 268

               
               
               Conread position:533-809
               
               
               Cow position:chr18:19896629-19896352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:533-809
               
               
               Cow position:chr18:28924007-28923746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:533-812
               
               
               Cow position:chr18:29058667-29058399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:533-827
               
               
               Cow position:chr18:7649824-7650104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 105

               
               
               Conread position:533-838
               
               
               Cow position:chr18:8299840-8300154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):47, 207

               
               
               Conread position:533-843
               
               
               Cow position:chr18:47511825-47512133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:533-845
               
               
               Cow position:chr18:10977380-10977076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-858
               
               
               Cow position:chr18:10904676-10904996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):41, 47

               
               
               Conread position:533-859
               
               
               Cow position:chr18:7415202-7414884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):32, 110

               
               
               Conread position:533-859
               
               
               Cow position:chr18:28101458-28101779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):66, 159

               
               
               Conread position:533-859
               
               
               Cow position:chr18:42479761-42479430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:533-860
               
               
               Cow position:chr18:18340141-18339811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):153, 187

               
               
               Conread position:533-860
               
               
               Cow position:chr18:19193539-19193221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 129

               
               
               Conread position:533-860
               
               
               Cow position:chr18:43555698-43555362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):34, 22

               
               
               Conread position:533-860
               
               
               Cow position:chr18:46048588-46048905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 16

               
               
               Conread position:533-860
               
               
               Cow position:chr18:56181632-56181308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):69, 19

               
               
               Conread position:533-861
               
               
               Cow position:chr18:5578133-5578447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):66, 157

               
               
               Conread position:533-861
               
               
               Cow position:chr18:10575935-10576255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):165, 60

               
               
               Conread position:533-861
               
               
               Cow position:chr18:18592303-18592616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 32

               
               
               Conread position:533-861
               
               
               Cow position:chr18:30360308-30359991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):240, 42

               
               
               Conread position:533-861
               
               
               Cow position:chr18:37382267-37381939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):27, 159

               
               
               Conread position:533-861
               
               
               Cow position:chr18:42432267-42431940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:533-861
               
               
               Cow position:chr18:46276482-46276147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:533-862
               
               
               Cow position:chr18:4496061-4495737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:533-862
               
               
               Cow position:chr18:6309910-6310233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 30

               
               
               Conread position:533-862
               
               
               Cow position:chr18:6881521-6881205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):77, 61

               
               
               Conread position:533-862
               
               
               Cow position:chr18:11691581-11691253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 88

               
               
               Conread position:533-862
               
               
               Cow position:chr18:12242103-12242430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):12, 36

               
               
               Conread position:533-862
               
               
               Cow position:chr18:17391150-17390837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):257, 60

               
               
               Conread position:533-862
               
               
               Cow position:chr18:19143689-19143351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):30, 124

               
               
               Conread position:533-862
               
               
               Cow position:chr18:31082500-31082190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):270, 31

               
               
               Conread position:533-862
               
               
               Cow position:chr18:37002460-37002790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):66, 116

               
               
               Conread position:533-862
               
               
               Cow position:chr18:38985518-38985844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):69, 101

               
               
               Conread position:533-862
               
               
               Cow position:chr18:39875432-39875092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):66, 124

               
               
               Conread position:533-862
               
               
               Cow position:chr18:42747420-42747751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):34, 69

               
               
               Conread position:533-862
               
               
               Cow position:chr18:45104614-45104276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):66, 26

               
               
               Conread position:533-862
               
               
               Cow position:chr18:49100543-49100232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):68, 95

               
               
               Conread position:533-863
               
               
               Cow position:chr18:22121054-22120731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):65, 119

               
               
               Conread position:533-864
               
               
               Cow position:chr18:7108953-7109286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):29, 119

               
               
               Conread position:534-722
               
               
               Cow position:chr18:44549087-44548901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):65, 180

               
               
               Conread position:534-795
               
               
               Cow position:chr18:50082422-50082172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:534-845
               
               
               Cow position:chr18:33896600-33896275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):65, 50

               
               
               Conread position:534-859
               
               
               Cow position:chr18:18962009-18961682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):24, 75

               
               
               Conread position:534-861
               
               
               Cow position:chr18:5766240-5766560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):65, 100

               
               
               Conread position:534-861
               
               
               Cow position:chr18:55498889-55499222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):44, 85

               
               
               Conread position:534-862
               
               
               Cow position:chr18:9365744-9366075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 122

               
               
               Conread position:534-862
               
               
               Cow position:chr18:10214369-10214038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 231

               
               
               Conread position:534-862
               
               
               Cow position:chr18:12023807-12023486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):68, 100

               
               
               Conread position:534-862
               
               
               Cow position:chr18:29065546-29065239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:534-862
               
               
               Cow position:chr18:37023725-37023384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:534-862
               
               
               Cow position:chr18:40759043-40759374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):65, 14

               
               
               Conread position:534-862
               
               
               Cow position:chr18:51406083-51405764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):23, 126

               
               
               Conread position:534-862
               
               
               Cow position:chr18:54572465-54572135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):24, 117

               
               
               Conread position:534-864
               
               
               Cow position:chr18:20641663-20641346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):36, 29

               
               
               Conread position:535-748
               
               
               Cow position:chr18:25206361-25206148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):60, 140

               
               
               Conread position:535-774
               
               
               Cow position:chr18:33299731-33299970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:535-785
               
               
               Cow position:chr18:18369534-18369285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):67, 163

               
               
               Conread position:535-785
               
               
               Cow position:chr18:45570843-45571089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:535-846
               
               
               Cow position:chr18:55000907-55000600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):173, 29

               
               
               Conread position:535-861
               
               
               Cow position:chr18:10891343-10891663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):11, 57

               
               
               Conread position:535-861
               
               
               Cow position:chr18:55505235-55505555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 115

               
               
               Conread position:535-862
               
               
               Cow position:chr18:3027533-3027189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):64, 184

               
               
               Conread position:535-862
               
               
               Cow position:chr18:9066527-9066853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):32, 54

               
               
               Conread position:535-862
               
               
               Cow position:chr18:9974495-9974177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:535-862
               
               
               Cow position:chr18:28930801-28930488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):29, 82

               
               
               Conread position:535-862
               
               
               Cow position:chr18:51643541-51643216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 68

               
               
               Conread position:535-864
               
               
               Cow position:chr18:44262455-44262778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:536-779
               
               
               Cow position:chr18:55461878-55461638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 94

               
               
               Conread position:536-808
               
               
               Cow position:chr18:25647422-25647149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):61, 179

               
               
               Conread position:536-837
               
               
               Cow position:chr18:29958327-29958045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:536-845
               
               
               Cow position:chr18:28658079-28657778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 114

               
               
               Conread position:536-862
               
               
               Cow position:chr18:4884681-4884366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 40

               
               
               Conread position:536-862
               
               
               Cow position:chr18:7952031-7952363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):115, 63

               
               
               Conread position:536-862
               
               
               Cow position:chr18:8171255-8170938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 15

               
               
               Conread position:536-862
               
               
               Cow position:chr18:12270340-12270665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):63, 39

               
               
               Conread position:536-862
               
               
               Cow position:chr18:20126135-20126445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 88

               
               
               Conread position:536-862
               
               
               Cow position:chr18:30586390-30586083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:537-861
               
               
               Cow position:chr18:24266582-24266251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):30, 221

               
               
               Conread position:538-862
               
               
               Cow position:chr18:1399520-1399199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):69, 102

               
               
               Conread position:539-808
               
               
               Cow position:chr18:48633625-48633871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:539-861
               
               
               Cow position:chr18:11183778-11184091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 101

               
               
               Conread position:539-861
               
               
               Cow position:chr18:29371701-29372022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):24, 108

               
               
               Conread position:539-862
               
               
               Cow position:chr18:1954757-1954427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 71

               
               
               Conread position:539-862
               
               
               Cow position:chr18:3211704-3212033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 220

               
               
               Conread position:539-862
               
               
               Cow position:chr18:11790766-11791071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):98, 60

               
               
               Conread position:539-862
               
               
               Cow position:chr18:32883139-32883445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):60, 95

               
               
               Conread position:539-862
               
               
               Cow position:chr18:43950656-43950981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 106

               
               
               Conread position:539-862
               
               
               Cow position:chr18:48713382-48713695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):60, 111

               
               
               Conread position:539-864
               
               
               Cow position:chr18:3158770-3158428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):45, 132

               
               
               Conread position:540-862
               
               
               Cow position:chr18:12118006-12117700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:540-864
               
               
               Cow position:chr18:7965069-7965387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):103, 22

               
               
               Conread position:541-862
               
               
               Cow position:chr18:247847-247544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):58, 115

               
               
               Conread position:541-862
               
               
               Cow position:chr18:42455190-42454866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):105, 57

               
               
               Conread position:542-862
               
               
               Cow position:chr18:22790236-22789937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:543-860
               
               
               Cow position:chr18:11779496-11779804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):56, 38

               
               
               Conread position:544-861
               
               
               Cow position:chr18:4556331-4556012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):23, 103

               
               
               Conread position:544-862
               
               
               Cow position:chr18:12113539-12113215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):55, 193

               
               
               Conread position:544-862
               
               
               Cow position:chr18:19640817-19641127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 80

               
               
               Conread position:545-708
               
               
               Cow position:chr18:29991680-29991510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:545-734
               
               
               Cow position:chr18:11831967-11832146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):54, 65

               
               
               Conread position:545-864
               
               
               Cow position:chr18:35873913-35874233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):14, 57

               
               
               Conread position:546-862
               
               
               Cow position:chr18:42290482-42290181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:546-862
               
               
               Cow position:chr18:42293210-42292909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:547-745
               
               
               Cow position:chr18:30248290-30248102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):138, 50

               
               
               Conread position:549-862
               
               
               Cow position:chr18:20462851-20462554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 30

               
               
               Conread position:551-864
               
               
               Cow position:chr18:19687864-19688183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):16, 217

               
               
               Conread position:552-864
               
               
               Cow position:chr18:3417019-3417321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):252, 41

               
               
               Conread position:553-862
               
               
               Cow position:chr18:50095547-50095256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):144, 46

               
               
               Conread position:555-862
               
               
               Cow position:chr18:1571388-1571086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):44, 85

               
               
               Conread position:556-790
               
               
               Cow position:chr18:51594952-51594722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):43, 38

               
               
               Conread position:565-837
               
               
               Cow position:chr18:858678-858953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:565-862
               
               
               Cow position:chr18:5632124-5632418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 34

               
               
               Conread position:565-862
               
               
               Cow position:chr18:54130475-54130189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):34, 181

               
               
               Conread position:566-823
               
               
               Cow position:chr18:16997112-16997367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 79

               
               
               Conread position:566-862
               
               
               Cow position:chr18:49038321-49038607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):33, 25

               
               
               Conread position:566-862
               
               
               Cow position:chr18:49841138-49841436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):33, 100

               
               
               Conread position:567-862
               
               
               Cow position:chr18:3085654-3085354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):31, 94

               
               
               Conread position:568-859
               
               
               Cow position:chr18:22056018-22055712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):31, 86

               
               
               Conread position:570-864
               
               
               Cow position:chr18:33158818-33159098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:577-797
               
               
               Cow position:chr18:31711695-31711473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:578-853
               
               
               Cow position:chr18:34834362-34834640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):21, 108

               
               
               Conread position:578-863
               
               
               Cow position:chr18:4490024-4489747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:579-861
               
               
               Cow position:chr18:23630727-23630463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:585-773
               
               
               Cow position:chr18:44483893-44483708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 76

               
               
               Conread position:585-839
               
               
               Cow position:chr18:35367307-35367072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):169, 66

               
               
               Conread position:585-862
               
               
               Cow position:chr18:15517298-15517021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):14, 164

               
               
               Conread position:591-864
               
               
               Cow position:chr18:2146701-2146437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:598-862
               
               
               Cow position:chr18:43797061-43796806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:601-862
               
               
               Cow position:chr18:49015023-49015269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):45, 8

               
               
               Conread position:602-864
               
               
               Cow position:chr18:25598345-25598078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):44, 189

               
               
               Conread position:609-862
               
               
               Cow position:chr18:22569164-22568915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:609-862
               
               
               Cow position:chr18:35535247-35534997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):20, 48

               
               
               Conread position:609-864
               
               
               Cow position:chr18:8949890-8949644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:609-864
               
               
               Cow position:chr18:9040807-9040549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 51

               
               
               Conread position:611-862
               
               
               Cow position:chr18:32252264-32252012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):195, 44

               
               
               Conread position:616-816
               
               
               Cow position:chr18:9176811-9177003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):143, 80

               
               
               Conread position:624-861
               
               
               Cow position:chr18:14830926-14830706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:631-862
               
               
               Cow position:chr18:52251935-52251701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 123

               
               
               Conread position:633-789
               
               
               Cow position:chr18:23505257-23505412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:637-808
               
               
               Cow position:chr18:47548058-47547889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):12, 119

               
               
               Conread position:639-860
               
               
               Cow position:chr18:38601954-38601734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 161

               
               
               Conread position:640-862
               
               
               Cow position:chr18:6470028-6470245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:641-862
               
               
               Cow position:chr18:38937755-38937973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):118, 37

               
               
               Conread position:646-862
               
               
               Cow position:chr18:2773454-2773234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:646-862
               
               
               Cow position:chr18:2776957-2776737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:650-864
               
               
               Cow position:chr18:44917699-44917909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:651-861
               
               
               Cow position:chr18:52649404-52649187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:660-862
               
               
               Cow position:chr18:45558099-45558296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):51, 127

               
               
               Conread position:662-862
               
               
               Cow position:chr18:50632488-50632292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:664-862
               
               
               Cow position:chr18:51383439-51383245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):88, 11

               
               
               Conread position:667-860
               
               
               Cow position:chr18:11672002-11672204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):123, 62

               
               
               Conread position:680-862
               
               
               Cow position:chr18:34444761-34444584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:680-862
               
               
               Cow position:chr18:49603071-49602889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):72, 77

               
               
               Conread position:684-858
               
               
               Cow position:chr18:50004726-50004557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:701-863
               
               
               Cow position:chr18:306726-306562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:702-862
               
               
               Cow position:chr18:4152560-4152400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 82

               
               
               Conread position:703-862
               
               
               Cow position:chr18:49440836-49440996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:715-862
               
               
               Cow position:chr18:44548739-44548593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:520-856
               
               
               Cow position:chr19:25855058-25854709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 255

               
               
               Conread position:527-781
               
               
               Cow position:chr19:43441007-43441260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 54

               
               
               Conread position:527-860
               
               
               Cow position:chr19:43431482-43431149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 55

               
               
               Conread position:527-862
               
               
               Cow position:chr19:22043508-22043182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 8

               
               
               Conread position:528-862
               
               
               Cow position:chr19:13121430-13121111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:530-761
               
               
               Cow position:chr19:47109884-47110116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:530-774
               
               
               Cow position:chr19:990574-990326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 173

               
               
               Conread position:530-782
               
               
               Cow position:chr19:56382986-56383251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 60

               
               
               Conread position:530-793
               
               
               Cow position:chr19:15863196-15862943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):196, 115

               
               
               Conread position:530-860
               
               
               Cow position:chr19:52456912-52456581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):79, 69

               
               
               Conread position:530-861
               
               
               Cow position:chr19:35107374-35107690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):69, 26

               
               
               Conread position:530-862
               
               
               Cow position:chr19:10213515-10213843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 121

               
               
               Conread position:530-862
               
               
               Cow position:chr19:24760039-24759712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 184

               
               
               Conread position:530-862
               
               
               Cow position:chr19:29368246-29368570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:530-862
               
               
               Cow position:chr19:38392647-38392983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 184

               
               
               Conread position:530-864
               
               
               Cow position:chr19:8864591-8864920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 105

               
               
               Conread position:531-706
               
               
               Cow position:chr19:20693343-20693520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:143
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:531-753
               
               
               Cow position:chr19:52773332-52773105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 58

               
               
               Conread position:531-774
               
               
               Cow position:chr19:6049820-6049588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 90

               
               
               Conread position:531-803
               
               
               Cow position:chr19:14347858-14348128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):36, 161

               
               
               Conread position:533-692
               
               
               Cow position:chr19:36176596-36176755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:533-724
               
               
               Cow position:chr19:4092358-4092551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 32

               
               
               Conread position:533-729
               
               
               Cow position:chr19:37646987-37646793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:533-738
               
               
               Cow position:chr19:33823165-33823371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):36, 102

               
               
               Conread position:533-750
               
               
               Cow position:chr19:42240443-42240231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):66, 119

               
               
               Conread position:533-754
               
               
               Cow position:chr19:2734299-2734518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):66, 117

               
               
               Conread position:533-782
               
               
               Cow position:chr19:21363591-21363341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):33, 67

               
               
               Conread position:533-789
               
               
               Cow position:chr19:16694196-16693929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):15, 30

               
               
               Conread position:533-792
               
               
               Cow position:chr19:10242434-10242681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 87

               
               
               Conread position:533-794
               
               
               Cow position:chr19:33468872-33469129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):28, 109

               
               
               Conread position:533-797
               
               
               Cow position:chr19:36059784-36060047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):111, 12

               
               
               Conread position:533-801
               
               
               Cow position:chr19:25628285-25628016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):113, 65

               
               
               Conread position:533-801
               
               
               Cow position:chr19:34620182-34619916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):66, 204

               
               
               Conread position:533-802
               
               
               Cow position:chr19:9542045-9541787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):69, 107

               
               
               Conread position:533-802
               
               
               Cow position:chr19:14592902-14593171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):66, 254

               
               
               Conread position:533-804
               
               
               Cow position:chr19:8375457-8375182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):66, 183

               
               
               Conread position:533-804
               
               
               Cow position:chr19:22799231-22798960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):27, 94

               
               
               Conread position:533-808
               
               
               Cow position:chr19:7404532-7404253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):35, 224

               
               
               Conread position:533-808
               
               
               Cow position:chr19:17795745-17796016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 165

               
               
               Conread position:533-823
               
               
               Cow position:chr19:25807454-25807172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 181

               
               
               Conread position:533-837
               
               
               Cow position:chr19:23786041-23786326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):66, 121

               
               
               Conread position:533-838
               
               
               Cow position:chr19:7053484-7053192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):111, 50

               
               
               Conread position:533-845
               
               
               Cow position:chr19:10545857-10545548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):66, 35

               
               
               Conread position:533-848
               
               
               Cow position:chr19:1664342-1664022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):105, 44

               
               
               Conread position:533-849
               
               
               Cow position:chr19:27612320-27612016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):105, 13

               
               
               Conread position:533-852
               
               
               Cow position:chr19:32754370-32754694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 218

               
               
               Conread position:533-854
               
               
               Cow position:chr19:24062140-24062441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:533-854
               
               
               Cow position:chr19:34287873-34288180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:533-854
               
               
               Cow position:chr19:39057092-39057415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 91

               
               
               Conread position:533-854
               
               
               Cow position:chr19:50562523-50562850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):69, 193

               
               
               Conread position:533-858
               
               
               Cow position:chr19:34955845-34955542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 104

               
               
               Conread position:533-859
               
               
               Cow position:chr19:22765469-22765784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):66, 103

               
               
               Conread position:533-860
               
               
               Cow position:chr19:20661564-20661239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 161

               
               
               Conread position:533-861
               
               
               Cow position:chr19:3812163-3811848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:533-861
               
               
               Cow position:chr19:26057697-26057377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):154, 59

               
               
               Conread position:533-861
               
               
               Cow position:chr19:54942821-54943140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):51, 40

               
               
               Conread position:533-862
               
               
               Cow position:chr19:268202-268523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):65, 99

               
               
               Conread position:533-862
               
               
               Cow position:chr19:1968456-1968146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):69, 46

               
               
               Conread position:533-862
               
               
               Cow position:chr19:10080917-10081263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):25, 67

               
               
               Conread position:533-862
               
               
               Cow position:chr19:10186350-10186682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):66, 58

               
               
               Conread position:533-862
               
               
               Cow position:chr19:13129721-13130039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 182

               
               
               Conread position:533-862
               
               
               Cow position:chr19:14253486-14253810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):66, 96

               
               
               Conread position:533-862
               
               
               Cow position:chr19:15068154-15067834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):66, 76

               
               
               Conread position:533-862
               
               
               Cow position:chr19:15887474-15887141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):66, 57

               
               
               Conread position:533-862
               
               
               Cow position:chr19:16096702-16096378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):221, 59

               
               
               Conread position:533-862
               
               
               Cow position:chr19:20935602-20935928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):66, 118

               
               
               Conread position:533-862
               
               
               Cow position:chr19:25526133-25526454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):66, 27

               
               
               Conread position:533-862
               
               
               Cow position:chr19:25655386-25655069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):65, 231

               
               
               Conread position:533-862
               
               
               Cow position:chr19:25727030-25726710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):92, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr19:26976211-26975896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr19:29625754-29626075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr19:33033593-33033269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):69, 121

               
               
               Conread position:533-862
               
               
               Cow position:chr19:33903574-33903251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 117

               
               
               Conread position:533-862
               
               
               Cow position:chr19:38500016-38500331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):66, 16

               
               
               Conread position:533-862
               
               
               Cow position:chr19:39751333-39751646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):187, 60

               
               
               Conread position:533-862
               
               
               Cow position:chr19:42694840-42695164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):66, 83

               
               
               Conread position:533-862
               
               
               Cow position:chr19:47453284-47453606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr19:47671598-47671909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):66, 105

               
               
               Conread position:533-862
               
               
               Cow position:chr19:48960243-48960568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 223

               
               
               Conread position:533-862
               
               
               Cow position:chr19:55952305-55951989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):66, 46

               
               
               Conread position:533-864
               
               
               Cow position:chr19:5185397-5185081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 118

               
               
               Conread position:533-864
               
               
               Cow position:chr19:15852796-15853103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-864
               
               
               Cow position:chr19:39576722-39576397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 252

               
               
               Conread position:533-864
               
               
               Cow position:chr19:44839064-44838763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-864
               
               
               Cow position:chr19:55590085-55590412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):99, 28

               
               
               Conread position:534-695
               
               
               Cow position:chr19:38723997-38723836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 100

               
               
               Conread position:534-773
               
               
               Cow position:chr19:35742011-35742249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):65, 22

               
               
               Conread position:534-782
               
               
               Cow position:chr19:42903857-42904105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):65, 196

               
               
               Conread position:534-787
               
               
               Cow position:chr19:5656256-5656023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):68, 22

               
               
               Conread position:534-803
               
               
               Cow position:chr19:19919612-19919347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):65, 120

               
               
               Conread position:534-805
               
               
               Cow position:chr19:31846695-31846434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 63

               
               
               Conread position:534-829
               
               
               Cow position:chr19:47859466-47859169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 100

               
               
               Conread position:534-845
               
               
               Cow position:chr19:30232578-30232871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):256, 64

               
               
               Conread position:534-848
               
               
               Cow position:chr19:26753883-26754202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):23, 69

               
               
               Conread position:534-858
               
               
               Cow position:chr19:3216867-3217175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):65, 47

               
               
               Conread position:534-858
               
               
               Cow position:chr19:7637386-7637064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):68, 12

               
               
               Conread position:534-859
               
               
               Cow position:chr19:41946035-41946354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 105

               
               
               Conread position:534-860
               
               
               Cow position:chr19:36097072-36097397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):24, 112

               
               
               Conread position:534-861
               
               
               Cow position:chr19:18129409-18129734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 66

               
               
               Conread position:534-861
               
               
               Cow position:chr19:46094790-46094453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:534-862
               
               
               Cow position:chr19:11376556-11376246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):65, 167

               
               
               Conread position:534-862
               
               
               Cow position:chr19:21198986-21199325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 117

               
               
               Conread position:534-862
               
               
               Cow position:chr19:21378620-21378291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 76

               
               
               Conread position:534-862
               
               
               Cow position:chr19:24137111-24137440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):65, 98

               
               
               Conread position:534-862
               
               
               Cow position:chr19:35762403-35762080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 84

               
               
               Conread position:534-862
               
               
               Cow position:chr19:42563985-42564322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 226

               
               
               Conread position:534-862
               
               
               Cow position:chr19:46454703-46455016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:534-862
               
               
               Cow position:chr19:52185920-52185582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:534-863
               
               
               Cow position:chr19:41584824-41585148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:534-864
               
               
               Cow position:chr19:43702856-43702510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):112, 51

               
               
               Conread position:534-864
               
               
               Cow position:chr19:50161847-50162172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):177, 27

               
               
               Conread position:535-788
               
               
               Cow position:chr19:24358379-24358141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:535-801
               
               
               Cow position:chr19:18786470-18786209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):68, 44

               
               
               Conread position:535-808
               
               
               Cow position:chr19:34001059-34001328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:535-827
               
               
               Cow position:chr19:16567008-16567292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):266, 41

               
               
               Conread position:535-854
               
               
               Cow position:chr19:54121129-54121432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:535-861
               
               
               Cow position:chr19:12601657-12601976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 115

               
               
               Conread position:535-861
               
               
               Cow position:chr19:36221777-36222107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 115

               
               
               Conread position:535-862
               
               
               Cow position:chr19:7668553-7668870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 18

               
               
               Conread position:535-862
               
               
               Cow position:chr19:41497780-41497467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 91

               
               
               Conread position:535-862
               
               
               Cow position:chr19:55688849-55688519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):64, 74

               
               
               Conread position:535-864
               
               
               Cow position:chr19:20622503-20622834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):24, 71

               
               
               Conread position:536-674
               
               
               Cow position:chr19:30927671-30927808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:536-761
               
               
               Cow position:chr19:17479113-17478886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):98, 87

               
               
               Conread position:536-862
               
               
               Cow position:chr19:52158386-52158717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):61, 206

               
               
               Conread position:539-797
               
               
               Cow position:chr19:4503071-4503329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):60, 85

               
               
               Conread position:539-837
               
               
               Cow position:chr19:40051536-40051237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 74

               
               
               Conread position:539-844
               
               
               Cow position:chr19:15719764-15719468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 81

               
               
               Conread position:539-861
               
               
               Cow position:chr19:3621285-3621603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 111

               
               
               Conread position:539-862
               
               
               Cow position:chr19:17972402-17972093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:539-862
               
               
               Cow position:chr19:24144875-24145196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):63, 99

               
               
               Conread position:540-809
               
               
               Cow position:chr19:39485174-39485440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):56, 100

               
               
               Conread position:540-861
               
               
               Cow position:chr19:6334012-6334305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:540-862
               
               
               Cow position:chr19:15092272-15091970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):112, 53

               
               
               Conread position:541-808
               
               
               Cow position:chr19:8033602-8033869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):61, 233

               
               
               Conread position:541-809
               
               
               Cow position:chr19:4800598-4800866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):26, 112

               
               
               Conread position:541-862
               
               
               Cow position:chr19:7158868-7158540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):24, 115

               
               
               Conread position:541-862
               
               
               Cow position:chr19:39254597-39254263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 107

               
               
               Conread position:543-856
               
               
               Cow position:chr19:33912771-33912456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 114

               
               
               Conread position:543-861
               
               
               Cow position:chr19:52750902-52750585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):14, 108

               
               
               Conread position:543-862
               
               
               Cow position:chr19:36138715-36139029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 103

               
               
               Conread position:544-804
               
               
               Cow position:chr19:8332155-8332419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):54, 61

               
               
               Conread position:544-823
               
               
               Cow position:chr19:52734977-52735244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:545-860
               
               
               Cow position:chr19:39622942-39622611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 186

               
               
               Conread position:546-862
               
               
               Cow position:chr19:16621491-16621183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 102

               
               
               Conread position:551-862
               
               
               Cow position:chr19:34758132-34757817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):37, 26

               
               
               Conread position:554-862
               
               
               Cow position:chr19:42517388-42517079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:555-861
               
               
               Cow position:chr19:23378557-23378851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):44, 82

               
               
               Conread position:563-863
               
               
               Cow position:chr19:24005545-24005829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:564-859
               
               
               Cow position:chr19:23394665-23394957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:566-860
               
               
               Cow position:chr19:14632154-14631868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:566-862
               
               
               Cow position:chr19:6278064-6278363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:566-862
               
               
               Cow position:chr19:11110851-11110554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):34, 86

               
               
               Conread position:567-753
               
               
               Cow position:chr19:13757131-13757319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 83

               
               
               Conread position:567-862
               
               
               Cow position:chr19:43189810-43190104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):187, 35

               
               
               Conread position:568-862
               
               
               Cow position:chr19:729861-729573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):31, 138

               
               
               Conread position:569-837
               
               
               Cow position:chr19:47986740-47987007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):30, 189

               
               
               Conread position:574-862
               
               
               Cow position:chr19:19549659-19549380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):28, 164

               
               
               Conread position:576-831
               
               
               Cow position:chr19:23832700-23832444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):98, 11

               
               
               Conread position:578-864
               
               
               Cow position:chr19:43413673-43413956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):74, 21

               
               
               Conread position:584-862
               
               
               Cow position:chr19:48744368-48744094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:585-774
               
               
               Cow position:chr19:11212499-11212310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 13

               
               
               Conread position:585-864
               
               
               Cow position:chr19:41024124-41024398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:586-826
               
               
               Cow position:chr19:16105181-16104944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):13, 191

               
               
               Conread position:589-862
               
               
               Cow position:chr19:55583432-55583711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):10, 51

               
               
               Conread position:590-862
               
               
               Cow position:chr19:40127261-40126990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):9, 32

               
               
               Conread position:591-862
               
               
               Cow position:chr19:49221710-49221447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:598-861
               
               
               Cow position:chr19:12052933-12052673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):45, 23

               
               
               Conread position:598-861
               
               
               Cow position:chr19:12067658-12067918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):45, 23

               
               
               Conread position:598-862
               
               
               Cow position:chr19:33575437-33575694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):100, 51

               
               
               Conread position:601-861
               
               
               Cow position:chr19:25763030-25763279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:601-862
               
               
               Cow position:chr19:11646489-11646739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:601-862
               
               
               Cow position:chr19:34420330-34420584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:603-860
               
               
               Cow position:chr19:7148146-7147883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:603-862
               
               
               Cow position:chr19:13488586-13488331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):31, 194

               
               
               Conread position:604-862
               
               
               Cow position:chr19:23889561-23889311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:605-862
               
               
               Cow position:chr19:47185161-47184905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):136, 44

               
               
               Conread position:609-845
               
               
               Cow position:chr19:28447365-28447597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:609-861
               
               
               Cow position:chr19:3498028-3497773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:609-862
               
               
               Cow position:chr19:11560118-11559860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:609-862
               
               
               Cow position:chr19:42768174-42767928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):26, 43

               
               
               Conread position:611-861
               
               
               Cow position:chr19:33913451-33913704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:615-862
               
               
               Cow position:chr19:10238667-10238911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:617-862
               
               
               Cow position:chr19:33987997-33988244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):21, 118

               
               
               Conread position:627-859
               
               
               Cow position:chr19:23087927-23088153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:641-862
               
               
               Cow position:chr19:23756787-23756576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:648-861
               
               
               Cow position:chr19:28810355-28810142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):88, 163

               
               
               Conread position:651-862
               
               
               Cow position:chr19:38732104-38732313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:651-862
               
               
               Cow position:chr19:40002391-40002182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):93, 75

               
               
               Conread position:655-862
               
               
               Cow position:chr19:34654641-34654435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:658-862
               
               
               Cow position:chr19:52728585-52728786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:661-862
               
               
               Cow position:chr19:17354833-17355034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):54, 59

               
               
               Conread position:661-864
               
               
               Cow position:chr19:37467086-37466884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):141, 115

               
               
               Conread position:662-862
               
               
               Cow position:chr19:10538575-10538383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 89

               
               
               Conread position:662-862
               
               
               Cow position:chr19:25835351-25835162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:662-862
               
               
               Cow position:chr19:44572059-44572263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):142, 44

               
               
               Conread position:662-864
               
               
               Cow position:chr19:34608221-34608022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:664-861
               
               
               Cow position:chr19:24692986-24693178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:667-862
               
               
               Cow position:chr19:25832218-25832025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):174, 109

               
               
               Conread position:667-862
               
               
               Cow position:chr19:39981717-39981914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 77

               
               
               Conread position:683-862
               
               
               Cow position:chr19:19916423-19916248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:687-862
               
               
               Cow position:chr19:5261334-5261515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 69

               
               
               Conread position:688-859
               
               
               Cow position:chr19:6854923-6855089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:694-862
               
               
               Cow position:chr19:33233591-33233757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:700-861
               
               
               Cow position:chr19:46822723-46822883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:701-864
               
               
               Cow position:chr19:7864072-7864232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:527-741
               
               
               Cow position:chr20:7210934-7211148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):7, 132

               
               
               Conread position:527-787
               
               
               Cow position:chr20:6096597-6096340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 118

               
               
               Conread position:527-804
               
               
               Cow position:chr20:17845857-17846132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:527-862
               
               
               Cow position:chr20:3141477-3141804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 54

               
               
               Conread position:528-725
               
               
               Cow position:chr20:23505728-23505921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 18

               
               
               Conread position:528-836
               
               
               Cow position:chr20:5998771-5998454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):71, 52

               
               
               Conread position:529-861
               
               
               Cow position:chr20:28594181-28594521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):66, 199

               
               
               Conread position:530-794
               
               
               Cow position:chr20:39517906-39518166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 104

               
               
               Conread position:530-803
               
               
               Cow position:chr20:581022-580749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):72, 36

               
               
               Conread position:530-804
               
               
               Cow position:chr20:38578858-38578594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:530-861
               
               
               Cow position:chr20:11611580-11611909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:530-861
               
               
               Cow position:chr20:22064970-22065289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):24, 55

               
               
               Conread position:530-862
               
               
               Cow position:chr20:39325288-39325621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):31, 48

               
               
               Conread position:530-862
               
               
               Cow position:chr20:39398385-39398711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):69, 110

               
               
               Conread position:533-657
               
               
               Cow position:chr20:18837254-18837130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:533-708
               
               
               Cow position:chr20:34901471-34901648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):66, 74

               
               
               Conread position:533-736
               
               
               Cow position:chr20:24000897-24000693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):32, 121

               
               
               Conread position:533-754
               
               
               Cow position:chr20:21928806-21929027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 121

               
               
               Conread position:533-774
               
               
               Cow position:chr20:39267057-39266816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):58, 126

               
               
               Conread position:533-784
               
               
               Cow position:chr20:28955800-28955548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):24, 69

               
               
               Conread position:533-788
               
               
               Cow position:chr20:6602942-6603197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):66, 145

               
               
               Conread position:533-788
               
               
               Cow position:chr20:36207708-36207970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:533-794
               
               
               Cow position:chr20:5636386-5636643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:533-794
               
               
               Cow position:chr20:11482233-11481975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 120

               
               
               Conread position:533-794
               
               
               Cow position:chr20:38768554-38768301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):66, 110

               
               
               Conread position:533-800
               
               
               Cow position:chr20:9412392-9412654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):69, 55

               
               
               Conread position:533-808
               
               
               Cow position:chr20:7362871-7363135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:533-813
               
               
               Cow position:chr20:11550268-11550546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):63, 194

               
               
               Conread position:533-835
               
               
               Cow position:chr20:16935397-16935114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):66, 91

               
               
               Conread position:533-844
               
               
               Cow position:chr20:7442224-7441928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:533-845
               
               
               Cow position:chr20:4205869-4206172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):12, 225

               
               
               Conread position:533-853
               
               
               Cow position:chr20:8578150-8578471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 119

               
               
               Conread position:533-853
               
               
               Cow position:chr20:23792513-23792814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 48

               
               
               Conread position:533-858
               
               
               Cow position:chr20:9433489-9433807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 41

               
               
               Conread position:533-859
               
               
               Cow position:chr20:2819445-2819774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:533-860
               
               
               Cow position:chr20:18379284-18379604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 60

               
               
               Conread position:533-861
               
               
               Cow position:chr20:7438950-7438629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):66, 12

               
               
               Conread position:533-861
               
               
               Cow position:chr20:13269529-13269842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):64, 77

               
               
               Conread position:533-861
               
               
               Cow position:chr20:15118178-15118506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):25, 125

               
               
               Conread position:533-861
               
               
               Cow position:chr20:24069706-24070030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 244

               
               
               Conread position:533-861
               
               
               Cow position:chr20:26996436-26996762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 91

               
               
               Conread position:533-862
               
               
               Cow position:chr20:2298875-2298566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):66, 92

               
               
               Conread position:533-862
               
               
               Cow position:chr20:3254955-3255263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:533-862
               
               
               Cow position:chr20:3599488-3599173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):234, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr20:4945347-4945021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):27, 91

               
               
               Conread position:533-862
               
               
               Cow position:chr20:7426285-7425969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 27

               
               
               Conread position:533-862
               
               
               Cow position:chr20:8546968-8547289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 58

               
               
               Conread position:533-862
               
               
               Cow position:chr20:10188177-10188504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:533-862
               
               
               Cow position:chr20:10200249-10200578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):30, 59

               
               
               Conread position:533-862
               
               
               Cow position:chr20:12420716-12420390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:533-862
               
               
               Cow position:chr20:14433526-14433191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):35, 249

               
               
               Conread position:533-862
               
               
               Cow position:chr20:14980609-14980278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):66, 30

               
               
               Conread position:533-862
               
               
               Cow position:chr20:20983900-20984226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 33

               
               
               Conread position:533-862
               
               
               Cow position:chr20:22235217-22235528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):93, 64

               
               
               Conread position:533-862
               
               
               Cow position:chr20:28982601-28982927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 179

               
               
               Conread position:533-862
               
               
               Cow position:chr20:32084179-32083870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):69, 184

               
               
               Conread position:533-862
               
               
               Cow position:chr20:32847258-32847571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr20:34098056-34097719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 114

               
               
               Conread position:533-864
               
               
               Cow position:chr20:14879692-14880017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):66, 27

               
               
               Conread position:533-864
               
               
               Cow position:chr20:31740318-31739986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):66, 35

               
               
               Conread position:533-864
               
               
               Cow position:chr20:38817908-38818220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:534-744
               
               
               Cow position:chr20:23103123-23103335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:534-750
               
               
               Cow position:chr20:19459758-19459547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:534-753
               
               
               Cow position:chr20:3607053-3606840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:534-782
               
               
               Cow position:chr20:19363460-19363213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):65, 75

               
               
               Conread position:534-790
               
               
               Cow position:chr20:6258157-6257899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):157, 65

               
               
               Conread position:534-801
               
               
               Cow position:chr20:11542380-11542114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):65, 133

               
               
               Conread position:534-803
               
               
               Cow position:chr20:19751211-19751476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 112

               
               
               Conread position:534-808
               
               
               Cow position:chr20:28067523-28067250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):66, 78

               
               
               Conread position:534-809
               
               
               Cow position:chr20:22978224-22978504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):48, 119

               
               
               Conread position:534-858
               
               
               Cow position:chr20:39417996-39417677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):25, 101

               
               
               Conread position:534-862
               
               
               Cow position:chr20:4334620-4334309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):65, 9

               
               
               Conread position:534-862
               
               
               Cow position:chr20:5950740-5950411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 67

               
               
               Conread position:534-862
               
               
               Cow position:chr20:7738323-7738005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 98

               
               
               Conread position:534-862
               
               
               Cow position:chr20:8556367-8556041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):65, 100

               
               
               Conread position:534-862
               
               
               Cow position:chr20:14572456-14572148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):65, 84

               
               
               Conread position:534-862
               
               
               Cow position:chr20:23846766-23846436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 254

               
               
               Conread position:534-862
               
               
               Cow position:chr20:29844953-29845284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):33, 119

               
               
               Conread position:534-864
               
               
               Cow position:chr20:8307920-8308235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):49, 108

               
               
               Conread position:534-864
               
               
               Cow position:chr20:28605107-28605437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 121

               
               
               Conread position:534-864
               
               
               Cow position:chr20:35710075-35710390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):62, 75

               
               
               Conread position:535-793
               
               
               Cow position:chr20:40511853-40511595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):64, 30

               
               
               Conread position:535-828
               
               
               Cow position:chr20:22484764-22485057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):32, 108

               
               
               Conread position:535-837
               
               
               Cow position:chr20:20203120-20203418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):64, 117

               
               
               Conread position:535-859
               
               
               Cow position:chr20:7659314-7658999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):67, 99

               
               
               Conread position:535-861
               
               
               Cow position:chr20:23286419-23286103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):237, 60

               
               
               Conread position:535-862
               
               
               Cow position:chr20:8703005-8702701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):64, 40

               
               
               Conread position:535-862
               
               
               Cow position:chr20:28441234-28441548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):68, 53

               
               
               Conread position:535-863
               
               
               Cow position:chr20:14806790-14807113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 115

               
               
               Conread position:535-864
               
               
               Cow position:chr20:12996105-12995762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):64, 26

               
               
               Conread position:535-864
               
               
               Cow position:chr20:25162224-25161900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):64, 272

               
               
               Conread position:536-852
               
               
               Cow position:chr20:32523365-32523682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):30, 120

               
               
               Conread position:536-861
               
               
               Cow position:chr20:23541252-23540943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):63, 119

               
               
               Conread position:536-862
               
               
               Cow position:chr20:6240616-6240291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):63, 110

               
               
               Conread position:537-787
               
               
               Cow position:chr20:33363423-33363672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):106, 67

               
               
               Conread position:539-707
               
               
               Cow position:chr20:39019603-39019771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):60, 14

               
               
               Conread position:539-793
               
               
               Cow position:chr20:18320883-18320634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):60, 121

               
               
               Conread position:539-809
               
               
               Cow position:chr20:9537042-9537307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):26, 174

               
               
               Conread position:539-835
               
               
               Cow position:chr20:32463613-32463323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):60, 95

               
               
               Conread position:539-861
               
               
               Cow position:chr20:27407966-27407667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):61, 95

               
               
               Conread position:539-862
               
               
               Cow position:chr20:10208714-10209036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):67, 222

               
               
               Conread position:539-862
               
               
               Cow position:chr20:22265337-22265038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):60, 111

               
               
               Conread position:540-861
               
               
               Cow position:chr20:15548987-15548664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):62, 35

               
               
               Conread position:541-862
               
               
               Cow position:chr20:40177156-40177473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):58, 84

               
               
               Conread position:542-862
               
               
               Cow position:chr20:25009726-25009404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):60, 22

               
               
               Conread position:542-862
               
               
               Cow position:chr20:38873097-38872770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 140

               
               
               Conread position:543-844
               
               
               Cow position:chr20:31746716-31746425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):52, 134

               
               
               Conread position:543-845
               
               
               Cow position:chr20:32866275-32865987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):56, 41

               
               
               Conread position:544-862
               
               
               Cow position:chr20:12582037-12581727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 31

               
               
               Conread position:546-858
               
               
               Cow position:chr20:398388-398087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:554-794
               
               
               Cow position:chr20:21204283-21204516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 75

               
               
               Conread position:555-860
               
               
               Cow position:chr20:16548351-16548045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 8

               
               
               Conread position:565-862
               
               
               Cow position:chr20:7624312-7624030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:566-860
               
               
               Cow position:chr20:33067428-33067132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):36, 16

               
               
               Conread position:566-861
               
               
               Cow position:chr20:4755897-4755606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 81

               
               
               Conread position:566-864
               
               
               Cow position:chr20:38089847-38090147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:572-828
               
               
               Cow position:chr20:17100302-17100553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):27, 77

               
               
               Conread position:572-845
               
               
               Cow position:chr20:16818357-16818633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 83

               
               
               Conread position:577-793
               
               
               Cow position:chr20:10772150-10772366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):26, 150

               
               
               Conread position:577-861
               
               
               Cow position:chr20:38514728-38515017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 54

               
               
               Conread position:585-862
               
               
               Cow position:chr20:39016922-39016640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 67

               
               
               Conread position:586-862
               
               
               Cow position:chr20:20898635-20898360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 40

               
               
               Conread position:587-864
               
               
               Cow position:chr20:6248644-6248368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):185, 7

               
               
               Conread position:590-862
               
               
               Cow position:chr20:11751608-11751883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):9, 129

               
               
               Conread position:591-808
               
               
               Cow position:chr20:22030280-22030491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):11, 162

               
               
               Conread position:591-862
               
               
               Cow position:chr20:21428120-21428387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):8, 59

               
               
               Conread position:601-808
               
               
               Cow position:chr20:21815532-21815735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 20

               
               
               Conread position:606-862
               
               
               Cow position:chr20:12126328-12126072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):197, 44

               
               
               Conread position:614-767
               
               
               Cow position:chr20:1009721-1009571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:624-864
               
               
               Cow position:chr20:5702717-5702953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):196, 25

               
               
               Conread position:640-861
               
               
               Cow position:chr20:3148692-3148909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:642-845
               
               
               Cow position:chr20:15529870-15530075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 83

               
               
               Conread position:647-846
               
               
               Cow position:chr20:15766126-15766325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:648-862
               
               
               Cow position:chr20:33623536-33623330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):193, 98

               
               
               Conread position:651-862
               
               
               Cow position:chr20:20158155-20158360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:662-858
               
               
               Cow position:chr20:36312478-36312286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):179, 100

               
               
               Conread position:662-859
               
               
               Cow position:chr20:3564190-3564379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:664-862
               
               
               Cow position:chr20:24097033-24097224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:667-862
               
               
               Cow position:chr20:19636141-19635949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):174, 112

               
               
               Conread position:670-862
               
               
               Cow position:chr20:4892081-4891889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:671-848
               
               
               Cow position:chr20:630564-630738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:673-864
               
               
               Cow position:chr20:26041057-26040866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:677-859
               
               
               Cow position:chr20:20590256-20590078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:680-861
               
               
               Cow position:chr20:19834782-19834603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:710-861
               
               
               Cow position:chr20:12033546-12033398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 78

               
               
               Conread position:519-839
               
               
               Cow position:chr21:16569810-16570122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):80, 136

               
               
               Conread position:527-764
               
               
               Cow position:chr21:42540301-42540069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 68

               
               
               Conread position:527-807
               
               
               Cow position:chr21:28924031-28924306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):36, 55

               
               
               Conread position:527-837
               
               
               Cow position:chr21:42007549-42007234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):40, 152

               
               
               Conread position:527-862
               
               
               Cow position:chr21:32559440-32559121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):300, 15

               
               
               Conread position:530-690
               
               
               Cow position:chr21:12960979-12960819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):69, 87

               
               
               Conread position:530-727
               
               
               Cow position:chr21:23192594-23192393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):69, 110

               
               
               Conread position:530-750
               
               
               Cow position:chr21:724966-724746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):69, 110

               
               
               Conread position:530-778
               
               
               Cow position:chr21:18828386-18828135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):69, 39

               
               
               Conread position:530-786
               
               
               Cow position:chr21:35354453-35354708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):77, 123

               
               
               Conread position:530-823
               
               
               Cow position:chr21:12617057-12617378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:530-828
               
               
               Cow position:chr21:9990436-9990727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:530-843
               
               
               Cow position:chr21:18800609-18800296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):69, 77

               
               
               Conread position:530-858
               
               
               Cow position:chr21:5898479-5898162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):69, 94

               
               
               Conread position:530-859
               
               
               Cow position:chr21:42841678-42841338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):29, 49

               
               
               Conread position:530-861
               
               
               Cow position:chr21:10561664-10561336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):69, 132

               
               
               Conread position:530-862
               
               
               Cow position:chr21:29978836-29978515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):69, 45

               
               
               Conread position:530-862
               
               
               Cow position:chr21:37299389-37299710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):126, 28

               
               
               Conread position:531-745
               
               
               Cow position:chr21:10601453-10601241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):68, 51

               
               
               Conread position:531-754
               
               
               Cow position:chr21:41878392-41878612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):68, 115

               
               
               Conread position:531-859
               
               
               Cow position:chr21:47719378-47719057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):104, 62

               
               
               Conread position:533-641
               
               
               Cow position:chr21:21216218-21216111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):66, 30

               
               
               Conread position:533-644
               
               
               Cow position:chr21:14515774-14515886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-688
               
               
               Cow position:chr21:35569456-35569307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):71, 40

               
               
               Conread position:533-711
               
               
               Cow position:chr21:4795150-4795326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):73, 32

               
               
               Conread position:533-727
               
               
               Cow position:chr21:23150098-23149905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):65, 48

               
               
               Conread position:533-741
               
               
               Cow position:chr21:13488445-13488657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-747
               
               
               Cow position:chr21:33997303-33997091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:533-750
               
               
               Cow position:chr21:44515186-44515403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 57

               
               
               Conread position:533-753
               
               
               Cow position:chr21:18845092-18844870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):66, 117

               
               
               Conread position:533-754
               
               
               Cow position:chr21:34391052-34390832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:533-762
               
               
               Cow position:chr21:16187885-16187656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):66, 78

               
               
               Conread position:533-779
               
               
               Cow position:chr21:9940271-9940022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):48, 195

               
               
               Conread position:533-792
               
               
               Cow position:chr21:12723083-12723332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):66, 50

               
               
               Conread position:533-794
               
               
               Cow position:chr21:395793-396048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 116

               
               
               Conread position:533-798
               
               
               Cow position:chr21:22465120-22465375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):71, 81

               
               
               Conread position:533-798
               
               
               Cow position:chr21:45262889-45262623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 67

               
               
               Conread position:533-808
               
               
               Cow position:chr21:33350669-33350936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):184, 64

               
               
               Conread position:533-808
               
               
               Cow position:chr21:36297413-36297689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):72, 255

               
               
               Conread position:533-808
               
               
               Cow position:chr21:39401517-39401785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):66, 129

               
               
               Conread position:533-809
               
               
               Cow position:chr21:7581983-7581709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):69, 120

               
               
               Conread position:533-809
               
               
               Cow position:chr21:29484902-29485174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 117

               
               
               Conread position:533-809
               
               
               Cow position:chr21:30250267-30250008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:533-809
               
               
               Cow position:chr21:36795523-36795799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):66, 242

               
               
               Conread position:533-809
               
               
               Cow position:chr21:42384432-42384705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):30, 117

               
               
               Conread position:533-823
               
               
               Cow position:chr21:13365261-13365554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):66, 170

               
               
               Conread position:533-823
               
               
               Cow position:chr21:23322157-23321868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 69

               
               
               Conread position:533-845
               
               
               Cow position:chr21:29214228-29213922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 39

               
               
               Conread position:533-850
               
               
               Cow position:chr21:25127524-25127845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):32, 68

               
               
               Conread position:533-861
               
               
               Cow position:chr21:3361088-3360767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:533-861
               
               
               Cow position:chr21:3585440-3585115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):234, 57

               
               
               Conread position:533-861
               
               
               Cow position:chr21:12462047-12461720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:533-861
               
               
               Cow position:chr21:13048274-13047941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 234

               
               
               Conread position:533-861
               
               
               Cow position:chr21:22860922-22861241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 203

               
               
               Conread position:533-861
               
               
               Cow position:chr21:32297584-32297259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):264, 104

               
               
               Conread position:533-861
               
               
               Cow position:chr21:37706492-37706163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 42

               
               
               Conread position:533-862
               
               
               Cow position:chr21:802372-802073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):308, 52

               
               
               Conread position:533-862
               
               
               Cow position:chr21:957595-957919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:533-862
               
               
               Cow position:chr21:6051430-6051755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):69, 85

               
               
               Conread position:533-862
               
               
               Cow position:chr21:6833971-6834300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):37, 119

               
               
               Conread position:533-862
               
               
               Cow position:chr21:7673049-7673363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:533-862
               
               
               Cow position:chr21:8351380-8351044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):69, 39

               
               
               Conread position:533-862
               
               
               Cow position:chr21:10004962-10004633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):66, 15

               
               
               Conread position:533-862
               
               
               Cow position:chr21:10263956-10264285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):239, 100

               
               
               Conread position:533-862
               
               
               Cow position:chr21:11740193-11739869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:533-862
               
               
               Cow position:chr21:14452159-14452483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):66, 91

               
               
               Conread position:533-862
               
               
               Cow position:chr21:16152354-16152690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):26, 230

               
               
               Conread position:533-862
               
               
               Cow position:chr21:17183843-17184168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:533-862
               
               
               Cow position:chr21:20152870-20153207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):31, 229

               
               
               Conread position:533-862
               
               
               Cow position:chr21:20160606-20160928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:533-862
               
               
               Cow position:chr21:20260398-20260047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 299

               
               
               Conread position:533-862
               
               
               Cow position:chr21:22210321-22209993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):30, 39

               
               
               Conread position:533-862
               
               
               Cow position:chr21:23586803-23587122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):66, 231

               
               
               Conread position:533-862
               
               
               Cow position:chr21:27569237-27568909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):257, 31

               
               
               Conread position:533-862
               
               
               Cow position:chr21:28244392-28244717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 153

               
               
               Conread position:533-862
               
               
               Cow position:chr21:29002235-29001896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):69, 226

               
               
               Conread position:533-862
               
               
               Cow position:chr21:29069406-29069073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr21:30222267-30222592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 58

               
               
               Conread position:533-862
               
               
               Cow position:chr21:30231775-30231446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 76

               
               
               Conread position:533-862
               
               
               Cow position:chr21:34654000-34654320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:533-862
               
               
               Cow position:chr21:37479882-37480214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr21:45906698-45906371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):65, 101

               
               
               Conread position:533-862
               
               
               Cow position:chr21:47714084-47713757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 11

               
               
               Conread position:533-862
               
               
               Cow position:chr21:48234236-48233926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 15

               
               
               Conread position:533-864
               
               
               Cow position:chr21:13840245-13840580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):32, 205

               
               
               Conread position:533-864
               
               
               Cow position:chr21:42135697-42135367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 275

               
               
               Conread position:534-741
               
               
               Cow position:chr21:46552182-46551973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:534-745
               
               
               Cow position:chr21:20192821-20193028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:534-768
               
               
               Cow position:chr21:19363539-19363303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 225

               
               
               Conread position:534-782
               
               
               Cow position:chr21:38121025-38121272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:534-788
               
               
               Cow position:chr21:28190956-28191209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):64, 57

               
               
               Conread position:534-788
               
               
               Cow position:chr21:47764191-47763941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):65, 109

               
               
               Conread position:534-807
               
               
               Cow position:chr21:4399721-4399997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 129

               
               
               Conread position:534-809
               
               
               Cow position:chr21:1591476-1591755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):65, 111

               
               
               Conread position:534-809
               
               
               Cow position:chr21:10633717-10633447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):23, 186

               
               
               Conread position:534-809
               
               
               Cow position:chr21:26244844-26245110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:534-846
               
               
               Cow position:chr21:643252-643557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:534-854
               
               
               Cow position:chr21:17875268-17874948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):24, 132

               
               
               Conread position:534-854
               
               
               Cow position:chr21:19196239-19195919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):24, 115

               
               
               Conread position:534-859
               
               
               Cow position:chr21:41621048-41621375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):68, 116

               
               
               Conread position:534-862
               
               
               Cow position:chr21:11645046-11644716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 253

               
               
               Conread position:534-862
               
               
               Cow position:chr21:18289588-18289927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 41

               
               
               Conread position:534-862
               
               
               Cow position:chr21:20262409-20262097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 54

               
               
               Conread position:534-862
               
               
               Cow position:chr21:30592380-30592064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):65, 74

               
               
               Conread position:534-862
               
               
               Cow position:chr21:30835286-30835616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):24, 161

               
               
               Conread position:534-862
               
               
               Cow position:chr21:30849023-30848698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):65, 7

               
               
               Conread position:534-862
               
               
               Cow position:chr21:39403613-39403278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 253

               
               
               Conread position:534-862
               
               
               Cow position:chr21:44214048-44214361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):64, 127

               
               
               Conread position:535-706
               
               
               Cow position:chr21:18041923-18041752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:535-771
               
               
               Cow position:chr21:20418760-20418522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:535-788
               
               
               Cow position:chr21:28626165-28626417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):67, 150

               
               
               Conread position:535-807
               
               
               Cow position:chr21:12801822-12801555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):42, 58

               
               
               Conread position:535-809
               
               
               Cow position:chr21:27624634-27624895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):64, 96

               
               
               Conread position:535-810
               
               
               Cow position:chr21:33263774-33264041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):91, 64

               
               
               Conread position:535-848
               
               
               Cow position:chr21:41579676-41579991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):30, 90

               
               
               Conread position:535-859
               
               
               Cow position:chr21:4280747-4280429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):98, 116

               
               
               Conread position:535-860
               
               
               Cow position:chr21:9310969-9311303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 117

               
               
               Conread position:535-860
               
               
               Cow position:chr21:24858240-24858564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 64

               
               
               Conread position:535-861
               
               
               Cow position:chr21:47465196-47464870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:535-862
               
               
               Cow position:chr21:46962-47297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):64, 221

               
               
               Conread position:535-862
               
               
               Cow position:chr21:12916501-12916168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):23, 119

               
               
               Conread position:535-862
               
               
               Cow position:chr21:15584494-15584173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):64, 31

               
               
               Conread position:535-862
               
               
               Cow position:chr21:33982880-33982564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):67, 30

               
               
               Conread position:535-862
               
               
               Cow position:chr21:42500962-42501302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):30, 230

               
               
               Conread position:535-862
               
               
               Cow position:chr21:44825960-44825625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):174, 67

               
               
               Conread position:535-864
               
               
               Cow position:chr21:7394304-7394621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):8, 117

               
               
               Conread position:535-864
               
               
               Cow position:chr21:32339813-32339493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):32, 114

               
               
               Conread position:535-864
               
               
               Cow position:chr21:41155788-41156123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):64, 78

               
               
               Conread position:536-796
               
               
               Cow position:chr21:24598587-24598840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):106, 63

               
               
               Conread position:536-808
               
               
               Cow position:chr21:46264098-46264369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):248, 97

               
               
               Conread position:536-816
               
               
               Cow position:chr21:18780047-18779771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 118

               
               
               Conread position:536-862
               
               
               Cow position:chr21:27229868-27229553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):63, 98

               
               
               Conread position:536-862
               
               
               Cow position:chr21:41590634-41590316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:536-864
               
               
               Cow position:chr21:6713599-6713272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:538-858
               
               
               Cow position:chr21:641511-641830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 98

               
               
               Conread position:539-721
               
               
               Cow position:chr21:2679485-2679667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):60, 80

               
               
               Conread position:539-858
               
               
               Cow position:chr21:41974446-41974121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):60, 103

               
               
               Conread position:539-860
               
               
               Cow position:chr21:1511220-1511534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):60, 96

               
               
               Conread position:539-862
               
               
               Cow position:chr21:10816951-10817284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 242

               
               
               Conread position:539-862
               
               
               Cow position:chr21:17560000-17559666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):63, 110

               
               
               Conread position:539-862
               
               
               Cow position:chr21:40266050-40266374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 109

               
               
               Conread position:540-809
               
               
               Cow position:chr21:5392609-5392341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):59, 11

               
               
               Conread position:542-862
               
               
               Cow position:chr21:9301144-9301475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 245

               
               
               Conread position:543-852
               
               
               Cow position:chr21:18155637-18155324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 111

               
               
               Conread position:543-862
               
               
               Cow position:chr21:4281939-4281633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 84

               
               
               Conread position:547-782
               
               
               Cow position:chr21:297689-297925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):5, 45

               
               
               Conread position:548-862
               
               
               Cow position:chr21:8426379-8426693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:551-862
               
               
               Cow position:chr21:18060016-18059709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):7, 49

               
               
               Conread position:552-862
               
               
               Cow position:chr21:13656687-13656384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):197, 47

               
               
               Conread position:555-862
               
               
               Cow position:chr21:28919577-28919281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):44, 8

               
               
               Conread position:556-861
               
               
               Cow position:chr21:17890249-17890552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:556-862
               
               
               Cow position:chr21:22014133-22014441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):43, 66

               
               
               Conread position:565-862
               
               
               Cow position:chr21:41522452-41522163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):34, 94

               
               
               Conread position:567-862
               
               
               Cow position:chr21:742245-742524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):52, 21

               
               
               Conread position:568-862
               
               
               Cow position:chr21:868967-868669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):31, 55

               
               
               Conread position:575-862
               
               
               Cow position:chr21:10657137-10656851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):27, 58

               
               
               Conread position:585-862
               
               
               Cow position:chr21:12354718-12354452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):14, 25

               
               
               Conread position:585-862
               
               
               Cow position:chr21:14126263-14126522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:585-862
               
               
               Cow position:chr21:28030263-28030529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):14, 65

               
               
               Conread position:593-854
               
               
               Cow position:chr21:829227-828968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):45, 6

               
               
               Conread position:600-794
               
               
               Cow position:chr21:41046795-41046989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:601-804
               
               
               Cow position:chr21:30980586-30980387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:601-862
               
               
               Cow position:chr21:7169677-7169937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):6, 186

               
               
               Conread position:601-862
               
               
               Cow position:chr21:21615766-21616026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):22, 182

               
               
               Conread position:606-862
               
               
               Cow position:chr21:19240880-19240628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 177

               
               
               Conread position:609-825
               
               
               Cow position:chr21:28599889-28600096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:609-860
               
               
               Cow position:chr21:46599359-46599606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:609-862
               
               
               Cow position:chr21:71585-71836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:614-861
               
               
               Cow position:chr21:12104369-12104602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:619-809
               
               
               Cow position:chr21:19360167-19359980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):17, 44

               
               
               Conread position:620-862
               
               
               Cow position:chr21:36682332-36682576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 166

               
               
               Conread position:625-854
               
               
               Cow position:chr21:19868940-19868720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:628-862
               
               
               Cow position:chr21:41287775-41287546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):131, 21

               
               
               Conread position:639-862
               
               
               Cow position:chr21:22850950-22851165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:648-862
               
               
               Cow position:chr21:39393785-39393999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):104, 137

               
               
               Conread position:650-862
               
               
               Cow position:chr21:24875391-24875602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):58, 132

               
               
               Conread position:651-859
               
               
               Cow position:chr21:20163748-20163954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:651-864
               
               
               Cow position:chr21:16498559-16498767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:652-862
               
               
               Cow position:chr21:6851213-6851415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:653-862
               
               
               Cow position:chr21:17252936-17252727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):139, 51

               
               
               Conread position:658-862
               
               
               Cow position:chr21:11182599-11182799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):7, 112

               
               
               Conread position:661-861
               
               
               Cow position:chr21:24797707-24797904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:663-864
               
               
               Cow position:chr21:40820801-40820599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):127, 117

               
               
               Conread position:664-862
               
               
               Cow position:chr21:25012135-25012328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:665-862
               
               
               Cow position:chr21:15012493-15012681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:669-858
               
               
               Cow position:chr21:8506488-8506301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:669-858
               
               
               Cow position:chr21:8509376-8509189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:700-862
               
               
               Cow position:chr21:44732954-44732793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:703-862
               
               
               Cow position:chr21:40930383-40930226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:490-808
               
               
               Cow position:chr22:31510555-31510250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):31, 10

               
               
               Conread position:509-862
               
               
               Cow position:chr22:27681549-27681907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:526-859
               
               
               Cow position:chr22:6494019-6494355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):5, 63

               
               
               Conread position:527-635
               
               
               Cow position:chr22:19848545-19848436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:527-854
               
               
               Cow position:chr22:16251715-16251390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 119

               
               
               Conread position:527-861
               
               
               Cow position:chr22:39508192-39507858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):37, 41

               
               
               Conread position:527-862
               
               
               Cow position:chr22:3251143-3250797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):71, 124

               
               
               Conread position:527-862
               
               
               Cow position:chr22:4563210-4563539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):14, 7

               
               
               Conread position:527-863
               
               
               Cow position:chr22:36433118-36432787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):126, 7

               
               
               Conread position:528-809
               
               
               Cow position:chr22:21295873-21295594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):71, 43

               
               
               Conread position:530-727
               
               
               Cow position:chr22:226599-226405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:530-774
               
               
               Cow position:chr22:13300266-13300507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):69, 80

               
               
               Conread position:530-787
               
               
               Cow position:chr22:5384504-5384761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):69, 218

               
               
               Conread position:530-790
               
               
               Cow position:chr22:590192-590451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:530-808
               
               
               Cow position:chr22:28665138-28665412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):27, 117

               
               
               Conread position:530-845
               
               
               Cow position:chr22:10936976-10936680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):242, 63

               
               
               Conread position:530-861
               
               
               Cow position:chr22:8733478-8733164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):179, 67

               
               
               Conread position:530-861
               
               
               Cow position:chr22:15490512-15490837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):162, 66

               
               
               Conread position:530-862
               
               
               Cow position:chr22:7882407-7882733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 54

               
               
               Conread position:530-862
               
               
               Cow position:chr22:8138405-8138072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):243, 66

               
               
               Conread position:530-862
               
               
               Cow position:chr22:8732704-8732381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):237, 73

               
               
               Conread position:530-862
               
               
               Cow position:chr22:13670321-13669984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:530-862
               
               
               Cow position:chr22:15568161-15567839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 34

               
               
               Conread position:530-862
               
               
               Cow position:chr22:16095048-16094723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:530-862
               
               
               Cow position:chr22:30699032-30699348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):69, 45

               
               
               Conread position:530-862
               
               
               Cow position:chr22:32480626-32480284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):196, 69

               
               
               Conread position:530-864
               
               
               Cow position:chr22:4583410-4583746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):17, 243

               
               
               Conread position:531-827
               
               
               Cow position:chr22:15039328-15039036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):68, 79

               
               
               Conread position:531-864
               
               
               Cow position:chr22:1848918-1849260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:532-656
               
               
               Cow position:chr22:30689490-30689615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):67, 77

               
               
               Conread position:533-672
               
               
               Cow position:chr22:9734710-9734847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:533-714
               
               
               Cow position:chr22:27291951-27292127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):63, 114

               
               
               Conread position:533-718
               
               
               Cow position:chr22:41271143-41270961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):64, 101

               
               
               Conread position:533-761
               
               
               Cow position:chr22:22160580-22160809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:533-774
               
               
               Cow position:chr22:9283742-9283502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:533-778
               
               
               Cow position:chr22:26184306-26184061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 153

               
               
               Conread position:533-781
               
               
               Cow position:chr22:14638625-14638373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):66, 16

               
               
               Conread position:533-782
               
               
               Cow position:chr22:4645629-4645875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):68, 115

               
               
               Conread position:533-787
               
               
               Cow position:chr22:34750534-34750782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):66, 76

               
               
               Conread position:533-788
               
               
               Cow position:chr22:13861445-13861686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):103, 61

               
               
               Conread position:533-788
               
               
               Cow position:chr22:26141132-26141384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):69, 116

               
               
               Conread position:533-794
               
               
               Cow position:chr22:14924876-14924618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):66, 112

               
               
               Conread position:533-794
               
               
               Cow position:chr22:21502599-21502858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):66, 77

               
               
               Conread position:533-794
               
               
               Cow position:chr22:25743095-25742835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):39, 79

               
               
               Conread position:533-805
               
               
               Cow position:chr22:30049713-30049441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):66, 253

               
               
               Conread position:533-806
               
               
               Cow position:chr22:4017333-4017605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):66, 112

               
               
               Conread position:533-808
               
               
               Cow position:chr22:16044565-16044288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):24, 123

               
               
               Conread position:533-808
               
               
               Cow position:chr22:43119872-43119601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):66, 104

               
               
               Conread position:533-809
               
               
               Cow position:chr22:23176585-23176311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 86

               
               
               Conread position:533-812
               
               
               Cow position:chr22:1590879-1591155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:533-816
               
               
               Cow position:chr22:845758-846047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 55

               
               
               Conread position:533-816
               
               
               Cow position:chr22:1563394-1563117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):66, 76

               
               
               Conread position:533-822
               
               
               Cow position:chr22:19173555-19173844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 77

               
               
               Conread position:533-822
               
               
               Cow position:chr22:21890500-21890216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):98, 62

               
               
               Conread position:533-823
               
               
               Cow position:chr22:10420887-10421178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):226, 0

               
               
               Conread position:533-828
               
               
               Cow position:chr22:2623663-2623373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:533-839
               
               
               Cow position:chr22:1068057-1067754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):66, 119

               
               
               Conread position:533-843
               
               
               Cow position:chr22:1309872-1309570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 95

               
               
               Conread position:533-845
               
               
               Cow position:chr22:6327910-6327605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:533-845
               
               
               Cow position:chr22:12681941-12681632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):47, 28

               
               
               Conread position:533-845
               
               
               Cow position:chr22:32892555-32892865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):212, 47

               
               
               Conread position:533-845
               
               
               Cow position:chr22:45807696-45807998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):66, 119

               
               
               Conread position:533-851
               
               
               Cow position:chr22:29290277-29289977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):111, 50

               
               
               Conread position:533-852
               
               
               Cow position:chr22:1484718-1485039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):30, 49

               
               
               Conread position:533-852
               
               
               Cow position:chr22:4108883-4108555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 239

               
               
               Conread position:533-852
               
               
               Cow position:chr22:38930654-38930331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):32, 123

               
               
               Conread position:533-854
               
               
               Cow position:chr22:41982859-41982544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 63

               
               
               Conread position:533-857
               
               
               Cow position:chr22:15068281-15068607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):33, 85

               
               
               Conread position:533-859
               
               
               Cow position:chr22:2403732-2404060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):66, 202

               
               
               Conread position:533-859
               
               
               Cow position:chr22:9127262-9127589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):66, 131

               
               
               Conread position:533-859
               
               
               Cow position:chr22:11613280-11613605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 125

               
               
               Conread position:533-860
               
               
               Cow position:chr22:40374462-40374787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):25, 102

               
               
               Conread position:533-861
               
               
               Cow position:chr22:6215701-6215375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):66, 30

               
               
               Conread position:533-861
               
               
               Cow position:chr22:10339257-10338924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):269, 58

               
               
               Conread position:533-861
               
               
               Cow position:chr22:13957789-13957463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:533-861
               
               
               Cow position:chr22:16532936-16533254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:533-861
               
               
               Cow position:chr22:22861053-22860729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:533-861
               
               
               Cow position:chr22:30483773-30484086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:533-861
               
               
               Cow position:chr22:30998753-30999072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):251, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr22:4043788-4044106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):122, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr22:4061090-4060765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 114

               
               
               Conread position:533-862
               
               
               Cow position:chr22:4356950-4357266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):37, 83

               
               
               Conread position:533-862
               
               
               Cow position:chr22:4372901-4373217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):203, 50

               
               
               Conread position:533-862
               
               
               Cow position:chr22:6709919-6709607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 29

               
               
               Conread position:533-862
               
               
               Cow position:chr22:7967557-7967879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):15, 169

               
               
               Conread position:533-862
               
               
               Cow position:chr22:8877132-8877432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):252, 64

               
               
               Conread position:533-862
               
               
               Cow position:chr22:9668421-9668762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 241

               
               
               Conread position:533-862
               
               
               Cow position:chr22:10122247-10122551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):226, 50

               
               
               Conread position:533-862
               
               
               Cow position:chr22:10161821-10162150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 64

               
               
               Conread position:533-862
               
               
               Cow position:chr22:10314931-10315279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):66, 59

               
               
               Conread position:533-862
               
               
               Cow position:chr22:10532358-10532676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):31, 99

               
               
               Conread position:533-862
               
               
               Cow position:chr22:14378823-14378509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):241, 60

               
               
               Conread position:533-862
               
               
               Cow position:chr22:15959915-15959591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 126

               
               
               Conread position:533-862
               
               
               Cow position:chr22:17152537-17152871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr22:18259080-18259399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 90

               
               
               Conread position:533-862
               
               
               Cow position:chr22:18926211-18926539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:533-862
               
               
               Cow position:chr22:20626697-20627016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):213, 64

               
               
               Conread position:533-862
               
               
               Cow position:chr22:25222043-25221720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):66, 194

               
               
               Conread position:533-862
               
               
               Cow position:chr22:26339612-26339947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):66, 76

               
               
               Conread position:533-862
               
               
               Cow position:chr22:27274834-27274506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 31

               
               
               Conread position:533-862
               
               
               Cow position:chr22:28356895-28357210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):66, 89

               
               
               Conread position:533-862
               
               
               Cow position:chr22:33399625-33399306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):66, 47

               
               
               Conread position:533-862
               
               
               Cow position:chr22:34441775-34441449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):119, 18

               
               
               Conread position:533-862
               
               
               Cow position:chr22:37201709-37202031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):34, 108

               
               
               Conread position:533-862
               
               
               Cow position:chr22:39696147-39696480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):66, 75

               
               
               Conread position:533-862
               
               
               Cow position:chr22:40121022-40120690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):26, 67

               
               
               Conread position:533-862
               
               
               Cow position:chr22:40789425-40789740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr22:41898590-41898266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):66, 27

               
               
               Conread position:533-862
               
               
               Cow position:chr22:43131695-43131371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):238, 30

               
               
               Conread position:533-862
               
               
               Cow position:chr22:43812563-43812258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):40, 60

               
               
               Conread position:533-862
               
               
               Cow position:chr22:44717569-44717903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:533-864
               
               
               Cow position:chr22:3533800-3534116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:533-864
               
               
               Cow position:chr22:6097169-6096831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):24, 91

               
               
               Conread position:533-864
               
               
               Cow position:chr22:11130726-11131054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 30

               
               
               Conread position:533-864
               
               
               Cow position:chr22:28146540-28146867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):113, 28

               
               
               Conread position:533-864
               
               
               Cow position:chr22:33448228-33447893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):32, 120

               
               
               Conread position:533-864
               
               
               Cow position:chr22:42635575-42635247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 55

               
               
               Conread position:533-864
               
               
               Cow position:chr22:43397869-43398184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):69, 107

               
               
               Conread position:534-739
               
               
               Cow position:chr22:26097763-26097559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):65, 114

               
               
               Conread position:534-745
               
               
               Cow position:chr22:17993175-17992964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):65, 88

               
               
               Conread position:534-747
               
               
               Cow position:chr22:911955-912167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):65, 75

               
               
               Conread position:534-754
               
               
               Cow position:chr22:19775574-19775357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):97, 65

               
               
               Conread position:534-804
               
               
               Cow position:chr22:2216680-2216932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):70, 76

               
               
               Conread position:534-808
               
               
               Cow position:chr22:3965041-3965316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:534-851
               
               
               Cow position:chr22:30515109-30515441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):68, 259

               
               
               Conread position:534-852
               
               
               Cow position:chr22:14366093-14365779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):246, 48

               
               
               Conread position:534-860
               
               
               Cow position:chr22:25361344-25361658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):64, 79

               
               
               Conread position:534-861
               
               
               Cow position:chr22:25237293-25236947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 234

               
               
               Conread position:534-861
               
               
               Cow position:chr22:30818068-30818391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):98, 59

               
               
               Conread position:534-861
               
               
               Cow position:chr22:31646350-31646665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 65

               
               
               Conread position:534-861
               
               
               Cow position:chr22:40387016-40387333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 62

               
               
               Conread position:534-862
               
               
               Cow position:chr22:6721216-6720898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:534-862
               
               
               Cow position:chr22:10294900-10295211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):102, 63

               
               
               Conread position:534-862
               
               
               Cow position:chr22:10685231-10684915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):35, 42

               
               
               Conread position:534-862
               
               
               Cow position:chr22:11370730-11370409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):218, 65

               
               
               Conread position:534-862
               
               
               Cow position:chr22:27267397-27267737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):65, 117

               
               
               Conread position:534-862
               
               
               Cow position:chr22:28370804-28371114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:238
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):65, 47

               
               
               Conread position:534-862
               
               
               Cow position:chr22:32326660-32326982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):65, 106

               
               
               Conread position:534-862
               
               
               Cow position:chr22:40048413-40048741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):65, 28

               
               
               Conread position:534-862
               
               
               Cow position:chr22:41971300-41970974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):65, 31

               
               
               Conread position:534-864
               
               
               Cow position:chr22:3301467-3301151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):225, 29

               
               
               Conread position:534-864
               
               
               Cow position:chr22:8324106-8324433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):255, 59

               
               
               Conread position:534-864
               
               
               Cow position:chr22:8412385-8412715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):65, 100

               
               
               Conread position:534-864
               
               
               Cow position:chr22:11767193-11766863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):33, 129

               
               
               Conread position:534-864
               
               
               Cow position:chr22:28640293-28639971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):65, 117

               
               
               Conread position:535-706
               
               
               Cow position:chr22:1874551-1874720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:535-744
               
               
               Cow position:chr22:14882251-14882050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):114, 64

               
               
               Conread position:535-771
               
               
               Cow position:chr22:864660-864422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 180

               
               
               Conread position:535-776
               
               
               Cow position:chr22:34735726-34735962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):118, 65

               
               
               Conread position:535-802
               
               
               Cow position:chr22:17764238-17764498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):82, 64

               
               
               Conread position:535-803
               
               
               Cow position:chr22:15090598-15090866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):26, 118

               
               
               Conread position:535-806
               
               
               Cow position:chr22:37324404-37324671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 31

               
               
               Conread position:535-808
               
               
               Cow position:chr22:3316980-3317250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):74, 62

               
               
               Conread position:535-841
               
               
               Cow position:chr22:17224806-17224507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):51, 63

               
               
               Conread position:535-845
               
               
               Cow position:chr22:15950521-15950221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:535-845
               
               
               Cow position:chr22:26166762-26166449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):64, 116

               
               
               Conread position:535-852
               
               
               Cow position:chr22:12800521-12800847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):32, 123

               
               
               Conread position:535-859
               
               
               Cow position:chr22:12573066-12573385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):67, 148

               
               
               Conread position:535-862
               
               
               Cow position:chr22:5616162-5616479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):31, 118

               
               
               Conread position:535-862
               
               
               Cow position:chr22:9372370-9372709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):32, 77

               
               
               Conread position:535-862
               
               
               Cow position:chr22:12315669-12315990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):32, 116

               
               
               Conread position:535-862
               
               
               Cow position:chr22:12803527-12803205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 28

               
               
               Conread position:535-862
               
               
               Cow position:chr22:18021163-18020848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):67, 35

               
               
               Conread position:535-862
               
               
               Cow position:chr22:28071416-28071741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:535-862
               
               
               Cow position:chr22:30269271-30269584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):64, 45

               
               
               Conread position:535-862
               
               
               Cow position:chr22:40349208-40349524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):67, 53

               
               
               Conread position:535-863
               
               
               Cow position:chr22:33949141-33948793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):64, 228

               
               
               Conread position:535-864
               
               
               Cow position:chr22:8090670-8090350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):64, 111

               
               
               Conread position:535-864
               
               
               Cow position:chr22:24066376-24066054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):64, 49

               
               
               Conread position:535-864
               
               
               Cow position:chr22:32698618-32698948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):19, 92

               
               
               Conread position:536-707
               
               
               Cow position:chr22:36569690-36569521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 98

               
               
               Conread position:536-767
               
               
               Cow position:chr22:8481502-8481733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):69, 104

               
               
               Conread position:536-861
               
               
               Cow position:chr22:17852766-17852456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:536-862
               
               
               Cow position:chr22:14178967-14178649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):53, 122

               
               
               Conread position:536-862
               
               
               Cow position:chr22:14691113-14690776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):29, 94

               
               
               Conread position:536-864
               
               
               Cow position:chr22:34631996-34632336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):101, 124

               
               
               Conread position:538-859
               
               
               Cow position:chr22:17950102-17949797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):98, 13

               
               
               Conread position:539-745
               
               
               Cow position:chr22:3993474-3993677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:539-784
               
               
               Cow position:chr22:45846008-45846247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 91

               
               
               Conread position:539-861
               
               
               Cow position:chr22:3987378-3987704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):19, 107

               
               
               Conread position:539-862
               
               
               Cow position:chr22:38439292-38438975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 40

               
               
               Conread position:539-862
               
               
               Cow position:chr22:45796205-45796527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):95, 41

               
               
               Conread position:540-808
               
               
               Cow position:chr22:17295067-17294805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):59, 23

               
               
               Conread position:540-845
               
               
               Cow position:chr22:6622382-6622082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):19, 94

               
               
               Conread position:540-845
               
               
               Cow position:chr22:16273497-16273810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):25, 232

               
               
               Conread position:540-845
               
               
               Cow position:chr22:23689342-23689035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 111

               
               
               Conread position:540-856
               
               
               Cow position:chr22:11813858-11813546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 72

               
               
               Conread position:540-857
               
               
               Cow position:chr22:17193250-17193572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 109

               
               
               Conread position:540-860
               
               
               Cow position:chr22:10567838-10567538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):62, 73

               
               
               Conread position:540-860
               
               
               Cow position:chr22:21012253-21012566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):280, 68

               
               
               Conread position:541-737
               
               
               Cow position:chr22:45019971-45019785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 68

               
               
               Conread position:541-808
               
               
               Cow position:chr22:3950114-3950382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 108

               
               
               Conread position:541-853
               
               
               Cow position:chr22:15025245-15024935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:541-862
               
               
               Cow position:chr22:8429748-8430073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 86

               
               
               Conread position:541-862
               
               
               Cow position:chr22:10302878-10303198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):22, 113

               
               
               Conread position:541-864
               
               
               Cow position:chr22:13735401-13735085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 59

               
               
               Conread position:542-642
               
               
               Cow position:chr22:7252777-7252676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:542-787
               
               
               Cow position:chr22:21355273-21355032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):57, 91

               
               
               Conread position:542-862
               
               
               Cow position:chr22:8418331-8418647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):16, 99

               
               
               Conread position:543-807
               
               
               Cow position:chr22:25387190-25387456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):104, 55

               
               
               Conread position:543-862
               
               
               Cow position:chr22:7081895-7082212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 57

               
               
               Conread position:543-862
               
               
               Cow position:chr22:22612977-22613285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:544-761
               
               
               Cow position:chr22:42612326-42612542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:544-843
               
               
               Cow position:chr22:4119698-4119399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 227

               
               
               Conread position:544-862
               
               
               Cow position:chr22:14245567-14245255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):94, 48

               
               
               Conread position:544-862
               
               
               Cow position:chr22:19827998-19827678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:544-862
               
               
               Cow position:chr22:23980346-23980024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):14, 211

               
               
               Conread position:547-770
               
               
               Cow position:chr22:7884859-7885082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):52, 115

               
               
               Conread position:552-845
               
               
               Cow position:chr22:44740967-44741239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:555-862
               
               
               Cow position:chr22:10609232-10609540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 219

               
               
               Conread position:555-862
               
               
               Cow position:chr22:14143234-14142941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 123

               
               
               Conread position:556-781
               
               
               Cow position:chr22:4011063-4011288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):46, 75

               
               
               Conread position:556-789
               
               
               Cow position:chr22:12341074-12341307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):43, 165

               
               
               Conread position:559-862
               
               
               Cow position:chr22:30697042-30697331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):44, 86

               
               
               Conread position:565-793
               
               
               Cow position:chr22:12527237-12527007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):34, 102

               
               
               Conread position:565-861
               
               
               Cow position:chr22:37947611-37947908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 148

               
               
               Conread position:566-809
               
               
               Cow position:chr22:1870990-1871229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):80, 33

               
               
               Conread position:566-832
               
               
               Cow position:chr22:617010-617276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 78

               
               
               Conread position:566-852
               
               
               Cow position:chr22:14091332-14091048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:566-861
               
               
               Cow position:chr22:12892477-12892179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):85, 34

               
               
               Conread position:566-862
               
               
               Cow position:chr22:12388986-12389285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):33, 204

               
               
               Conread position:566-862
               
               
               Cow position:chr22:18838139-18838433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):33, 67

               
               
               Conread position:568-859
               
               
               Cow position:chr22:39215725-39215432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 72

               
               
               Conread position:568-862
               
               
               Cow position:chr22:9597688-9597402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 7

               
               
               Conread position:569-809
               
               
               Cow position:chr22:3842510-3842750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 145

               
               
               Conread position:569-862
               
               
               Cow position:chr22:285467-285184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 51

               
               
               Conread position:571-822
               
               
               Cow position:chr22:13222006-13222259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):28, 209

               
               
               Conread position:577-808
               
               
               Cow position:chr22:34104775-34104544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):22, 77

               
               
               Conread position:582-832
               
               
               Cow position:chr22:4315533-4315787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):17, 132

               
               
               Conread position:584-862
               
               
               Cow position:chr22:24903496-24903774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:586-862
               
               
               Cow position:chr22:12981813-12981542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):217, 127

               
               
               Conread position:586-862
               
               
               Cow position:chr22:17652342-17652615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):13, 170

               
               
               Conread position:587-843
               
               
               Cow position:chr22:1659072-1659336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:587-858
               
               
               Cow position:chr22:1983762-1984036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):17, 53

               
               
               Conread position:591-862
               
               
               Cow position:chr22:12678506-12678238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 54

               
               
               Conread position:592-862
               
               
               Cow position:chr22:14214448-14214184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 54

               
               
               Conread position:598-862
               
               
               Cow position:chr22:16541730-16541466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):199, 46

               
               
               Conread position:601-862
               
               
               Cow position:chr22:12157918-12157666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:601-863
               
               
               Cow position:chr22:1025812-1026087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 46

               
               
               Conread position:602-838
               
               
               Cow position:chr22:9171331-9171566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):44, 183

               
               
               Conread position:603-862
               
               
               Cow position:chr22:26056943-26056684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 186

               
               
               Conread position:604-862
               
               
               Cow position:chr22:2109695-2109447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:605-862
               
               
               Cow position:chr22:42617927-42618178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:609-861
               
               
               Cow position:chr22:1349756-1350014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 183

               
               
               Conread position:609-862
               
               
               Cow position:chr22:21526852-21527092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:620-861
               
               
               Cow position:chr22:2101003-2100767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:629-862
               
               
               Cow position:chr22:7497157-7496924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:630-857
               
               
               Cow position:chr22:33985848-33985629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):197, 83

               
               
               Conread position:632-862
               
               
               Cow position:chr22:12902892-12902673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:635-862
               
               
               Cow position:chr22:24134366-24134140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):155, 78

               
               
               Conread position:639-862
               
               
               Cow position:chr22:14141381-14141158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):120, 115

               
               
               Conread position:640-858
               
               
               Cow position:chr22:1588256-1588474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):112, 117

               
               
               Conread position:640-861
               
               
               Cow position:chr22:6289540-6289317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):112, 9

               
               
               Conread position:648-862
               
               
               Cow position:chr22:1776029-1776246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:651-862
               
               
               Cow position:chr22:4163952-4164162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):152, 49

               
               
               Conread position:661-862
               
               
               Cow position:chr22:16724704-16724505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):91, 96

               
               
               Conread position:662-862
               
               
               Cow position:chr22:6176301-6176099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):122, 30

               
               
               Conread position:662-862
               
               
               Cow position:chr22:14487919-14488121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:662-862
               
               
               Cow position:chr22:21905456-21905651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):172, 11

               
               
               Conread position:663-862
               
               
               Cow position:chr22:7584251-7584060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:663-862
               
               
               Cow position:chr22:16813783-16813978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:667-861
               
               
               Cow position:chr22:11189020-11189212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):100, 51

               
               
               Conread position:673-862
               
               
               Cow position:chr22:4628548-4628745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:673-862
               
               
               Cow position:chr22:8327741-8327924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):147, 65

               
               
               Conread position:677-864
               
               
               Cow position:chr22:24890220-24890405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 30

               
               
               Conread position:680-862
               
               
               Cow position:chr22:26188872-26189055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):91, 108

               
               
               Conread position:680-864
               
               
               Cow position:chr22:1304552-1304370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 80

               
               
               Conread position:681-862
               
               
               Cow position:chr22:7518558-7518737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):78, 73

               
               
               Conread position:684-861
               
               
               Cow position:chr22:28493273-28493099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):118, 60

               
               
               Conread position:693-862
               
               
               Cow position:chr22:9735284-9735451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:707-862
               
               
               Cow position:chr22:12207677-12207524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:707-864
               
               
               Cow position:chr22:10594637-10594795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:715-864
               
               
               Cow position:chr22:33566057-33565910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:731-861
               
               
               Cow position:chr22:29546692-29546819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:486-862
               
               
               Cow position:chr23:11081073-11081447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):81, 57

               
               
               Conread position:522-809
               
               
               Cow position:chr23:3409054-3408770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):121, 75

               
               
               Conread position:524-791
               
               
               Cow position:chr23:17404691-17404955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):75, 124

               
               
               Conread position:527-809
               
               
               Cow position:chr23:4329826-4329533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:530-774
               
               
               Cow position:chr23:11845142-11845377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:530-796
               
               
               Cow position:chr23:13599203-13599464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):69, 119

               
               
               Conread position:530-816
               
               
               Cow position:chr23:1428670-1428951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:530-841
               
               
               Cow position:chr23:4968665-4968359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):27, 121

               
               
               Conread position:530-861
               
               
               Cow position:chr23:5162284-5162630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:530-861
               
               
               Cow position:chr23:39813363-39813690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:530-862
               
               
               Cow position:chr23:1290154-1290495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):132, 69

               
               
               Conread position:530-862
               
               
               Cow position:chr23:15287272-15286962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 70

               
               
               Conread position:530-862
               
               
               Cow position:chr23:26841299-26841611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):114, 41

               
               
               Conread position:530-862
               
               
               Cow position:chr23:29626273-29626615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:530-862
               
               
               Cow position:chr23:31493730-31494056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):104, 50

               
               
               Conread position:533-691
               
               
               Cow position:chr23:14191414-14191573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 120

               
               
               Conread position:533-695
               
               
               Cow position:chr23:15056781-15056619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):68, 153

               
               
               Conread position:533-707
               
               
               Cow position:chr23:16664705-16664535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):109, 59

               
               
               Conread position:533-747
               
               
               Cow position:chr23:6367470-6367685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:533-754
               
               
               Cow position:chr23:19371209-19370993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):64, 113

               
               
               Conread position:533-756
               
               
               Cow position:chr23:16563702-16563922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 97

               
               
               Conread position:533-768
               
               
               Cow position:chr23:10014400-10014625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:533-789
               
               
               Cow position:chr23:11045347-11045603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):66, 118

               
               
               Conread position:533-789
               
               
               Cow position:chr23:14164540-14164280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):57, 236

               
               
               Conread position:533-789
               
               
               Cow position:chr23:26050897-26051155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):66, 223

               
               
               Conread position:533-792
               
               
               Cow position:chr23:1767691-1767948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:533-795
               
               
               Cow position:chr23:27544690-27544952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:533-795
               
               
               Cow position:chr23:33622291-33622029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 67

               
               
               Conread position:533-803
               
               
               Cow position:chr23:2488120-2487862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):65, 39

               
               
               Conread position:533-804
               
               
               Cow position:chr23:5706861-5707123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:533-807
               
               
               Cow position:chr23:12334070-12334348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:533-808
               
               
               Cow position:chr23:1923975-1923702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:533-808
               
               
               Cow position:chr23:21502776-21502497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):105, 64

               
               
               Conread position:533-808
               
               
               Cow position:chr23:29034178-29034448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):66, 178

               
               
               Conread position:533-808
               
               
               Cow position:chr23:33717679-33717409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):66, 116

               
               
               Conread position:533-809
               
               
               Cow position:chr23:18402428-18402150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 118

               
               
               Conread position:533-819
               
               
               Cow position:chr23:1776768-1776495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):29, 36

               
               
               Conread position:533-823
               
               
               Cow position:chr23:21764779-21765066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 211

               
               
               Conread position:533-843
               
               
               Cow position:chr23:20057005-20056712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):66, 182

               
               
               Conread position:533-844
               
               
               Cow position:chr23:10829721-10829408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 74

               
               
               Conread position:533-852
               
               
               Cow position:chr23:16631129-16631451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 45

               
               
               Conread position:533-852
               
               
               Cow position:chr23:29786489-29786164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 132

               
               
               Conread position:533-858
               
               
               Cow position:chr23:3394632-3394315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):66, 58

               
               
               Conread position:533-860
               
               
               Cow position:chr23:2501992-2501670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 78

               
               
               Conread position:533-860
               
               
               Cow position:chr23:7360978-7361282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 111

               
               
               Conread position:533-861
               
               
               Cow position:chr23:1585524-1585211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):157, 66

               
               
               Conread position:533-861
               
               
               Cow position:chr23:34356498-34356829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 123

               
               
               Conread position:533-861
               
               
               Cow position:chr23:39752979-39753290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):66, 73

               
               
               Conread position:533-862
               
               
               Cow position:chr23:187039-187368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):66, 119

               
               
               Conread position:533-862
               
               
               Cow position:chr23:2282313-2281999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:533-862
               
               
               Cow position:chr23:3245061-3244726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):32, 213

               
               
               Conread position:533-862
               
               
               Cow position:chr23:3247446-3247778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 129

               
               
               Conread position:533-862
               
               
               Cow position:chr23:4646378-4646696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):95, 60

               
               
               Conread position:533-862
               
               
               Cow position:chr23:5426292-5426626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr23:5436783-5436451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):24, 8

               
               
               Conread position:533-862
               
               
               Cow position:chr23:5451186-5451511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 95

               
               
               Conread position:533-862
               
               
               Cow position:chr23:15742953-15743280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):64, 88

               
               
               Conread position:533-862
               
               
               Cow position:chr23:16583054-16582718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):30, 107

               
               
               Conread position:533-862
               
               
               Cow position:chr23:20744730-20744393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):247, 64

               
               
               Conread position:533-862
               
               
               Cow position:chr23:24509563-24509873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:533-862
               
               
               Cow position:chr23:25864826-25864505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):261, 58

               
               
               Conread position:533-862
               
               
               Cow position:chr23:26632664-26632989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):64, 116

               
               
               Conread position:533-862
               
               
               Cow position:chr23:26949060-26949380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 123

               
               
               Conread position:533-862
               
               
               Cow position:chr23:26986410-26986083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):78, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr23:37065702-37066045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr23:39778267-39778586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):101, 50

               
               
               Conread position:533-864
               
               
               Cow position:chr23:1885311-1884982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 46

               
               
               Conread position:533-864
               
               
               Cow position:chr23:8698308-8698616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):257, 48

               
               
               Conread position:533-864
               
               
               Cow position:chr23:9599357-9599679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):101, 65

               
               
               Conread position:533-864
               
               
               Cow position:chr23:39049562-39049249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):102, 58

               
               
               Conread position:534-781
               
               
               Cow position:chr23:14838878-14838636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):63, 87

               
               
               Conread position:534-790
               
               
               Cow position:chr23:1721122-1720865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):65, 95

               
               
               Conread position:534-844
               
               
               Cow position:chr23:7845155-7845462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):65, 118

               
               
               Conread position:534-857
               
               
               Cow position:chr23:33711624-33711946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):65, 100

               
               
               Conread position:534-859
               
               
               Cow position:chr23:6244721-6244416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:534-859
               
               
               Cow position:chr23:20248834-20248508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):24, 106

               
               
               Conread position:534-861
               
               
               Cow position:chr23:4579173-4578846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):65, 49

               
               
               Conread position:534-862
               
               
               Cow position:chr23:534091-534415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 34

               
               
               Conread position:534-862
               
               
               Cow position:chr23:1337439-1337118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):23, 114

               
               
               Conread position:534-862
               
               
               Cow position:chr23:8293367-8293699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:534-862
               
               
               Cow position:chr23:12363756-12363430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 116

               
               
               Conread position:534-862
               
               
               Cow position:chr23:16881300-16880981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 118

               
               
               Conread position:534-862
               
               
               Cow position:chr23:22414431-22414120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):288, 31

               
               
               Conread position:534-862
               
               
               Cow position:chr23:40778128-40778452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):33, 116

               
               
               Conread position:534-864
               
               
               Cow position:chr23:3282253-3281919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):239, 65

               
               
               Conread position:534-864
               
               
               Cow position:chr23:29345894-29345586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:535-741
               
               
               Cow position:chr23:4980682-4980478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):64, 105

               
               
               Conread position:535-750
               
               
               Cow position:chr23:36309284-36309498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):64, 142

               
               
               Conread position:535-789
               
               
               Cow position:chr23:40891224-40891479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:535-794
               
               
               Cow position:chr23:16700179-16699922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):22, 115

               
               
               Conread position:535-794
               
               
               Cow position:chr23:29459226-29458979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):64, 42

               
               
               Conread position:535-862
               
               
               Cow position:chr23:18902184-18901877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):62, 106

               
               
               Conread position:535-862
               
               
               Cow position:chr23:41472477-41472814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 87

               
               
               Conread position:536-791
               
               
               Cow position:chr23:30950824-30951074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):221, 52

               
               
               Conread position:536-862
               
               
               Cow position:chr23:5437134-5436812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):26, 110

               
               
               Conread position:536-862
               
               
               Cow position:chr23:32480172-32479828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:539-683
               
               
               Cow position:chr23:24809798-24809652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):58, 114

               
               
               Conread position:539-748
               
               
               Cow position:chr23:1634552-1634757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 113

               
               
               Conread position:539-800
               
               
               Cow position:chr23:24867173-24867437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):60, 219

               
               
               Conread position:539-813
               
               
               Cow position:chr23:9268460-9268720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:539-858
               
               
               Cow position:chr23:35938209-35938514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):63, 49

               
               
               Conread position:539-859
               
               
               Cow position:chr23:21452864-21452546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):60, 114

               
               
               Conread position:539-862
               
               
               Cow position:chr23:1883261-1883582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 67

               
               
               Conread position:539-862
               
               
               Cow position:chr23:5732417-5732726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):60, 170

               
               
               Conread position:540-754
               
               
               Cow position:chr23:40844521-40844733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 42

               
               
               Conread position:540-795
               
               
               Cow position:chr23:3434042-3433792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):59, 88

               
               
               Conread position:540-861
               
               
               Cow position:chr23:19221784-19221453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 121

               
               
               Conread position:540-864
               
               
               Cow position:chr23:4996232-4995905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 61

               
               
               Conread position:541-852
               
               
               Cow position:chr23:349858-349542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 202

               
               
               Conread position:541-862
               
               
               Cow position:chr23:11315154-11314828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):96, 54

               
               
               Conread position:542-862
               
               
               Cow position:chr23:16246604-16246926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 85

               
               
               Conread position:542-862
               
               
               Cow position:chr23:18286068-18286372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):210, 51

               
               
               Conread position:543-720
               
               
               Cow position:chr23:2801813-2801635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 45

               
               
               Conread position:546-862
               
               
               Cow position:chr23:5795352-5795665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 153

               
               
               Conread position:548-862
               
               
               Cow position:chr23:1438173-1438467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):54, 31

               
               
               Conread position:555-862
               
               
               Cow position:chr23:307341-307647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:558-793
               
               
               Cow position:chr23:1876597-1876832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 82

               
               
               Conread position:559-816
               
               
               Cow position:chr23:39275777-39276038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 59

               
               
               Conread position:564-862
               
               
               Cow position:chr23:1222347-1222052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):38, 223

               
               
               Conread position:564-862
               
               
               Cow position:chr23:40348749-40348457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 34

               
               
               Conread position:565-862
               
               
               Cow position:chr23:11212399-11212693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):40, 220

               
               
               Conread position:567-861
               
               
               Cow position:chr23:24685147-24685428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):32, 66

               
               
               Conread position:568-862
               
               
               Cow position:chr23:15280602-15280306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:569-862
               
               
               Cow position:chr23:10497606-10497885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 47

               
               
               Conread position:571-858
               
               
               Cow position:chr23:24966559-24966276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 28

               
               
               Conread position:583-860
               
               
               Cow position:chr23:40391388-40391662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):16, 27

               
               
               Conread position:584-796
               
               
               Cow position:chr23:2799494-2799701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:584-860
               
               
               Cow position:chr23:20539295-20539566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):15, 203

               
               
               Conread position:585-860
               
               
               Cow position:chr23:3293605-3293876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):14, 187

               
               
               Conread position:585-862
               
               
               Cow position:chr23:3223523-3223253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):14, 55

               
               
               Conread position:585-864
               
               
               Cow position:chr23:2358805-2359067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 55

               
               
               Conread position:586-857
               
               
               Cow position:chr23:17486912-17486643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):13, 200

               
               
               Conread position:586-862
               
               
               Cow position:chr23:10416504-10416239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:587-864
               
               
               Cow position:chr23:38264618-38264338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):12, 80

               
               
               Conread position:588-852
               
               
               Cow position:chr23:18238610-18238345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 64

               
               
               Conread position:589-808
               
               
               Cow position:chr23:21440084-21439867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):10, 61

               
               
               Conread position:589-864
               
               
               Cow position:chr23:14523901-14524188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):16, 73

               
               
               Conread position:590-774
               
               
               Cow position:chr23:4470582-4470397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):44, 61

               
               
               Conread position:590-862
               
               
               Cow position:chr23:22298117-22297841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:591-862
               
               
               Cow position:chr23:18749144-18748887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):61, 7

               
               
               Conread position:598-858
               
               
               Cow position:chr23:5881591-5881336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):161, 64

               
               
               Conread position:601-846
               
               
               Cow position:chr23:26825008-26825235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:601-860
               
               
               Cow position:chr23:16961226-16961473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):183, 0

               
               
               Conread position:602-860
               
               
               Cow position:chr23:40637187-40637451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):26, 132

               
               
               Conread position:602-862
               
               
               Cow position:chr23:22586820-22587067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):175, 32

               
               
               Conread position:602-862
               
               
               Cow position:chr23:35965074-35965338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:603-799
               
               
               Cow position:chr23:349018-348823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 182

               
               
               Conread position:603-854
               
               
               Cow position:chr23:39330357-39330112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):151, 36

               
               
               Conread position:604-843
               
               
               Cow position:chr23:1981721-1981498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:606-845
               
               
               Cow position:chr23:40995107-40995338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:609-862
               
               
               Cow position:chr23:1614720-1614468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):164, 23

               
               
               Conread position:609-862
               
               
               Cow position:chr23:13202423-13202182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):25, 147

               
               
               Conread position:610-862
               
               
               Cow position:chr23:40275605-40275368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:621-862
               
               
               Cow position:chr23:2160685-2160453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):17, 85

               
               
               Conread position:628-862
               
               
               Cow position:chr23:20093286-20093055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:644-862
               
               
               Cow position:chr23:22668535-22668323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 141

               
               
               Conread position:648-862
               
               
               Cow position:chr23:7709766-7709971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:650-862
               
               
               Cow position:chr23:22238844-22238631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):140, 195

               
               
               Conread position:651-830
               
               
               Cow position:chr23:5785823-5786001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:651-862
               
               
               Cow position:chr23:4844585-4844801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):81, 116

               
               
               Conread position:651-862
               
               
               Cow position:chr23:39267763-39267974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 130

               
               
               Conread position:660-861
               
               
               Cow position:chr23:21423755-21423954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:661-862
               
               
               Cow position:chr23:18739476-18739272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):60, 93

               
               
               Conread position:662-859
               
               
               Cow position:chr23:1194502-1194309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:662-862
               
               
               Cow position:chr23:1877906-1877708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:662-862
               
               
               Cow position:chr23:17597416-17597611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):109, 101

               
               
               Conread position:662-862
               
               
               Cow position:chr23:18822979-18823173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:664-854
               
               
               Cow position:chr23:40501106-40500916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):129, 112

               
               
               Conread position:664-862
               
               
               Cow position:chr23:5395484-5395294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:667-841
               
               
               Cow position:chr23:4501747-4501912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:668-861
               
               
               Cow position:chr23:27848992-27849181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:675-862
               
               
               Cow position:chr23:36022782-36022603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:677-862
               
               
               Cow position:chr23:9131956-9131775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:680-862
               
               
               Cow position:chr23:7155685-7155512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:680-862
               
               
               Cow position:chr23:24718794-24718614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:680-862
               
               
               Cow position:chr23:24809430-24809248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):32, 46

               
               
               Conread position:695-862
               
               
               Cow position:chr23:16664379-16664214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:699-862
               
               
               Cow position:chr23:23104460-23104301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:718-862
               
               
               Cow position:chr23:1510881-1510739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 63

               
               
               Conread position:527-783
               
               
               Cow position:chr24:201804-201552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):111, 7

               
               
               Conread position:527-862
               
               
               Cow position:chr24:18485169-18484831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):7, 209

               
               
               Conread position:527-864
               
               
               Cow position:chr24:6102653-6102992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):31, 77

               
               
               Conread position:530-754
               
               
               Cow position:chr24:43432624-43432845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 112

               
               
               Conread position:530-778
               
               
               Cow position:chr24:2096057-2095803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 31

               
               
               Conread position:530-787
               
               
               Cow position:chr24:27824290-27824550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:530-832
               
               
               Cow position:chr24:27726181-27725879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):72, 16

               
               
               Conread position:530-862
               
               
               Cow position:chr24:352773-352442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):69, 118

               
               
               Conread position:530-864
               
               
               Cow position:chr24:30235705-30236036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 63

               
               
               Conread position:531-743
               
               
               Cow position:chr24:36404311-36404098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:531-847
               
               
               Cow position:chr24:29781997-29782311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):70, 121

               
               
               Conread position:531-862
               
               
               Cow position:chr24:10499047-10499380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 56

               
               
               Conread position:531-862
               
               
               Cow position:chr24:32609475-32609811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):27, 245

               
               
               Conread position:532-861
               
               
               Cow position:chr24:44987549-44987211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):33, 229

               
               
               Conread position:533-708
               
               
               Cow position:chr24:30178070-30178250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-732
               
               
               Cow position:chr24:6487758-6487949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:533-771
               
               
               Cow position:chr24:31324116-31324356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):53, 221

               
               
               Conread position:533-774
               
               
               Cow position:chr24:3430569-3430808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:533-774
               
               
               Cow position:chr24:27748482-27748715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:533-778
               
               
               Cow position:chr24:43364194-43364437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):34, 83

               
               
               Conread position:533-782
               
               
               Cow position:chr24:43927487-43927250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:533-793
               
               
               Cow position:chr24:32070801-32071053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):63, 115

               
               
               Conread position:533-796
               
               
               Cow position:chr24:29063813-29063564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:533-799
               
               
               Cow position:chr24:24250563-24250822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):64, 166

               
               
               Conread position:533-804
               
               
               Cow position:chr24:24457411-24457148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 78

               
               
               Conread position:533-804
               
               
               Cow position:chr24:33222107-33221829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):66, 260

               
               
               Conread position:533-806
               
               
               Cow position:chr24:23187082-23186811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):66, 48

               
               
               Conread position:533-808
               
               
               Cow position:chr24:15373244-15373514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:533-809
               
               
               Cow position:chr24:19769328-19769603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):44, 39

               
               
               Conread position:533-809
               
               
               Cow position:chr24:28327249-28326970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):105, 66

               
               
               Conread position:533-809
               
               
               Cow position:chr24:31159452-31159723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):66, 105

               
               
               Conread position:533-816
               
               
               Cow position:chr24:33153612-33153892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):66, 59

               
               
               Conread position:533-828
               
               
               Cow position:chr24:43200441-43200148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):69, 55

               
               
               Conread position:533-837
               
               
               Cow position:chr24:26554766-26554457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):34, 88

               
               
               Conread position:533-842
               
               
               Cow position:chr24:31359161-31359460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):66, 57

               
               
               Conread position:533-844
               
               
               Cow position:chr24:6912516-6912214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):103, 50

               
               
               Conread position:533-845
               
               
               Cow position:chr24:18357218-18356908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 48

               
               
               Conread position:533-846
               
               
               Cow position:chr24:20874515-20874826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 202

               
               
               Conread position:533-857
               
               
               Cow position:chr24:39143443-39143769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 122

               
               
               Conread position:533-858
               
               
               Cow position:chr24:7913837-7914167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):32, 224

               
               
               Conread position:533-859
               
               
               Cow position:chr24:11886996-11887312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 42

               
               
               Conread position:533-860
               
               
               Cow position:chr24:1269633-1269937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:533-860
               
               
               Cow position:chr24:17860420-17860102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):105, 59

               
               
               Conread position:533-860
               
               
               Cow position:chr24:39483312-39483623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:533-861
               
               
               Cow position:chr24:18343884-18344227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 242

               
               
               Conread position:533-861
               
               
               Cow position:chr24:18999882-19000204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):35, 85

               
               
               Conread position:533-861
               
               
               Cow position:chr24:31816424-31816736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):236, 10

               
               
               Conread position:533-861
               
               
               Cow position:chr24:32204959-32204623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:533-861
               
               
               Cow position:chr24:33098657-33098311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:533-861
               
               
               Cow position:chr24:34742590-34742910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):153, 58

               
               
               Conread position:533-862
               
               
               Cow position:chr24:2402539-2402215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 127

               
               
               Conread position:533-862
               
               
               Cow position:chr24:3165656-3165981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:533-862
               
               
               Cow position:chr24:3493727-3494043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr24:5141779-5142100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 100

               
               
               Conread position:533-862
               
               
               Cow position:chr24:6132038-6131725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):105, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr24:11840013-11840346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 123

               
               
               Conread position:533-862
               
               
               Cow position:chr24:16089071-16089391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):257, 65

               
               
               Conread position:533-862
               
               
               Cow position:chr24:17311374-17311067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr24:18474910-18474567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):66, 266

               
               
               Conread position:533-862
               
               
               Cow position:chr24:19179612-19179274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 127

               
               
               Conread position:533-862
               
               
               Cow position:chr24:19800681-19801001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):24, 113

               
               
               Conread position:533-862
               
               
               Cow position:chr24:27039877-27040212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):43, 142

               
               
               Conread position:533-862
               
               
               Cow position:chr24:27608263-27607949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):102, 50

               
               
               Conread position:533-862
               
               
               Cow position:chr24:27906273-27906600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:533-862
               
               
               Cow position:chr24:28303517-28303200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):213, 20

               
               
               Conread position:533-862
               
               
               Cow position:chr24:29595976-29595638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):32, 20

               
               
               Conread position:533-862
               
               
               Cow position:chr24:31036188-31036500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:533-862
               
               
               Cow position:chr24:31812023-31812347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):63, 77

               
               
               Conread position:533-862
               
               
               Cow position:chr24:33944239-33944568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:533-862
               
               
               Cow position:chr24:37650505-37650837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):66, 217

               
               
               Conread position:533-864
               
               
               Cow position:chr24:30229306-30229638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):31, 66

               
               
               Conread position:533-864
               
               
               Cow position:chr24:44041178-44040847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 140

               
               
               Conread position:534-695
               
               
               Cow position:chr24:17363811-17363652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:534-721
               
               
               Cow position:chr24:39833676-39833493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):65, 106

               
               
               Conread position:534-752
               
               
               Cow position:chr24:29180724-29180939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):64, 120

               
               
               Conread position:534-783
               
               
               Cow position:chr24:30897702-30897452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):68, 222

               
               
               Conread position:534-794
               
               
               Cow position:chr24:27290704-27290966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 78

               
               
               Conread position:534-808
               
               
               Cow position:chr24:29673355-29673629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 231

               
               
               Conread position:534-813
               
               
               Cow position:chr24:18017063-18017343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):24, 115

               
               
               Conread position:534-848
               
               
               Cow position:chr24:28990400-28990710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):65, 57

               
               
               Conread position:534-862
               
               
               Cow position:chr24:211821-212132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):65, 124

               
               
               Conread position:534-862
               
               
               Cow position:chr24:6450332-6450671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):29, 145

               
               
               Conread position:534-862
               
               
               Cow position:chr24:20801510-20801183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):23, 92

               
               
               Conread position:534-862
               
               
               Cow position:chr24:33372390-33372708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:535-790
               
               
               Cow position:chr24:15246797-15246552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 27

               
               
               Conread position:535-811
               
               
               Cow position:chr24:5754675-5754945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):89, 62

               
               
               Conread position:535-854
               
               
               Cow position:chr24:24491173-24490871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:535-858
               
               
               Cow position:chr24:37037736-37038049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):64, 28

               
               
               Conread position:535-862
               
               
               Cow position:chr24:28062789-28063112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):64, 86

               
               
               Conread position:535-862
               
               
               Cow position:chr24:28721728-28722039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):64, 115

               
               
               Conread position:536-809
               
               
               Cow position:chr24:34008740-34008467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 244

               
               
               Conread position:536-860
               
               
               Cow position:chr24:30484113-30483784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 128

               
               
               Conread position:536-862
               
               
               Cow position:chr24:40300997-40301322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):70, 114

               
               
               Conread position:536-862
               
               
               Cow position:chr24:43371085-43371405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 111

               
               
               Conread position:539-706
               
               
               Cow position:chr24:35794895-35794728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):107, 61

               
               
               Conread position:539-859
               
               
               Cow position:chr24:28496742-28496423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):60, 85

               
               
               Conread position:539-861
               
               
               Cow position:chr24:7476512-7476189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):19, 105

               
               
               Conread position:539-862
               
               
               Cow position:chr24:35985882-35985571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 61

               
               
               Conread position:539-862
               
               
               Cow position:chr24:36173940-36173617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):20, 62

               
               
               Conread position:540-750
               
               
               Cow position:chr24:4615677-4615464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 81

               
               
               Conread position:540-858
               
               
               Cow position:chr24:30314190-30313871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 88

               
               
               Conread position:541-790
               
               
               Cow position:chr24:28319357-28319118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 59

               
               
               Conread position:542-837
               
               
               Cow position:chr24:32054503-32054790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):25, 109

               
               
               Conread position:542-846
               
               
               Cow position:chr24:20943011-20943306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):57, 106

               
               
               Conread position:542-861
               
               
               Cow position:chr24:15057245-15057545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):57, 107

               
               
               Conread position:542-862
               
               
               Cow position:chr24:26929101-26928779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):16, 104

               
               
               Conread position:542-862
               
               
               Cow position:chr24:27220247-27219926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 63

               
               
               Conread position:543-736
               
               
               Cow position:chr24:43967656-43967462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:543-860
               
               
               Cow position:chr24:25885316-25884988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):56, 183

               
               
               Conread position:543-862
               
               
               Cow position:chr24:17104727-17104410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):56, 107

               
               
               Conread position:543-862
               
               
               Cow position:chr24:22689737-22689411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):23, 103

               
               
               Conread position:544-776
               
               
               Cow position:chr24:24755290-24755524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 59

               
               
               Conread position:547-862
               
               
               Cow position:chr24:35675394-35675693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):52, 75

               
               
               Conread position:555-793
               
               
               Cow position:chr24:24662272-24662039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):44, 26

               
               
               Conread position:555-850
               
               
               Cow position:chr24:16645465-16645168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:557-861
               
               
               Cow position:chr24:389960-390261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):42, 66

               
               
               Conread position:562-839
               
               
               Cow position:chr24:27349316-27349033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):15, 28

               
               
               Conread position:565-862
               
               
               Cow position:chr24:29606176-29605871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):34, 99

               
               
               Conread position:566-862
               
               
               Cow position:chr24:27713536-27713248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:568-807
               
               
               Cow position:chr24:14457853-14457618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):18, 103

               
               
               Conread position:571-862
               
               
               Cow position:chr24:29561701-29561417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):92, 28

               
               
               Conread position:572-862
               
               
               Cow position:chr24:39523573-39523288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):27, 74

               
               
               Conread position:577-808
               
               
               Cow position:chr24:39791418-39791649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):22, 207

               
               
               Conread position:583-862
               
               
               Cow position:chr24:37975096-37974821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):16, 27

               
               
               Conread position:594-864
               
               
               Cow position:chr24:230172-230444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):5, 210

               
               
               Conread position:598-861
               
               
               Cow position:chr24:28042873-28043155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:598-863
               
               
               Cow position:chr24:28342251-28342525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 188

               
               
               Conread position:601-862
               
               
               Cow position:chr24:37823432-37823686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:603-862
               
               
               Cow position:chr24:13948027-13948284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):170, 110

               
               
               Conread position:604-862
               
               
               Cow position:chr24:20364503-20364254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):45, 20

               
               
               Conread position:608-864
               
               
               Cow position:chr24:27284731-27284988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):151, 31

               
               
               Conread position:609-860
               
               
               Cow position:chr24:15288732-15288987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):25, 188

               
               
               Conread position:628-864
               
               
               Cow position:chr24:2992947-2992716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):174, 21

               
               
               Conread position:631-861
               
               
               Cow position:chr24:41916191-41916418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 18

               
               
               Conread position:631-862
               
               
               Cow position:chr24:2379890-2380117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):142, 24

               
               
               Conread position:638-862
               
               
               Cow position:chr24:26880693-26880917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):126, 16

               
               
               Conread position:651-862
               
               
               Cow position:chr24:5360670-5360873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):13, 66

               
               
               Conread position:656-862
               
               
               Cow position:chr24:29539972-29539768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:661-862
               
               
               Cow position:chr24:37651687-37651883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):180, 123

               
               
               Conread position:662-857
               
               
               Cow position:chr24:22133134-22133322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:662-862
               
               
               Cow position:chr24:21834996-21834801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:662-862
               
               
               Cow position:chr24:25122308-25122499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:662-862
               
               
               Cow position:chr24:29985021-29984828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:663-862
               
               
               Cow position:chr24:32891080-32890886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:663-862
               
               
               Cow position:chr24:42687812-42688003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:666-858
               
               
               Cow position:chr24:7757739-7757927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:671-862
               
               
               Cow position:chr24:3412655-3412843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:677-861
               
               
               Cow position:chr24:6886989-6887167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:691-862
               
               
               Cow position:chr24:10219393-10219224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:711-862
               
               
               Cow position:chr24:24540479-24540330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 73

               
               
               Conread position:512-862
               
               
               Cow position:chr25:14720591-14720916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):285, 80

               
               
               Conread position:521-858
               
               
               Cow position:chr25:12097691-12098017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):109, 28

               
               
               Conread position:526-790
               
               
               Cow position:chr25:22751159-22750894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):73, 127

               
               
               Conread position:527-854
               
               
               Cow position:chr25:20007986-20008310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):72, 96

               
               
               Conread position:528-695
               
               
               Cow position:chr25:36033290-36033456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 121

               
               
               Conread position:528-793
               
               
               Cow position:chr25:14157475-14157740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:528-864
               
               
               Cow position:chr25:14833806-14833482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 89

               
               
               Conread position:530-688
               
               
               Cow position:chr25:16001670-16001514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):69, 118

               
               
               Conread position:530-774
               
               
               Cow position:chr25:4547862-4547621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 86

               
               
               Conread position:530-789
               
               
               Cow position:chr25:18266014-18266276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:530-794
               
               
               Cow position:chr25:17975513-17975261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:530-808
               
               
               Cow position:chr25:5474372-5474103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):27, 102

               
               
               Conread position:530-813
               
               
               Cow position:chr25:12117134-12116863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):113, 69

               
               
               Conread position:530-860
               
               
               Cow position:chr25:5846949-5846623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):72, 31

               
               
               Conread position:530-861
               
               
               Cow position:chr25:13272427-13272752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:530-862
               
               
               Cow position:chr25:22178775-22179094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):87, 69

               
               
               Conread position:530-864
               
               
               Cow position:chr25:18721261-18720941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):12, 68

               
               
               Conread position:531-804
               
               
               Cow position:chr25:15254476-15254223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:531-807
               
               
               Cow position:chr25:18905740-18906015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):27, 102

               
               
               Conread position:533-681
               
               
               Cow position:chr25:7329405-7329553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:533-741
               
               
               Cow position:chr25:10218193-10217985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 131

               
               
               Conread position:533-750
               
               
               Cow position:chr25:21895029-21894812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):80, 66

               
               
               Conread position:533-774
               
               
               Cow position:chr25:36036923-36036682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):66, 82

               
               
               Conread position:533-782
               
               
               Cow position:chr25:12778671-12778436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):226, 50

               
               
               Conread position:533-790
               
               
               Cow position:chr25:6961296-6961040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):66, 15

               
               
               Conread position:533-793
               
               
               Cow position:chr25:32191528-32191770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:533-794
               
               
               Cow position:chr25:4681094-4681343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:533-804
               
               
               Cow position:chr25:23917700-23917967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 160

               
               
               Conread position:533-806
               
               
               Cow position:chr25:38981960-38982222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:533-808
               
               
               Cow position:chr25:28188091-28187816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):25, 139

               
               
               Conread position:533-812
               
               
               Cow position:chr25:15273546-15273806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:533-845
               
               
               Cow position:chr25:15714742-15715039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:533-845
               
               
               Cow position:chr25:30279346-30279027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):262, 13

               
               
               Conread position:533-846
               
               
               Cow position:chr25:16064746-16065050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):24, 189

               
               
               Conread position:533-850
               
               
               Cow position:chr25:788122-788429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:533-852
               
               
               Cow position:chr25:6464177-6463854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 197

               
               
               Conread position:533-852
               
               
               Cow position:chr25:20348716-20349048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 240

               
               
               Conread position:533-852
               
               
               Cow position:chr25:26133895-26134220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 103

               
               
               Conread position:533-859
               
               
               Cow position:chr25:2624666-2624975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 58

               
               
               Conread position:533-860
               
               
               Cow position:chr25:7007772-7008102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):111, 60

               
               
               Conread position:533-860
               
               
               Cow position:chr25:11661959-11661648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):69, 107

               
               
               Conread position:533-861
               
               
               Cow position:chr25:7641593-7641272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):33, 28

               
               
               Conread position:533-861
               
               
               Cow position:chr25:23245152-23244821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 114

               
               
               Conread position:533-861
               
               
               Cow position:chr25:26523822-26524145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):73, 82

               
               
               Conread position:533-861
               
               
               Cow position:chr25:30852614-30852948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):88, 54

               
               
               Conread position:533-861
               
               
               Cow position:chr25:41151103-41150781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 99

               
               
               Conread position:533-862
               
               
               Cow position:chr25:2414676-2414981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):119, 62

               
               
               Conread position:533-862
               
               
               Cow position:chr25:3992651-3992964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):155, 49

               
               
               Conread position:533-862
               
               
               Cow position:chr25:4521977-4521657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):51, 47

               
               
               Conread position:533-862
               
               
               Cow position:chr25:7216688-7217001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):66, 62

               
               
               Conread position:533-862
               
               
               Cow position:chr25:7750313-7750631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr25:14512968-14513290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):69, 232

               
               
               Conread position:533-862
               
               
               Cow position:chr25:14791611-14791938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):66, 182

               
               
               Conread position:533-862
               
               
               Cow position:chr25:16319273-16318966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):66, 37

               
               
               Conread position:533-862
               
               
               Cow position:chr25:16921933-16921609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):221, 55

               
               
               Conread position:533-862
               
               
               Cow position:chr25:17566442-17566775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):32, 120

               
               
               Conread position:533-862
               
               
               Cow position:chr25:17658470-17658796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):34, 51

               
               
               Conread position:533-862
               
               
               Cow position:chr25:19129710-19130038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 118

               
               
               Conread position:533-862
               
               
               Cow position:chr25:20023532-20023210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):84, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr25:20047363-20047694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr25:20785727-20785403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:238
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:533-862
               
               
               Cow position:chr25:21191348-21191661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):66, 47

               
               
               Conread position:533-862
               
               
               Cow position:chr25:21668103-21668432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):64, 253

               
               
               Conread position:533-862
               
               
               Cow position:chr25:26089957-26089643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):101, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr25:26679085-26679411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 116

               
               
               Conread position:533-862
               
               
               Cow position:chr25:26700894-26701204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr25:33550366-33550695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 42

               
               
               Conread position:533-862
               
               
               Cow position:chr25:36081734-36082051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:533-862
               
               
               Cow position:chr25:36746585-36746264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):257, 59

               
               
               Conread position:533-864
               
               
               Cow position:chr25:11585379-11585715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):66, 32

               
               
               Conread position:533-864
               
               
               Cow position:chr25:19679203-19679538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:533-864
               
               
               Cow position:chr25:21193083-21192755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):48, 154

               
               
               Conread position:533-864
               
               
               Cow position:chr25:23829262-23828944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):111, 31

               
               
               Conread position:533-864
               
               
               Cow position:chr25:35347765-35348092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 118

               
               
               Conread position:534-689
               
               
               Cow position:chr25:11054763-11054916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 78

               
               
               Conread position:534-707
               
               
               Cow position:chr25:9642215-9642388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):65, 31

               
               
               Conread position:534-787
               
               
               Cow position:chr25:12319489-12319243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):65, 182

               
               
               Conread position:534-854
               
               
               Cow position:chr25:7380982-7380662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):12, 97

               
               
               Conread position:534-861
               
               
               Cow position:chr25:24669578-24669269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):65, 126

               
               
               Conread position:534-862
               
               
               Cow position:chr25:9990234-9989918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):268, 63

               
               
               Conread position:534-862
               
               
               Cow position:chr25:13443551-13443223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):68, 27

               
               
               Conread position:534-862
               
               
               Cow position:chr25:35612445-35612116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):220, 60

               
               
               Conread position:534-862
               
               
               Cow position:chr25:36835566-36835248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 56

               
               
               Conread position:534-864
               
               
               Cow position:chr25:8120638-8120967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):20, 89

               
               
               Conread position:535-748
               
               
               Cow position:chr25:15377187-15377397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):64, 55

               
               
               Conread position:535-799
               
               
               Cow position:chr25:27531413-27531151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):64, 56

               
               
               Conread position:535-860
               
               
               Cow position:chr25:34979008-34978675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):96, 64

               
               
               Conread position:535-862
               
               
               Cow position:chr25:7673139-7673491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:535-862
               
               
               Cow position:chr25:12609204-12609527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):238, 64

               
               
               Conread position:535-862
               
               
               Cow position:chr25:23053418-23053747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):23, 89

               
               
               Conread position:535-862
               
               
               Cow position:chr25:33686820-33686498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 28

               
               
               Conread position:536-708
               
               
               Cow position:chr25:7801000-7801172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):61, 49

               
               
               Conread position:536-862
               
               
               Cow position:chr25:22315063-22315388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 60

               
               
               Conread position:536-862
               
               
               Cow position:chr25:33557135-33557450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:536-864
               
               
               Cow position:chr25:20523370-20523052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:537-845
               
               
               Cow position:chr25:9843039-9843350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):66, 14

               
               
               Conread position:537-864
               
               
               Cow position:chr25:4245551-4245851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:539-807
               
               
               Cow position:chr25:34169817-34170074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:539-862
               
               
               Cow position:chr25:26136960-26136636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):21, 110

               
               
               Conread position:540-745
               
               
               Cow position:chr25:24051827-24052034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):59, 70

               
               
               Conread position:541-782
               
               
               Cow position:chr25:11436941-11436702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):61, 40

               
               
               Conread position:541-845
               
               
               Cow position:chr25:15634611-15634299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):24, 210

               
               
               Conread position:541-848
               
               
               Cow position:chr25:18294452-18294141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):24, 86

               
               
               Conread position:541-857
               
               
               Cow position:chr25:17342318-17342640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):24, 227

               
               
               Conread position:541-862
               
               
               Cow position:chr25:12510144-12509837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:541-862
               
               
               Cow position:chr25:19364193-19363876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:541-862
               
               
               Cow position:chr25:22756474-22756796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):17, 108

               
               
               Conread position:542-862
               
               
               Cow position:chr25:15410049-15409738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 61

               
               
               Conread position:543-736
               
               
               Cow position:chr25:7449675-7449859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:543-808
               
               
               Cow position:chr25:22531152-22531410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:543-843
               
               
               Cow position:chr25:24572936-24573228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):56, 67

               
               
               Conread position:543-860
               
               
               Cow position:chr25:11051397-11051704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:543-861
               
               
               Cow position:chr25:6683195-6682867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):230, 55

               
               
               Conread position:543-861
               
               
               Cow position:chr25:18202059-18201746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):24, 104

               
               
               Conread position:544-862
               
               
               Cow position:chr25:21893204-21893518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:549-862
               
               
               Cow position:chr25:6292440-6292753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 100

               
               
               Conread position:550-847
               
               
               Cow position:chr25:33457604-33457898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):49, 83

               
               
               Conread position:556-864
               
               
               Cow position:chr25:30816766-30817078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:557-862
               
               
               Cow position:chr25:11433072-11432768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 226

               
               
               Conread position:557-862
               
               
               Cow position:chr25:17119626-17119928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):42, 65

               
               
               Conread position:564-737
               
               
               Cow position:chr25:26642471-26642647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:565-861
               
               
               Cow position:chr25:36872251-36872546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):34, 87

               
               
               Conread position:568-862
               
               
               Cow position:chr25:25716544-25716829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:589-845
               
               
               Cow position:chr25:7799466-7799721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):13, 50

               
               
               Conread position:589-864
               
               
               Cow position:chr25:12305189-12305465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):10, 73

               
               
               Conread position:590-806
               
               
               Cow position:chr25:23745171-23745387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 167

               
               
               Conread position:590-854
               
               
               Cow position:chr25:12806958-12807219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 57

               
               
               Conread position:598-809
               
               
               Cow position:chr25:23504970-23505184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 185

               
               
               Conread position:598-823
               
               
               Cow position:chr25:40931198-40931417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:604-860
               
               
               Cow position:chr25:19478602-19478872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:608-862
               
               
               Cow position:chr25:1840254-1840505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):44, 177

               
               
               Conread position:609-862
               
               
               Cow position:chr25:26306272-26306019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):143, 148

               
               
               Conread position:631-862
               
               
               Cow position:chr25:35339235-35339006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 20

               
               
               Conread position:632-864
               
               
               Cow position:chr25:22348508-22348272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:633-796
               
               
               Cow position:chr25:18810300-18810464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):138, 16

               
               
               Conread position:633-861
               
               
               Cow position:chr25:22298594-22298815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:638-862
               
               
               Cow position:chr25:13826398-13826615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):31, 11

               
               
               Conread position:640-864
               
               
               Cow position:chr25:35109306-35109092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:641-862
               
               
               Cow position:chr25:18288805-18288586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):5, 60

               
               
               Conread position:652-860
               
               
               Cow position:chr25:13222875-13223080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:660-862
               
               
               Cow position:chr25:20202896-20203092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:662-823
               
               
               Cow position:chr25:15463572-15463731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:662-845
               
               
               Cow position:chr25:9107539-9107363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:662-862
               
               
               Cow position:chr25:36873348-36873153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:663-860
               
               
               Cow position:chr25:13823733-13823537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:664-860
               
               
               Cow position:chr25:36873069-36872873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:664-862
               
               
               Cow position:chr25:9574143-9573951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:673-862
               
               
               Cow position:chr25:31657281-31657096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:680-859
               
               
               Cow position:chr25:8347655-8347834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):128, 96

               
               
               Conread position:680-862
               
               
               Cow position:chr25:11060135-11060319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):120, 100

               
               
               Conread position:681-862
               
               
               Cow position:chr25:24115312-24115131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:685-862
               
               
               Cow position:chr25:15349897-15349725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:700-862
               
               
               Cow position:chr25:18934612-18934452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:701-862
               
               
               Cow position:chr25:4157222-4157063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:719-862
               
               
               Cow position:chr25:17141143-17141287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:527-862
               
               
               Cow position:chr26:32601223-32601558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):33, 55

               
               
               Conread position:530-694
               
               
               Cow position:chr26:31572125-31572282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:530-748
               
               
               Cow position:chr26:32652853-32652644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:530-774
               
               
               Cow position:chr26:16721741-16721980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):68, 9

               
               
               Conread position:530-793
               
               
               Cow position:chr26:8642816-8643076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):32, 173

               
               
               Conread position:530-807
               
               
               Cow position:chr26:19110058-19110331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:530-808
               
               
               Cow position:chr26:31605279-31605554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):69, 104

               
               
               Conread position:530-862
               
               
               Cow position:chr26:10764096-10764417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):108, 32

               
               
               Conread position:530-862
               
               
               Cow position:chr26:19446000-19446340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 59

               
               
               Conread position:530-862
               
               
               Cow position:chr26:21242974-21243289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 15

               
               
               Conread position:530-862
               
               
               Cow position:chr26:35704263-35704576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:531-862
               
               
               Cow position:chr26:16783698-16784027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 68

               
               
               Conread position:533-711
               
               
               Cow position:chr26:32013503-32013686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:533-716
               
               
               Cow position:chr26:10768035-10767855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 117

               
               
               Conread position:533-720
               
               
               Cow position:chr26:5307012-5307205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-744
               
               
               Cow position:chr26:21991977-21992188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 119

               
               
               Conread position:533-774
               
               
               Cow position:chr26:21637157-21636921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):117, 44

               
               
               Conread position:533-774
               
               
               Cow position:chr26:34847618-34847860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-788
               
               
               Cow position:chr26:22354289-22354544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):25, 114

               
               
               Conread position:533-795
               
               
               Cow position:chr26:22152101-22152362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):32, 94

               
               
               Conread position:533-804
               
               
               Cow position:chr26:8352838-8353113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:533-805
               
               
               Cow position:chr26:23315646-23315921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-807
               
               
               Cow position:chr26:8700170-8699897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):66, 35

               
               
               Conread position:533-808
               
               
               Cow position:chr26:12964820-12964549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):66, 181

               
               
               Conread position:533-808
               
               
               Cow position:chr26:25393907-25394187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):66, 116

               
               
               Conread position:533-817
               
               
               Cow position:chr26:34314565-34314847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):34, 114

               
               
               Conread position:533-821
               
               
               Cow position:chr26:23583070-23582785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):66, 114

               
               
               Conread position:533-823
               
               
               Cow position:chr26:13021269-13020982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):66, 120

               
               
               Conread position:533-843
               
               
               Cow position:chr26:6794020-6794335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 83

               
               
               Conread position:533-862
               
               
               Cow position:chr26:4585332-4585009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):29, 68

               
               
               Conread position:533-862
               
               
               Cow position:chr26:7148419-7148098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):213, 28

               
               
               Conread position:533-862
               
               
               Cow position:chr26:7642701-7642371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 102

               
               
               Conread position:533-862
               
               
               Cow position:chr26:9535394-9535716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):70, 47

               
               
               Conread position:533-862
               
               
               Cow position:chr26:16549861-16550190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:533-862
               
               
               Cow position:chr26:20260453-20260784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):24, 160

               
               
               Conread position:533-862
               
               
               Cow position:chr26:20291806-20291490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr26:26888254-26887935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 38

               
               
               Conread position:533-862
               
               
               Cow position:chr26:28251022-28251356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:533-862
               
               
               Cow position:chr26:33112506-33112183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):65, 119

               
               
               Conread position:533-862
               
               
               Cow position:chr26:33202179-33201868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr26:33253445-33253114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):24, 247

               
               
               Conread position:533-862
               
               
               Cow position:chr26:34027164-34026831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):29, 68

               
               
               Conread position:533-863
               
               
               Cow position:chr26:27491625-27491292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):66, 182

               
               
               Conread position:533-864
               
               
               Cow position:chr26:9491802-9492123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-864
               
               
               Cow position:chr26:13801991-13802313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):70, 22

               
               
               Conread position:533-864
               
               
               Cow position:chr26:34060209-34060540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 115

               
               
               Conread position:534-714
               
               
               Cow position:chr26:10747749-10747574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):65, 89

               
               
               Conread position:534-804
               
               
               Cow position:chr26:2739579-2739311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):65, 15

               
               
               Conread position:534-808
               
               
               Cow position:chr26:14175157-14175433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):65, 31

               
               
               Conread position:534-838
               
               
               Cow position:chr26:29332967-29333270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 68

               
               
               Conread position:534-860
               
               
               Cow position:chr26:12145242-12144916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 125

               
               
               Conread position:534-860
               
               
               Cow position:chr26:22892565-22892247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:534-861
               
               
               Cow position:chr26:8811007-8811332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):65, 99

               
               
               Conread position:534-862
               
               
               Cow position:chr26:647843-647520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 58

               
               
               Conread position:534-862
               
               
               Cow position:chr26:4167482-4167147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 107

               
               
               Conread position:534-862
               
               
               Cow position:chr26:14905934-14905614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):65, 189

               
               
               Conread position:534-862
               
               
               Cow position:chr26:19459556-19459899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:535-809
               
               
               Cow position:chr26:19774425-19774147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 120

               
               
               Conread position:535-862
               
               
               Cow position:chr26:18825403-18825081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):103, 65

               
               
               Conread position:535-862
               
               
               Cow position:chr26:20769733-20770053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:535-862
               
               
               Cow position:chr26:25526125-25526449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):82, 63

               
               
               Conread position:535-862
               
               
               Cow position:chr26:32897993-32897677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):64, 118

               
               
               Conread position:536-862
               
               
               Cow position:chr26:12893542-12893227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):63, 36

               
               
               Conread position:539-794
               
               
               Cow position:chr26:6475548-6475294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):60, 191

               
               
               Conread position:539-808
               
               
               Cow position:chr26:17148586-17148848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):60, 121

               
               
               Conread position:540-692
               
               
               Cow position:chr26:8341338-8341489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:540-861
               
               
               Cow position:chr26:33096679-33096353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 126

               
               
               Conread position:540-862
               
               
               Cow position:chr26:14174183-14174506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 118

               
               
               Conread position:541-753
               
               
               Cow position:chr26:18651750-18651541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):60, 93

               
               
               Conread position:541-860
               
               
               Cow position:chr26:23671298-23671619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:542-687
               
               
               Cow position:chr26:35302344-35302195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:543-845
               
               
               Cow position:chr26:32670605-32670313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):251, 54

               
               
               Conread position:543-862
               
               
               Cow position:chr26:9604445-9604758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):55, 109

               
               
               Conread position:545-862
               
               
               Cow position:chr26:31137561-31137263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):206, 46

               
               
               Conread position:550-864
               
               
               Cow position:chr26:24240569-24240889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):49, 163

               
               
               Conread position:550-864
               
               
               Cow position:chr26:34724982-34724670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):85, 49

               
               
               Conread position:565-862
               
               
               Cow position:chr26:6514750-6515035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):34, 90

               
               
               Conread position:566-835
               
               
               Cow position:chr26:678070-677806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:568-862
               
               
               Cow position:chr26:4854450-4854746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 179

               
               
               Conread position:568-862
               
               
               Cow position:chr26:29889586-29889312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:571-864
               
               
               Cow position:chr26:8307608-8307322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:575-862
               
               
               Cow position:chr26:23924766-23925046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):24, 13

               
               
               Conread position:589-862
               
               
               Cow position:chr26:14481621-14481364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):10, 63

               
               
               Conread position:598-862
               
               
               Cow position:chr26:22033424-22033680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:604-864
               
               
               Cow position:chr26:28423234-28423490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:606-808
               
               
               Cow position:chr26:32863718-32863521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:609-861
               
               
               Cow position:chr26:19591435-19591680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):137, 30

               
               
               Conread position:610-862
               
               
               Cow position:chr26:12940359-12940610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):180, 14

               
               
               Conread position:614-862
               
               
               Cow position:chr26:5836862-5836615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):177, 37

               
               
               Conread position:615-864
               
               
               Cow position:chr26:19636249-19636494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):117, 160

               
               
               Conread position:624-862
               
               
               Cow position:chr26:34560202-34559969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 63

               
               
               Conread position:624-864
               
               
               Cow position:chr26:7314586-7314833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:634-858
               
               
               Cow position:chr26:6487820-6487593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 10

               
               
               Conread position:639-862
               
               
               Cow position:chr26:1328875-1328663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:651-861
               
               
               Cow position:chr26:34611188-34610985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:653-835
               
               
               Cow position:chr26:33241884-33242065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:662-862
               
               
               Cow position:chr26:11875217-11875022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:662-862
               
               
               Cow position:chr26:31888737-31888932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:673-861
               
               
               Cow position:chr26:13863019-13862837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:674-862
               
               
               Cow position:chr26:15132653-15132843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):90, 99

               
               
               Conread position:682-862
               
               
               Cow position:chr26:33038199-33038023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:710-862
               
               
               Cow position:chr26:21319998-21320148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 44

               
               
               Conread position:519-860
               
               
               Cow position:chr27:26489794-26490133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):80, 246

               
               
               Conread position:525-862
               
               
               Cow position:chr27:30915111-30914777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:527-758
               
               
               Cow position:chr27:25380096-25379861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):72, 92

               
               
               Conread position:527-788
               
               
               Cow position:chr27:31148865-31148605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 114

               
               
               Conread position:527-808
               
               
               Cow position:chr27:20795892-20795618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):7, 67

               
               
               Conread position:527-859
               
               
               Cow position:chr27:23891044-23890706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 125

               
               
               Conread position:527-860
               
               
               Cow position:chr27:19388119-19387793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 100

               
               
               Conread position:527-860
               
               
               Cow position:chr27:28518393-28518065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):40, 67

               
               
               Conread position:527-860
               
               
               Cow position:chr27:28921795-28922123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 34

               
               
               Conread position:527-862
               
               
               Cow position:chr27:2592652-2592307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):36, 233

               
               
               Conread position:527-862
               
               
               Cow position:chr27:15454313-15453983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 7

               
               
               Conread position:527-864
               
               
               Cow position:chr27:16103909-16103579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 7

               
               
               Conread position:527-864
               
               
               Cow position:chr27:22513573-22513913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:530-794
               
               
               Cow position:chr27:26413153-26413415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):69, 103

               
               
               Conread position:530-797
               
               
               Cow position:chr27:12246757-12246487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):69, 179

               
               
               Conread position:530-808
               
               
               Cow position:chr27:7212617-7212890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:530-818
               
               
               Cow position:chr27:26959518-26959800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):212, 69

               
               
               Conread position:530-859
               
               
               Cow position:chr27:29431557-29431249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:530-862
               
               
               Cow position:chr27:27245253-27245592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):69, 138

               
               
               Conread position:530-862
               
               
               Cow position:chr27:27460475-27460808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):68, 102

               
               
               Conread position:530-864
               
               
               Cow position:chr27:16284569-16284257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):126, 69

               
               
               Conread position:531-742
               
               
               Cow position:chr27:22569871-22569673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:532-808
               
               
               Cow position:chr27:20757954-20758204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:532-862
               
               
               Cow position:chr27:26433717-26434043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):67, 26

               
               
               Conread position:533-676
               
               
               Cow position:chr27:15858993-15859134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):101, 20

               
               
               Conread position:533-691
               
               
               Cow position:chr27:28061667-28061821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-736
               
               
               Cow position:chr27:20789280-20789484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):66, 72

               
               
               Conread position:533-744
               
               
               Cow position:chr27:4829706-4829924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 47

               
               
               Conread position:533-749
               
               
               Cow position:chr27:815463-815244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:533-750
               
               
               Cow position:chr27:4835514-4835725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):113, 50

               
               
               Conread position:533-750
               
               
               Cow position:chr27:30354246-30354463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):66, 112

               
               
               Conread position:533-753
               
               
               Cow position:chr27:4812783-4813005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:533-753
               
               
               Cow position:chr27:30551094-30550868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:533-761
               
               
               Cow position:chr27:16625994-16625770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:533-774
               
               
               Cow position:chr27:1498414-1498172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 180

               
               
               Conread position:533-782
               
               
               Cow position:chr27:1123128-1122881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):63, 119

               
               
               Conread position:533-791
               
               
               Cow position:chr27:24321283-24321030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:533-793
               
               
               Cow position:chr27:20549611-20549871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):189, 245

               
               
               Conread position:533-796
               
               
               Cow position:chr27:29504550-29504812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:533-804
               
               
               Cow position:chr27:30359501-30359236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:533-805
               
               
               Cow position:chr27:27136422-27136692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):68, 99

               
               
               Conread position:533-808
               
               
               Cow position:chr27:16589618-16589877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-812
               
               
               Cow position:chr27:23472349-23472082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):104, 63

               
               
               Conread position:533-813
               
               
               Cow position:chr27:28271049-28271334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):24, 105

               
               
               Conread position:533-831
               
               
               Cow position:chr27:22418671-22418963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):66, 14

               
               
               Conread position:533-838
               
               
               Cow position:chr27:20481280-20481562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):41, 67

               
               
               Conread position:533-843
               
               
               Cow position:chr27:1768530-1768833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:533-852
               
               
               Cow position:chr27:6500158-6499838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):32, 101

               
               
               Conread position:533-853
               
               
               Cow position:chr27:20067881-20068196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):274, 63

               
               
               Conread position:533-854
               
               
               Cow position:chr27:31230996-31231301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):182, 60

               
               
               Conread position:533-857
               
               
               Cow position:chr27:8168332-8168646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 102

               
               
               Conread position:533-858
               
               
               Cow position:chr27:26239122-26238798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):109, 66

               
               
               Conread position:533-858
               
               
               Cow position:chr27:27632513-27632819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:533-860
               
               
               Cow position:chr27:22220647-22220322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):66, 24

               
               
               Conread position:533-861
               
               
               Cow position:chr27:2957498-2957188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):108, 76

               
               
               Conread position:533-861
               
               
               Cow position:chr27:4858549-4858848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-861
               
               
               Cow position:chr27:14670287-14670609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):66, 104

               
               
               Conread position:533-861
               
               
               Cow position:chr27:18739485-18739145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):24, 231

               
               
               Conread position:533-861
               
               
               Cow position:chr27:19685614-19685939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 254

               
               
               Conread position:533-861
               
               
               Cow position:chr27:20283739-20283415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):65, 101

               
               
               Conread position:533-861
               
               
               Cow position:chr27:26226193-26226517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):32, 11

               
               
               Conread position:533-861
               
               
               Cow position:chr27:26865023-26865337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):66, 77

               
               
               Conread position:533-861
               
               
               Cow position:chr27:26999322-26999652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):28, 56

               
               
               Conread position:533-862
               
               
               Cow position:chr27:427066-426740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 92

               
               
               Conread position:533-862
               
               
               Cow position:chr27:7412476-7412164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):40, 68

               
               
               Conread position:533-862
               
               
               Cow position:chr27:11435224-11435557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):35, 101

               
               
               Conread position:533-862
               
               
               Cow position:chr27:12596862-12596552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):66, 110

               
               
               Conread position:533-862
               
               
               Cow position:chr27:13875828-13875503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):66, 145

               
               
               Conread position:533-862
               
               
               Cow position:chr27:15408946-15409255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr27:15867495-15867163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):32, 92

               
               
               Conread position:533-862
               
               
               Cow position:chr27:17397353-17397681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 246

               
               
               Conread position:533-862
               
               
               Cow position:chr27:19546409-19546751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 122

               
               
               Conread position:533-862
               
               
               Cow position:chr27:19718019-19717668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):66, 76

               
               
               Conread position:533-862
               
               
               Cow position:chr27:22171397-22171072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 182

               
               
               Conread position:533-862
               
               
               Cow position:chr27:22386967-22386658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:533-862
               
               
               Cow position:chr27:22547311-22547618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:533-862
               
               
               Cow position:chr27:23594413-23594089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):274, 63

               
               
               Conread position:533-862
               
               
               Cow position:chr27:28206891-28206574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr27:28931694-28932032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 230

               
               
               Conread position:533-862
               
               
               Cow position:chr27:30890384-30890071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:533-864
               
               
               Cow position:chr27:11151773-11151439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):34, 241

               
               
               Conread position:533-864
               
               
               Cow position:chr27:15668673-15669006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 89

               
               
               Conread position:533-864
               
               
               Cow position:chr27:17331596-17331260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):66, 182

               
               
               Conread position:533-864
               
               
               Cow position:chr27:26426302-26425991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):239, 66

               
               
               Conread position:533-864
               
               
               Cow position:chr27:29493815-29494130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):137, 69

               
               
               Conread position:534-690
               
               
               Cow position:chr27:16871817-16871975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):65, 116

               
               
               Conread position:534-722
               
               
               Cow position:chr27:2683046-2683236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 120

               
               
               Conread position:534-774
               
               
               Cow position:chr27:20553816-20553589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:534-774
               
               
               Cow position:chr27:26151117-26150875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 75

               
               
               Conread position:534-780
               
               
               Cow position:chr27:4805813-4806050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:534-785
               
               
               Cow position:chr27:24014644-24014893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):233, 75

               
               
               Conread position:534-808
               
               
               Cow position:chr27:6550553-6550289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):65, 124

               
               
               Conread position:534-857
               
               
               Cow position:chr27:7935059-7935383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 105

               
               
               Conread position:534-861
               
               
               Cow position:chr27:28496282-28496600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):45, 86

               
               
               Conread position:534-862
               
               
               Cow position:chr27:299291-299604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:534-862
               
               
               Cow position:chr27:8353569-8353265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):65, 55

               
               
               Conread position:534-862
               
               
               Cow position:chr27:8629777-8630103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):65, 124

               
               
               Conread position:534-862
               
               
               Cow position:chr27:10307202-10307533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):31, 70

               
               
               Conread position:534-862
               
               
               Cow position:chr27:16786919-16786601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):25, 66

               
               
               Conread position:534-862
               
               
               Cow position:chr27:17994846-17995176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):24, 115

               
               
               Conread position:534-862
               
               
               Cow position:chr27:18558456-18558128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 12

               
               
               Conread position:534-862
               
               
               Cow position:chr27:22035281-22035601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 68

               
               
               Conread position:534-862
               
               
               Cow position:chr27:30868646-30868981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):65, 38

               
               
               Conread position:535-783
               
               
               Cow position:chr27:20092743-20092986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):102, 48

               
               
               Conread position:535-798
               
               
               Cow position:chr27:8263239-8263503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):30, 66

               
               
               Conread position:535-802
               
               
               Cow position:chr27:4673114-4672843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 255

               
               
               Conread position:535-804
               
               
               Cow position:chr27:20641246-20641507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):110, 56

               
               
               Conread position:535-809
               
               
               Cow position:chr27:6074016-6073755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):55, 89

               
               
               Conread position:535-809
               
               
               Cow position:chr27:23483320-23483050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):64, 29

               
               
               Conread position:535-860
               
               
               Cow position:chr27:21991251-21990915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):22, 190

               
               
               Conread position:535-861
               
               
               Cow position:chr27:27438409-27438737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):30, 94

               
               
               Conread position:535-862
               
               
               Cow position:chr27:10979955-10979630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):32, 46

               
               
               Conread position:535-862
               
               
               Cow position:chr27:11480534-11480868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):27, 69

               
               
               Conread position:535-862
               
               
               Cow position:chr27:15865700-15865380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):22, 5

               
               
               Conread position:535-862
               
               
               Cow position:chr27:16705342-16705023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):28, 59

               
               
               Conread position:535-862
               
               
               Cow position:chr27:19500139-19500466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 68

               
               
               Conread position:535-862
               
               
               Cow position:chr27:20354679-20354370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 82

               
               
               Conread position:535-862
               
               
               Cow position:chr27:21978041-21978373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):30, 106

               
               
               Conread position:536-859
               
               
               Cow position:chr27:22454684-22455020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):63, 114

               
               
               Conread position:536-861
               
               
               Cow position:chr27:24331819-24331485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 46

               
               
               Conread position:536-862
               
               
               Cow position:chr27:23511084-23510745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):63, 194

               
               
               Conread position:536-864
               
               
               Cow position:chr27:21669029-21669344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 67

               
               
               Conread position:536-864
               
               
               Cow position:chr27:26643772-26643471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:537-862
               
               
               Cow position:chr27:28001716-28002033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):30, 216

               
               
               Conread position:538-848
               
               
               Cow position:chr27:6541721-6541419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):61, 96

               
               
               Conread position:539-845
               
               
               Cow position:chr27:20828621-20828920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:539-862
               
               
               Cow position:chr27:435326-435002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):60, 76

               
               
               Conread position:539-862
               
               
               Cow position:chr27:18646054-18646379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):19, 61

               
               
               Conread position:539-862
               
               
               Cow position:chr27:27856422-27856109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:540-846
               
               
               Cow position:chr27:11536010-11536321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 40

               
               
               Conread position:541-796
               
               
               Cow position:chr27:16478251-16478501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):67, 31

               
               
               Conread position:541-831
               
               
               Cow position:chr27:26506812-26506544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):58, 22

               
               
               Conread position:542-864
               
               
               Cow position:chr27:16780956-16780628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):56, 177

               
               
               Conread position:543-861
               
               
               Cow position:chr27:27694684-27695004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):56, 91

               
               
               Conread position:543-862
               
               
               Cow position:chr27:26424499-26424806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):59, 85

               
               
               Conread position:548-862
               
               
               Cow position:chr27:15378396-15378711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):54, 61

               
               
               Conread position:554-862
               
               
               Cow position:chr27:4944442-4944736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:556-864
               
               
               Cow position:chr27:590693-591001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):110, 50

               
               
               Conread position:559-862
               
               
               Cow position:chr27:23452530-23452233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 74

               
               
               Conread position:562-862
               
               
               Cow position:chr27:29164833-29164545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):40, 47

               
               
               Conread position:566-862
               
               
               Cow position:chr27:22489342-22489042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 57

               
               
               Conread position:568-753
               
               
               Cow position:chr27:8405763-8405944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):31, 71

               
               
               Conread position:568-861
               
               
               Cow position:chr27:16965635-16965346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 57

               
               
               Conread position:582-861
               
               
               Cow position:chr27:23107853-23108131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):21, 116

               
               
               Conread position:585-862
               
               
               Cow position:chr27:23485258-23484986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):14, 131

               
               
               Conread position:585-862
               
               
               Cow position:chr27:23559987-23560259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:587-862
               
               
               Cow position:chr27:29593585-29593858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):12, 58

               
               
               Conread position:593-862
               
               
               Cow position:chr27:12425325-12425058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:598-862
               
               
               Cow position:chr27:20517690-20517422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:607-861
               
               
               Cow position:chr27:20897001-20897249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:614-861
               
               
               Cow position:chr27:19509030-19508783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:617-853
               
               
               Cow position:chr27:28478594-28478363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:618-862
               
               
               Cow position:chr27:31210559-31210320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:633-862
               
               
               Cow position:chr27:27055284-27055066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:640-862
               
               
               Cow position:chr27:26617396-26617185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:642-862
               
               
               Cow position:chr27:15002988-15003209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:645-858
               
               
               Cow position:chr27:7343442-7343654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 125

               
               
               Conread position:649-862
               
               
               Cow position:chr27:18435150-18435360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):5, 128

               
               
               Conread position:655-862
               
               
               Cow position:chr27:7425212-7425418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:658-862
               
               
               Cow position:chr27:24223927-24223725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):13, 66

               
               
               Conread position:661-862
               
               
               Cow position:chr27:6106670-6106477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:662-807
               
               
               Cow position:chr27:788828-788970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:662-862
               
               
               Cow position:chr27:26437152-26437350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:662-864
               
               
               Cow position:chr27:31169141-31169337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):97, 89

               
               
               Conread position:663-862
               
               
               Cow position:chr27:6319887-6319693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:664-862
               
               
               Cow position:chr27:26323415-26323212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):126, 19

               
               
               Conread position:664-864
               
               
               Cow position:chr27:23957483-23957286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):98, 37

               
               
               Conread position:671-862
               
               
               Cow position:chr27:19576363-19576553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):183, 105

               
               
               Conread position:674-861
               
               
               Cow position:chr27:26504259-26504075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:677-858
               
               
               Cow position:chr27:11134040-11133862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:677-862
               
               
               Cow position:chr27:15859343-15859527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):120, 39

               
               
               Conread position:680-862
               
               
               Cow position:chr27:1184226-1184403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:681-862
               
               
               Cow position:chr27:2949377-2949546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:699-862
               
               
               Cow position:chr27:27449953-27450113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:703-859
               
               
               Cow position:chr27:31183504-31183344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:705-862
               
               
               Cow position:chr27:9253187-9253342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:707-862
               
               
               Cow position:chr27:178787-178633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):52, 47

               
               
               Conread position:712-862
               
               
               Cow position:chr27:21661055-21660906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 60

               
               
               Conread position:526-790
               
               
               Cow position:chr28:21598397-21598130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):8, 108

               
               
               Conread position:527-714
               
               
               Cow position:chr28:5904592-5904776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 7

               
               
               Conread position:527-861
               
               
               Cow position:chr28:24082127-24082460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 7

               
               
               Conread position:527-862
               
               
               Cow position:chr28:4282631-4282298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):33, 51

               
               
               Conread position:527-862
               
               
               Cow position:chr28:13474159-13474490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 134

               
               
               Conread position:527-862
               
               
               Cow position:chr28:16370219-16369898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 74

               
               
               Conread position:527-862
               
               
               Cow position:chr28:16919301-16918983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:527-862
               
               
               Cow position:chr28:25056829-25057147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:528-807
               
               
               Cow position:chr28:29199586-29199865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):107, 71

               
               
               Conread position:530-711
               
               
               Cow position:chr28:4587961-4588141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):69, 79

               
               
               Conread position:530-749
               
               
               Cow position:chr28:14512384-14512612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:530-750
               
               
               Cow position:chr28:25806433-25806653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 123

               
               
               Conread position:530-774
               
               
               Cow position:chr28:18591135-18591374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):96, 69

               
               
               Conread position:530-776
               
               
               Cow position:chr28:2862727-2862974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):69, 95

               
               
               Conread position:530-781
               
               
               Cow position:chr28:8022247-8021992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:530-794
               
               
               Cow position:chr28:26922503-26922246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):37, 12

               
               
               Conread position:530-803
               
               
               Cow position:chr28:2960970-2960696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):162, 68

               
               
               Conread position:530-804
               
               
               Cow position:chr28:14649210-14649477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):69, 138

               
               
               Conread position:530-804
               
               
               Cow position:chr28:19026150-19025871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:530-844
               
               
               Cow position:chr28:34133724-34134031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):47, 53

               
               
               Conread position:530-860
               
               
               Cow position:chr28:33884270-33884591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):101, 67

               
               
               Conread position:530-862
               
               
               Cow position:chr28:4834980-4834652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 78

               
               
               Conread position:531-777
               
               
               Cow position:chr28:21380741-21380990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):68, 123

               
               
               Conread position:531-862
               
               
               Cow position:chr28:4090185-4089868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):68, 102

               
               
               Conread position:532-862
               
               
               Cow position:chr28:3449163-3449500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:533-677
               
               
               Cow position:chr28:13290267-13290122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):66, 75

               
               
               Conread position:533-686
               
               
               Cow position:chr28:2905445-2905591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:533-688
               
               
               Cow position:chr28:3751182-3751332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):126, 49

               
               
               Conread position:533-688
               
               
               Cow position:chr28:7980550-7980399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):104, 65

               
               
               Conread position:533-707
               
               
               Cow position:chr28:7608115-7607938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-711
               
               
               Cow position:chr28:3256662-3256839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:533-750
               
               
               Cow position:chr28:8408599-8408814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:533-753
               
               
               Cow position:chr28:4536321-4536542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:533-754
               
               
               Cow position:chr28:23676005-23676222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):69, 76

               
               
               Conread position:533-762
               
               
               Cow position:chr28:4841527-4841298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):98, 59

               
               
               Conread position:533-770
               
               
               Cow position:chr28:18186419-18186656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):66, 130

               
               
               Conread position:533-782
               
               
               Cow position:chr28:3169327-3169077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):66, 16

               
               
               Conread position:533-783
               
               
               Cow position:chr28:15043996-15043749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:533-783
               
               
               Cow position:chr28:32365711-32365960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):66, 47

               
               
               Conread position:533-790
               
               
               Cow position:chr28:23007869-23007610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-792
               
               
               Cow position:chr28:5128861-5128605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):214, 69

               
               
               Conread position:533-796
               
               
               Cow position:chr28:616249-616506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:533-797
               
               
               Cow position:chr28:33163599-33163338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):69, 175

               
               
               Conread position:533-800
               
               
               Cow position:chr28:11752276-11752009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):104, 64

               
               
               Conread position:533-808
               
               
               Cow position:chr28:2132054-2131788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):69, 9

               
               
               Conread position:533-808
               
               
               Cow position:chr28:6971479-6971210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:533-808
               
               
               Cow position:chr28:26220120-26220392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):69, 201

               
               
               Conread position:533-812
               
               
               Cow position:chr28:25596497-25596772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):103, 59

               
               
               Conread position:533-822
               
               
               Cow position:chr28:20313137-20313429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):32, 115

               
               
               Conread position:533-838
               
               
               Cow position:chr28:11687164-11686851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):69, 169

               
               
               Conread position:533-844
               
               
               Cow position:chr28:4809662-4809948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:533-852
               
               
               Cow position:chr28:4440168-4440480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):32, 50

               
               
               Conread position:533-854
               
               
               Cow position:chr28:16211227-16210918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:533-857
               
               
               Cow position:chr28:657584-657279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):176, 66

               
               
               Conread position:533-859
               
               
               Cow position:chr28:5144657-5144326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):24, 56

               
               
               Conread position:533-859
               
               
               Cow position:chr28:20409257-20409579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):99, 66

               
               
               Conread position:533-861
               
               
               Cow position:chr28:4884398-4884063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):105, 258

               
               
               Conread position:533-862
               
               
               Cow position:chr28:3024047-3023725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):119, 63

               
               
               Conread position:533-862
               
               
               Cow position:chr28:3144027-3143694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):27, 199

               
               
               Conread position:533-862
               
               
               Cow position:chr28:3492920-3492596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:533-862
               
               
               Cow position:chr28:4070834-4071149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 107

               
               
               Conread position:533-862
               
               
               Cow position:chr28:4158823-4159155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr28:4308044-4307702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):27, 231

               
               
               Conread position:533-862
               
               
               Cow position:chr28:4643898-4643579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):221, 31

               
               
               Conread position:533-862
               
               
               Cow position:chr28:5236734-5236404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 65

               
               
               Conread position:533-862
               
               
               Cow position:chr28:5437223-5436895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 204

               
               
               Conread position:533-862
               
               
               Cow position:chr28:7009110-7008790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 43

               
               
               Conread position:533-862
               
               
               Cow position:chr28:8347595-8347925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):33, 115

               
               
               Conread position:533-862
               
               
               Cow position:chr28:9285509-9285186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):66, 179

               
               
               Conread position:533-862
               
               
               Cow position:chr28:9426487-9426161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):23, 51

               
               
               Conread position:533-862
               
               
               Cow position:chr28:9636588-9636266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):50, 71

               
               
               Conread position:533-862
               
               
               Cow position:chr28:9684452-9684146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):105, 42

               
               
               Conread position:533-862
               
               
               Cow position:chr28:11422946-11422628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:533-862
               
               
               Cow position:chr28:11426677-11426357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 117

               
               
               Conread position:533-862
               
               
               Cow position:chr28:11829073-11828768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):257, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr28:11884655-11884340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):66, 118

               
               
               Conread position:533-862
               
               
               Cow position:chr28:12964435-12964773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):240, 15

               
               
               Conread position:533-862
               
               
               Cow position:chr28:14997930-14998255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):69, 13

               
               
               Conread position:533-862
               
               
               Cow position:chr28:16204464-16204139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):66, 103

               
               
               Conread position:533-862
               
               
               Cow position:chr28:20124648-20124972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):65, 115

               
               
               Conread position:533-862
               
               
               Cow position:chr28:21502259-21502573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):27, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr28:21868320-21868648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:533-862
               
               
               Cow position:chr28:23460013-23460335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):32, 72

               
               
               Conread position:533-862
               
               
               Cow position:chr28:24966256-24966577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):105, 56

               
               
               Conread position:533-862
               
               
               Cow position:chr28:26982878-26982545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:533-862
               
               
               Cow position:chr28:29416848-29416534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):131, 47

               
               
               Conread position:533-862
               
               
               Cow position:chr28:30327226-30326910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):66, 181

               
               
               Conread position:533-862
               
               
               Cow position:chr28:30746863-30746547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):66, 90

               
               
               Conread position:533-864
               
               
               Cow position:chr28:10863917-10863602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):65, 48

               
               
               Conread position:533-864
               
               
               Cow position:chr28:11527394-11527066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):69, 76

               
               
               Conread position:533-864
               
               
               Cow position:chr28:22345884-22346215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 75

               
               
               Conread position:533-864
               
               
               Cow position:chr28:30937798-30937490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:534-689
               
               
               Cow position:chr28:10762525-10762680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 100

               
               
               Conread position:534-732
               
               
               Cow position:chr28:7751431-7751239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):118, 59

               
               
               Conread position:534-739
               
               
               Cow position:chr28:7549193-7548989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):65, 20

               
               
               Conread position:534-787
               
               
               Cow position:chr28:26719216-26719460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 100

               
               
               Conread position:534-790
               
               
               Cow position:chr28:7865190-7865449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:534-845
               
               
               Cow position:chr28:4016404-4016700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:534-854
               
               
               Cow position:chr28:22332401-22332713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 81

               
               
               Conread position:534-859
               
               
               Cow position:chr28:5684576-5684888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:534-860
               
               
               Cow position:chr28:23296190-23296508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 17

               
               
               Conread position:534-862
               
               
               Cow position:chr28:751094-751419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 119

               
               
               Conread position:534-862
               
               
               Cow position:chr28:6091229-6091547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):133, 64

               
               
               Conread position:534-862
               
               
               Cow position:chr28:8787405-8787730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 129

               
               
               Conread position:534-862
               
               
               Cow position:chr28:16346661-16346347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:534-862
               
               
               Cow position:chr28:21844825-21845142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:534-862
               
               
               Cow position:chr28:34230096-34230422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 91

               
               
               Conread position:534-863
               
               
               Cow position:chr28:26743484-26743823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 118

               
               
               Conread position:534-864
               
               
               Cow position:chr28:34430557-34430230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):24, 115

               
               
               Conread position:535-745
               
               
               Cow position:chr28:10534065-10533860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):64, 30

               
               
               Conread position:535-862
               
               
               Cow position:chr28:3746072-3746388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):155, 64

               
               
               Conread position:535-862
               
               
               Cow position:chr28:11585338-11585018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):68, 250

               
               
               Conread position:536-804
               
               
               Cow position:chr28:33051896-33052168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):66, 247

               
               
               Conread position:536-861
               
               
               Cow position:chr28:8140350-8140674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):63, 112

               
               
               Conread position:537-854
               
               
               Cow position:chr28:3740753-3741052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 24

               
               
               Conread position:538-861
               
               
               Cow position:chr28:5273568-5273237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):20, 65

               
               
               Conread position:539-767
               
               
               Cow position:chr28:2872788-2873016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):60, 70

               
               
               Conread position:539-788
               
               
               Cow position:chr28:10172539-10172299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 33

               
               
               Conread position:539-859
               
               
               Cow position:chr28:12430478-12430795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 82

               
               
               Conread position:539-862
               
               
               Cow position:chr28:3914581-3914896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):16, 239

               
               
               Conread position:539-862
               
               
               Cow position:chr28:11346614-11346298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):18, 93

               
               
               Conread position:539-862
               
               
               Cow position:chr28:27218195-27218516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):60, 93

               
               
               Conread position:539-864
               
               
               Cow position:chr28:31841464-31841153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):220, 60

               
               
               Conread position:540-808
               
               
               Cow position:chr28:27161460-27161191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):17, 114

               
               
               Conread position:540-851
               
               
               Cow position:chr28:7512716-7512401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):27, 128

               
               
               Conread position:540-852
               
               
               Cow position:chr28:4914226-4913911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 130

               
               
               Conread position:540-862
               
               
               Cow position:chr28:5074638-5074330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):58, 117

               
               
               Conread position:540-864
               
               
               Cow position:chr28:3078809-3078503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):212, 58

               
               
               Conread position:541-861
               
               
               Cow position:chr28:15263848-15263528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 188

               
               
               Conread position:541-864
               
               
               Cow position:chr28:11866792-11866475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 42

               
               
               Conread position:542-862
               
               
               Cow position:chr28:12672587-12672270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):145, 55

               
               
               Conread position:542-864
               
               
               Cow position:chr28:22323141-22323452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):16, 104

               
               
               Conread position:542-864
               
               
               Cow position:chr28:22813139-22813441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:543-862
               
               
               Cow position:chr28:22308523-22308835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):16, 57

               
               
               Conread position:544-807
               
               
               Cow position:chr28:32174507-32174764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):55, 18

               
               
               Conread position:547-806
               
               
               Cow position:chr28:28163965-28164223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):51, 144

               
               
               Conread position:547-843
               
               
               Cow position:chr28:5204071-5204362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 238

               
               
               Conread position:547-862
               
               
               Cow position:chr28:11079185-11079491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):52, 101

               
               
               Conread position:553-862
               
               
               Cow position:chr28:25128768-25129075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 167

               
               
               Conread position:555-862
               
               
               Cow position:chr28:5577412-5577723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):45, 96

               
               
               Conread position:556-842
               
               
               Cow position:chr28:4881349-4881072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 90

               
               
               Conread position:556-862
               
               
               Cow position:chr28:19564338-19564044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:558-807
               
               
               Cow position:chr28:19222259-19222013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:565-796
               
               
               Cow position:chr28:16246166-16245941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):73, 37

               
               
               Conread position:566-852
               
               
               Cow position:chr28:12363263-12362979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 195

               
               
               Conread position:567-862
               
               
               Cow position:chr28:17071232-17071531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 199

               
               
               Conread position:585-862
               
               
               Cow position:chr28:4045769-4046035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:585-862
               
               
               Cow position:chr28:7350574-7350841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):20, 66

               
               
               Conread position:585-862
               
               
               Cow position:chr28:10589106-10588842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):14, 9

               
               
               Conread position:586-862
               
               
               Cow position:chr28:4181921-4182192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):17, 60

               
               
               Conread position:587-809
               
               
               Cow position:chr28:12070154-12070368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:587-862
               
               
               Cow position:chr28:5139078-5138808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):12, 172

               
               
               Conread position:601-862
               
               
               Cow position:chr28:4013020-4013274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):34, 50

               
               
               Conread position:602-862
               
               
               Cow position:chr28:3411057-3410798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):51, 179

               
               
               Conread position:605-862
               
               
               Cow position:chr28:7619215-7618969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):33, 47

               
               
               Conread position:605-862
               
               
               Cow position:chr28:10977780-10978029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):125, 54

               
               
               Conread position:606-844
               
               
               Cow position:chr28:26531343-26531105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:609-861
               
               
               Cow position:chr28:3445541-3445290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):187, 53

               
               
               Conread position:615-862
               
               
               Cow position:chr28:777619-777867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):23, 173

               
               
               Conread position:616-774
               
               
               Cow position:chr28:2762142-2762299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:628-861
               
               
               Cow position:chr28:20397410-20397176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):166, 25

               
               
               Conread position:639-861
               
               
               Cow position:chr28:12991105-12991325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):54, 151

               
               
               Conread position:648-862
               
               
               Cow position:chr28:9705631-9705847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):152, 68

               
               
               Conread position:651-862
               
               
               Cow position:chr28:8304228-8304433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):41, 60

               
               
               Conread position:654-862
               
               
               Cow position:chr28:16879557-16879759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:657-845
               
               
               Cow position:chr28:8396322-8396503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:661-862
               
               
               Cow position:chr28:17680613-17680816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:661-864
               
               
               Cow position:chr28:10615955-10615757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:662-860
               
               
               Cow position:chr28:4364830-4364637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:662-861
               
               
               Cow position:chr28:29850823-29850632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):177, 124

               
               
               Conread position:662-862
               
               
               Cow position:chr28:4006778-4006972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:662-862
               
               
               Cow position:chr28:6975233-6975425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:662-864
               
               
               Cow position:chr28:7132095-7131898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:662-864
               
               
               Cow position:chr28:17739817-17740018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):128, 38

               
               
               Conread position:663-859
               
               
               Cow position:chr28:17949120-17948929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:664-862
               
               
               Cow position:chr28:5805665-5805853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:666-861
               
               
               Cow position:chr28:30902122-30902311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:670-863
               
               
               Cow position:chr28:7557734-7557538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):102, 109

               
               
               Conread position:675-862
               
               
               Cow position:chr28:9109221-9109402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:680-864
               
               
               Cow position:chr28:16362524-16362348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:694-862
               
               
               Cow position:chr28:3678386-3678550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:715-860
               
               
               Cow position:chr28:5711967-5711822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 39

               
               
               Conread position:527-862
               
               
               Cow position:chr29:24292720-24293055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):32, 66

               
               
               Conread position:527-864
               
               
               Cow position:chr29:43099892-43099562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):72, 18

               
               
               Conread position:530-788
               
               
               Cow position:chr29:26615867-26615605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):69, 110

               
               
               Conread position:530-788
               
               
               Cow position:chr29:39567542-39567792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):69, 119

               
               
               Conread position:530-809
               
               
               Cow position:chr29:10156450-10156176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):72, 163

               
               
               Conread position:530-829
               
               
               Cow position:chr29:28166358-28166072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:530-862
               
               
               Cow position:chr29:12680013-12680343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 110

               
               
               Conread position:530-862
               
               
               Cow position:chr29:31489176-31489509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):69, 103

               
               
               Conread position:530-862
               
               
               Cow position:chr29:40117427-40117750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):69, 10

               
               
               Conread position:531-862
               
               
               Cow position:chr29:31928837-31929171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):68, 113

               
               
               Conread position:532-862
               
               
               Cow position:chr29:4120700-4121041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):32, 231

               
               
               Conread position:532-864
               
               
               Cow position:chr29:22613283-22613608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 225

               
               
               Conread position:533-708
               
               
               Cow position:chr29:42849081-42849256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):65, 108

               
               
               Conread position:533-712
               
               
               Cow position:chr29:31594272-31594092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):73, 124

               
               
               Conread position:533-744
               
               
               Cow position:chr29:43009224-43009017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):66, 116

               
               
               Conread position:533-750
               
               
               Cow position:chr29:24103687-24103468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):66, 88

               
               
               Conread position:533-774
               
               
               Cow position:chr29:22162395-22162152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-788
               
               
               Cow position:chr29:17607278-17607527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 50

               
               
               Conread position:533-795
               
               
               Cow position:chr29:5186637-5186375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):120, 38

               
               
               Conread position:533-798
               
               
               Cow position:chr29:20903426-20903171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):66, 32

               
               
               Conread position:533-800
               
               
               Cow position:chr29:36216975-36217235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):66, 91

               
               
               Conread position:533-804
               
               
               Cow position:chr29:4875035-4874755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):68, 226

               
               
               Conread position:533-807
               
               
               Cow position:chr29:29314797-29314518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-808
               
               
               Cow position:chr29:23244022-23243749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):69, 135

               
               
               Conread position:533-808
               
               
               Cow position:chr29:32211198-32210942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):66, 76

               
               
               Conread position:533-808
               
               
               Cow position:chr29:40959990-40959719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 81

               
               
               Conread position:533-809
               
               
               Cow position:chr29:13372523-13372793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:533-816
               
               
               Cow position:chr29:27588781-27589060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):219, 66

               
               
               Conread position:533-839
               
               
               Cow position:chr29:9718911-9718613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 55

               
               
               Conread position:533-846
               
               
               Cow position:chr29:87160-86835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):35, 102

               
               
               Conread position:533-852
               
               
               Cow position:chr29:28396546-28396872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):34, 69

               
               
               Conread position:533-854
               
               
               Cow position:chr29:29057039-29057353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:533-857
               
               
               Cow position:chr29:38581833-38582150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 102

               
               
               Conread position:533-858
               
               
               Cow position:chr29:17154625-17154943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):66, 185

               
               
               Conread position:533-858
               
               
               Cow position:chr29:25814977-25814654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:533-860
               
               
               Cow position:chr29:5892708-5893029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):69, 9

               
               
               Conread position:533-860
               
               
               Cow position:chr29:43328498-43328815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):67, 232

               
               
               Conread position:533-861
               
               
               Cow position:chr29:35501793-35501481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):77, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr29:2744414-2744084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):66, 224

               
               
               Conread position:533-862
               
               
               Cow position:chr29:5409289-5408957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 97

               
               
               Conread position:533-862
               
               
               Cow position:chr29:10838808-10839124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 120

               
               
               Conread position:533-862
               
               
               Cow position:chr29:17296989-17297323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):32, 122

               
               
               Conread position:533-862
               
               
               Cow position:chr29:19762134-19762448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr29:19949171-19949490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):66, 26

               
               
               Conread position:533-862
               
               
               Cow position:chr29:22714866-22714525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:533-862
               
               
               Cow position:chr29:24952546-24952872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):66, 126

               
               
               Conread position:533-862
               
               
               Cow position:chr29:25091970-25092289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 87

               
               
               Conread position:533-862
               
               
               Cow position:chr29:31674488-31674816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):105, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr29:34745804-34745476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 146

               
               
               Conread position:533-862
               
               
               Cow position:chr29:34773876-34773564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:533-862
               
               
               Cow position:chr29:35084365-35084038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:533-862
               
               
               Cow position:chr29:35291948-35292271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):97, 64

               
               
               Conread position:533-862
               
               
               Cow position:chr29:35677692-35677356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):32, 229

               
               
               Conread position:533-862
               
               
               Cow position:chr29:39111457-39111139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):66, 210

               
               
               Conread position:533-862
               
               
               Cow position:chr29:42364156-42363834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):66, 119

               
               
               Conread position:533-863
               
               
               Cow position:chr29:4520193-4520518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):66, 122

               
               
               Conread position:533-863
               
               
               Cow position:chr29:13639512-13639183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 88

               
               
               Conread position:533-864
               
               
               Cow position:chr29:4480314-4479980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:533-864
               
               
               Cow position:chr29:9709554-9709880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:533-864
               
               
               Cow position:chr29:10456701-10456393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):64, 101

               
               
               Conread position:533-864
               
               
               Cow position:chr29:36530725-36531053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 77

               
               
               Conread position:534-793
               
               
               Cow position:chr29:463795-463536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:534-837
               
               
               Cow position:chr29:29974903-29975199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 34

               
               
               Conread position:534-859
               
               
               Cow position:chr29:11562474-11562808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):65, 75

               
               
               Conread position:534-861
               
               
               Cow position:chr29:17462927-17462595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 69

               
               
               Conread position:534-861
               
               
               Cow position:chr29:30440784-30441123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:534-862
               
               
               Cow position:chr29:18462696-18462369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):115, 65

               
               
               Conread position:534-862
               
               
               Cow position:chr29:25737559-25737234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 254

               
               
               Conread position:534-862
               
               
               Cow position:chr29:29769492-29769169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 117

               
               
               Conread position:534-864
               
               
               Cow position:chr29:12784098-12783768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):33, 113

               
               
               Conread position:534-864
               
               
               Cow position:chr29:22068892-22068554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 195

               
               
               Conread position:535-721
               
               
               Cow position:chr29:1124515-1124699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):64, 126

               
               
               Conread position:535-793
               
               
               Cow position:chr29:9912032-9912291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 230

               
               
               Conread position:535-832
               
               
               Cow position:chr29:11646955-11647244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):103, 57

               
               
               Conread position:535-852
               
               
               Cow position:chr29:24045850-24046173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 233

               
               
               Conread position:535-861
               
               
               Cow position:chr29:17222272-17222600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):22, 104

               
               
               Conread position:535-862
               
               
               Cow position:chr29:35458915-35458584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 29

               
               
               Conread position:535-862
               
               
               Cow position:chr29:37618166-37618493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):98, 64

               
               
               Conread position:535-864
               
               
               Cow position:chr29:1395456-1395759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):64, 74

               
               
               Conread position:536-760
               
               
               Cow position:chr29:40166107-40166326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):111, 63

               
               
               Conread position:536-774
               
               
               Cow position:chr29:27329753-27329989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):66, 116

               
               
               Conread position:536-862
               
               
               Cow position:chr29:22690084-22690412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 69

               
               
               Conread position:536-862
               
               
               Cow position:chr29:34297704-34297386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):61, 25

               
               
               Conread position:539-796
               
               
               Cow position:chr29:4002760-4003009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):169, 50

               
               
               Conread position:539-845
               
               
               Cow position:chr29:10058672-10058372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):99, 60

               
               
               Conread position:539-850
               
               
               Cow position:chr29:1556796-1557100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):60, 42

               
               
               Conread position:539-862
               
               
               Cow position:chr29:31943744-31944053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):202, 57

               
               
               Conread position:540-846
               
               
               Cow position:chr29:29795523-29795211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):25, 83

               
               
               Conread position:540-852
               
               
               Cow position:chr29:465532-465223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 45

               
               
               Conread position:541-864
               
               
               Cow position:chr29:17109834-17110140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 81

               
               
               Conread position:542-862
               
               
               Cow position:chr29:28735178-28734862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 59

               
               
               Conread position:543-808
               
               
               Cow position:chr29:45005757-45005500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):103, 56

               
               
               Conread position:545-788
               
               
               Cow position:chr29:29176745-29176506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):57, 89

               
               
               Conread position:546-858
               
               
               Cow position:chr29:34359109-34358797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):107, 98

               
               
               Conread position:556-861
               
               
               Cow position:chr29:23874345-23874646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):214, 7

               
               
               Conread position:556-862
               
               
               Cow position:chr29:27846350-27846669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):189, 43

               
               
               Conread position:557-808
               
               
               Cow position:chr29:26559358-26559115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):195, 31

               
               
               Conread position:558-862
               
               
               Cow position:chr29:5063031-5063328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:559-862
               
               
               Cow position:chr29:1614809-1615112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 125

               
               
               Conread position:567-862
               
               
               Cow position:chr29:26017610-26017315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:569-862
               
               
               Cow position:chr29:26778774-26779061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):69, 30

               
               
               Conread position:570-808
               
               
               Cow position:chr29:8926568-8926330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:572-774
               
               
               Cow position:chr29:24578755-24578960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 185

               
               
               Conread position:584-862
               
               
               Cow position:chr29:21665996-21666271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):19, 63

               
               
               Conread position:584-862
               
               
               Cow position:chr29:29923666-29923391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):62, 81

               
               
               Conread position:586-862
               
               
               Cow position:chr29:7624087-7624350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:590-862
               
               
               Cow position:chr29:20770258-20770529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):12, 122

               
               
               Conread position:598-774
               
               
               Cow position:chr29:18012478-18012655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:601-858
               
               
               Cow position:chr29:23825292-23825031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):26, 7

               
               
               Conread position:601-861
               
               
               Cow position:chr29:41112948-41112706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):158, 35

               
               
               Conread position:601-862
               
               
               Cow position:chr29:22029031-22028776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 118

               
               
               Conread position:601-862
               
               
               Cow position:chr29:29324487-29324235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):190, 31

               
               
               Conread position:601-863
               
               
               Cow position:chr29:23220575-23220302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):172, 144

               
               
               Conread position:602-862
               
               
               Cow position:chr29:36952372-36952127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 109

               
               
               Conread position:604-858
               
               
               Cow position:chr29:36248964-36249219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):148, 157

               
               
               Conread position:609-807
               
               
               Cow position:chr29:38978464-38978661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):174, 133

               
               
               Conread position:609-861
               
               
               Cow position:chr29:30548708-30548957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):185, 177

               
               
               Conread position:609-864
               
               
               Cow position:chr29:44139311-44139058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:621-862
               
               
               Cow position:chr29:23155174-23155420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):152, 30

               
               
               Conread position:629-861
               
               
               Cow position:chr29:44991471-44991241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):221, 73

               
               
               Conread position:631-862
               
               
               Cow position:chr29:16290680-16290908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):138, 121

               
               
               Conread position:632-862
               
               
               Cow position:chr29:31651365-31651587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 141

               
               
               Conread position:637-862
               
               
               Cow position:chr29:32197657-32197879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:648-862
               
               
               Cow position:chr29:9310571-9310788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):75, 65

               
               
               Conread position:651-862
               
               
               Cow position:chr29:17804509-17804715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:651-862
               
               
               Cow position:chr29:26540566-26540355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):121, 137

               
               
               Conread position:652-845
               
               
               Cow position:chr29:22723576-22723767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:653-782
               
               
               Cow position:chr29:742673-742544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:654-862
               
               
               Cow position:chr29:7290753-7290954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:657-862
               
               
               Cow position:chr29:19125303-19125515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):154, 9

               
               
               Conread position:661-862
               
               
               Cow position:chr29:9378621-9378820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):89, 98

               
               
               Conread position:661-862
               
               
               Cow position:chr29:36357113-36357313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):147, 48

               
               
               Conread position:661-864
               
               
               Cow position:chr29:4070612-4070807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:663-861
               
               
               Cow position:chr29:29308586-29308398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 124

               
               
               Conread position:664-862
               
               
               Cow position:chr29:36781317-36781125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:664-862
               
               
               Cow position:chr29:39038282-39038084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:666-862
               
               
               Cow position:chr29:19363700-19363893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:676-859
               
               
               Cow position:chr29:43088310-43088488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:699-862
               
               
               Cow position:chr29:17282090-17282246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:719-862
               
               
               Cow position:chr29:33143312-33143171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:525-862
               
               
               Cow position:chr7:53579499-53579160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):40, 6

               
               
               Conread position:526-862
               
               
               Cow position:chr7:30276632-30276966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 8

               
               
               Conread position:527-808
               
               
               Cow position:chr7:147308-147588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:527-816
               
               
               Cow position:chr7:5853254-5853531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):267, 118

               
               
               Conread position:527-844
               
               
               Cow position:chr7:51644556-51644856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):72, 35

               
               
               Conread position:527-845
               
               
               Cow position:chr7:33385822-33386130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):40, 55

               
               
               Conread position:527-854
               
               
               Cow position:chr7:10040-10367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 162

               
               
               Conread position:527-864
               
               
               Cow position:chr7:31497616-31497931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):5, 103

               
               
               Conread position:529-799
               
               
               Cow position:chr7:39325638-39325890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:530-806
               
               
               Cow position:chr7:23646505-23646786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):75, 110

               
               
               Conread position:530-808
               
               
               Cow position:chr7:40952963-40952690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 171

               
               
               Conread position:530-808
               
               
               Cow position:chr7:57259129-57258850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):37, 19

               
               
               Conread position:530-812
               
               
               Cow position:chr7:24220568-24220846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):37, 80

               
               
               Conread position:530-835
               
               
               Cow position:chr7:42636879-42637167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 115

               
               
               Conread position:530-843
               
               
               Cow position:chr7:41872190-41871893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):260, 32

               
               
               Conread position:530-858
               
               
               Cow position:chr7:40406557-40406868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):106, 64

               
               
               Conread position:530-860
               
               
               Cow position:chr7:29300858-29300550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):102, 77

               
               
               Conread position:530-861
               
               
               Cow position:chr7:49751025-49751356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 192

               
               
               Conread position:530-861
               
               
               Cow position:chr7:58967167-58967497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 80

               
               
               Conread position:531-774
               
               
               Cow position:chr7:9926831-9926589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):201, 67

               
               
               Conread position:532-862
               
               
               Cow position:chr7:33393215-33393536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 46

               
               
               Conread position:532-862
               
               
               Cow position:chr7:55688297-55687954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):67, 15

               
               
               Conread position:533-701
               
               
               Cow position:chr7:32819717-32819887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-749
               
               
               Cow position:chr7:2923547-2923764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:533-749
               
               
               Cow position:chr7:17756939-17757149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):41, 109

               
               
               Conread position:533-750
               
               
               Cow position:chr7:38263571-38263790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 171

               
               
               Conread position:533-751
               
               
               Cow position:chr7:3773365-3773148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 9

               
               
               Conread position:533-753
               
               
               Cow position:chr7:8272561-8272782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:533-754
               
               
               Cow position:chr7:32372760-32372979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 167

               
               
               Conread position:533-761
               
               
               Cow position:chr7:42244792-42244573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):140, 66

               
               
               Conread position:533-766
               
               
               Cow position:chr7:25496635-25496857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-767
               
               
               Cow position:chr7:30816385-30816158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):65, 29

               
               
               Conread position:533-771
               
               
               Cow position:chr7:39451232-39451011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:533-776
               
               
               Cow position:chr7:45927256-45927021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):66, 82

               
               
               Conread position:533-777
               
               
               Cow position:chr7:48243575-48243816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):69, 62

               
               
               Conread position:533-782
               
               
               Cow position:chr7:14174513-14174277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):66, 57

               
               
               Conread position:533-782
               
               
               Cow position:chr7:40121366-40121620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):72, 14

               
               
               Conread position:533-783
               
               
               Cow position:chr7:13133789-13133553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:533-784
               
               
               Cow position:chr7:35893318-35893570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):199, 112

               
               
               Conread position:533-784
               
               
               Cow position:chr7:40263746-40263507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-787
               
               
               Cow position:chr7:53698010-53697753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-790
               
               
               Cow position:chr7:8977917-8977667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):68, 96

               
               
               Conread position:533-794
               
               
               Cow position:chr7:23936015-23936270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:533-794
               
               
               Cow position:chr7:51319701-51319966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:533-800
               
               
               Cow position:chr7:58170642-58170906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:533-801
               
               
               Cow position:chr7:28544077-28544342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):63, 117

               
               
               Conread position:533-802
               
               
               Cow position:chr7:9800255-9800522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:533-804
               
               
               Cow position:chr7:45331450-45331709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):126, 48

               
               
               Conread position:533-804
               
               
               Cow position:chr7:49903677-49903942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):120, 64

               
               
               Conread position:533-806
               
               
               Cow position:chr7:49648266-49648531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 94

               
               
               Conread position:533-807
               
               
               Cow position:chr7:28916988-28917263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):12, 118

               
               
               Conread position:533-808
               
               
               Cow position:chr7:3256452-3256172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 238

               
               
               Conread position:533-808
               
               
               Cow position:chr7:17816655-17816922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:533-808
               
               
               Cow position:chr7:27283584-27283849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):66, 106

               
               
               Conread position:533-808
               
               
               Cow position:chr7:34422367-34422099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):73, 173

               
               
               Conread position:533-808
               
               
               Cow position:chr7:44986552-44986826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):27, 202

               
               
               Conread position:533-808
               
               
               Cow position:chr7:62793687-62793974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 156

               
               
               Conread position:533-808
               
               
               Cow position:chr7:64364625-64364355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):93, 65

               
               
               Conread position:533-825
               
               
               Cow position:chr7:21565653-21565377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:533-831
               
               
               Cow position:chr7:50859914-50860201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:533-832
               
               
               Cow position:chr7:1558637-1558942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 112

               
               
               Conread position:533-832
               
               
               Cow position:chr7:18188320-18188038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):105, 59

               
               
               Conread position:533-845
               
               
               Cow position:chr7:47513786-47513473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):66, 203

               
               
               Conread position:533-846
               
               
               Cow position:chr7:48714753-48715069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-849
               
               
               Cow position:chr7:23568835-23568518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):98, 66

               
               
               Conread position:533-850
               
               
               Cow position:chr7:39903994-39904306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):24, 71

               
               
               Conread position:533-852
               
               
               Cow position:chr7:9781826-9781503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):32, 122

               
               
               Conread position:533-856
               
               
               Cow position:chr7:26737434-26737118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):257, 66

               
               
               Conread position:533-858
               
               
               Cow position:chr7:48667327-48667627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):113, 9

               
               
               Conread position:533-858
               
               
               Cow position:chr7:64228995-64228665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 122

               
               
               Conread position:533-860
               
               
               Cow position:chr7:53763683-53763365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):66, 116

               
               
               Conread position:533-860
               
               
               Cow position:chr7:66748623-66748306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:533-861
               
               
               Cow position:chr7:2579341-2579009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:533-861
               
               
               Cow position:chr7:4129880-4129560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):66, 50

               
               
               Conread position:533-861
               
               
               Cow position:chr7:4764749-4765066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:533-861
               
               
               Cow position:chr7:10943648-10943317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):109, 44

               
               
               Conread position:533-861
               
               
               Cow position:chr7:20168453-20168773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:533-861
               
               
               Cow position:chr7:22793250-22793562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:533-861
               
               
               Cow position:chr7:25415300-25415624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):27, 66

               
               
               Conread position:533-861
               
               
               Cow position:chr7:30932074-30931756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):69, 166

               
               
               Conread position:533-861
               
               
               Cow position:chr7:36665233-36665555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 105

               
               
               Conread position:533-861
               
               
               Cow position:chr7:41315533-41315198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 58

               
               
               Conread position:533-861
               
               
               Cow position:chr7:47547307-47547632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):25, 226

               
               
               Conread position:533-861
               
               
               Cow position:chr7:54712320-54712643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):66, 248

               
               
               Conread position:533-862
               
               
               Cow position:chr7:3304470-3304807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):32, 54

               
               
               Conread position:533-862
               
               
               Cow position:chr7:3336650-3336333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):69, 99

               
               
               Conread position:533-862
               
               
               Cow position:chr7:5199649-5199330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 181

               
               
               Conread position:533-862
               
               
               Cow position:chr7:14524381-14524699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):74, 114

               
               
               Conread position:533-862
               
               
               Cow position:chr7:14536382-14536060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):24, 182

               
               
               Conread position:533-862
               
               
               Cow position:chr7:15559593-15559912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr7:15569943-15570265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 108

               
               
               Conread position:533-862
               
               
               Cow position:chr7:17967216-17966898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):209, 42

               
               
               Conread position:533-862
               
               
               Cow position:chr7:23205730-23205400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):66, 233

               
               
               Conread position:533-862
               
               
               Cow position:chr7:23636609-23636938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):69, 29

               
               
               Conread position:533-862
               
               
               Cow position:chr7:23679690-23679364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):66, 119

               
               
               Conread position:533-862
               
               
               Cow position:chr7:25195440-25195778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 94

               
               
               Conread position:533-862
               
               
               Cow position:chr7:32894345-32894011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:533-862
               
               
               Cow position:chr7:33697857-33698181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 88

               
               
               Conread position:533-862
               
               
               Cow position:chr7:34554166-34554474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 76

               
               
               Conread position:533-862
               
               
               Cow position:chr7:35275179-35274858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 182

               
               
               Conread position:533-862
               
               
               Cow position:chr7:39415810-39416134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 254

               
               
               Conread position:533-862
               
               
               Cow position:chr7:40425415-40425081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 131

               
               
               Conread position:533-862
               
               
               Cow position:chr7:43109631-43109309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 101

               
               
               Conread position:533-862
               
               
               Cow position:chr7:46818593-46818272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):7, 67

               
               
               Conread position:533-862
               
               
               Cow position:chr7:47931900-47931563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):29, 122

               
               
               Conread position:533-862
               
               
               Cow position:chr7:49106300-49105975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 161

               
               
               Conread position:533-862
               
               
               Cow position:chr7:49417505-49417834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):69, 125

               
               
               Conread position:533-862
               
               
               Cow position:chr7:50066211-50065889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr7:57593338-57593653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:533-862
               
               
               Cow position:chr7:61790455-61790125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 84

               
               
               Conread position:533-862
               
               
               Cow position:chr7:63946681-63946370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):68, 39

               
               
               Conread position:533-863
               
               
               Cow position:chr7:11783531-11783196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 121

               
               
               Conread position:533-864
               
               
               Cow position:chr7:9136735-9137080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 122

               
               
               Conread position:533-864
               
               
               Cow position:chr7:36533933-36534256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):158, 60

               
               
               Conread position:533-864
               
               
               Cow position:chr7:48020322-48020655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:533-864
               
               
               Cow position:chr7:53053500-53053175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 47

               
               
               Conread position:533-864
               
               
               Cow position:chr7:56820670-56820358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):69, 99

               
               
               Conread position:534-762
               
               
               Cow position:chr7:27509621-27509844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):65, 115

               
               
               Conread position:534-778
               
               
               Cow position:chr7:39930194-39930431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):65, 106

               
               
               Conread position:534-790
               
               
               Cow position:chr7:26631912-26631655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):23, 119

               
               
               Conread position:534-798
               
               
               Cow position:chr7:61823952-61823687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):65, 176

               
               
               Conread position:534-806
               
               
               Cow position:chr7:38082058-38082329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):65, 106

               
               
               Conread position:534-809
               
               
               Cow position:chr7:36278198-36278471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):65, 75

               
               
               Conread position:534-845
               
               
               Cow position:chr7:46857057-46856754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 95

               
               
               Conread position:534-846
               
               
               Cow position:chr7:55085558-55085872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 110

               
               
               Conread position:534-854
               
               
               Cow position:chr7:8777104-8777430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):24, 239

               
               
               Conread position:534-854
               
               
               Cow position:chr7:20968337-20968644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:238
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):193, 65

               
               
               Conread position:534-857
               
               
               Cow position:chr7:32945976-32946289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:534-858
               
               
               Cow position:chr7:59168174-59168475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):65, 100

               
               
               Conread position:534-859
               
               
               Cow position:chr7:44596797-44596482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):64, 124

               
               
               Conread position:534-860
               
               
               Cow position:chr7:13593668-13594001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):23, 189

               
               
               Conread position:534-862
               
               
               Cow position:chr7:8877779-8878112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):31, 15

               
               
               Conread position:534-862
               
               
               Cow position:chr7:16022200-16022520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):65, 45

               
               
               Conread position:534-862
               
               
               Cow position:chr7:31171049-31170731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):65, 196

               
               
               Conread position:534-862
               
               
               Cow position:chr7:31315215-31315529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):65, 113

               
               
               Conread position:534-862
               
               
               Cow position:chr7:44454378-44454039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):31, 117

               
               
               Conread position:534-862
               
               
               Cow position:chr7:52383073-52382729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):98, 66

               
               
               Conread position:534-862
               
               
               Cow position:chr7:63749572-63749254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):225, 65

               
               
               Conread position:534-862
               
               
               Cow position:chr7:64135563-64135240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):33, 113

               
               
               Conread position:535-727
               
               
               Cow position:chr7:14353886-14353694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):64, 117

               
               
               Conread position:535-793
               
               
               Cow position:chr7:6041880-6042131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):64, 71

               
               
               Conread position:535-796
               
               
               Cow position:chr7:32915013-32915276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:535-806
               
               
               Cow position:chr7:40067562-40067833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):31, 129

               
               
               Conread position:535-808
               
               
               Cow position:chr7:68170696-68170427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):100, 57

               
               
               Conread position:535-812
               
               
               Cow position:chr7:44049467-44049191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:535-816
               
               
               Cow position:chr7:10512806-10512531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:535-818
               
               
               Cow position:chr7:36569753-36570048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:535-822
               
               
               Cow position:chr7:62733087-62733367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):26, 159

               
               
               Conread position:535-837
               
               
               Cow position:chr7:29280109-29279817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:535-844
               
               
               Cow position:chr7:51910038-51910328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:535-860
               
               
               Cow position:chr7:29509857-29510160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:535-861
               
               
               Cow position:chr7:31503757-31504076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):23, 106

               
               
               Conread position:535-861
               
               
               Cow position:chr7:58302036-58301713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):64, 117

               
               
               Conread position:535-862
               
               
               Cow position:chr7:15755546-15755216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):64, 89

               
               
               Conread position:535-862
               
               
               Cow position:chr7:27079530-27079854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 105

               
               
               Conread position:535-862
               
               
               Cow position:chr7:29479429-29479749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):64, 105

               
               
               Conread position:535-862
               
               
               Cow position:chr7:43711122-43711440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):72, 49

               
               
               Conread position:535-862
               
               
               Cow position:chr7:48721999-48721677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):64, 177

               
               
               Conread position:535-862
               
               
               Cow position:chr7:68051005-68051339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):67, 93

               
               
               Conread position:535-864
               
               
               Cow position:chr7:53097491-53097823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 221

               
               
               Conread position:536-861
               
               
               Cow position:chr7:60483522-60483205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):63, 115

               
               
               Conread position:536-862
               
               
               Cow position:chr7:4452508-4452832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):63, 96

               
               
               Conread position:536-862
               
               
               Cow position:chr7:17713568-17713234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):63, 111

               
               
               Conread position:536-862
               
               
               Cow position:chr7:37394221-37394527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):262, 61

               
               
               Conread position:536-863
               
               
               Cow position:chr7:5027249-5026946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:537-807
               
               
               Cow position:chr7:10381709-10381972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):63, 13

               
               
               Conread position:538-774
               
               
               Cow position:chr7:13228670-13228438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):61, 71

               
               
               Conread position:538-862
               
               
               Cow position:chr7:4720325-4719998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):61, 77

               
               
               Conread position:539-761
               
               
               Cow position:chr7:23251655-23251438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 109

               
               
               Conread position:539-809
               
               
               Cow position:chr7:41328133-41327858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:539-823
               
               
               Cow position:chr7:39472610-39472325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):47, 186

               
               
               Conread position:539-824
               
               
               Cow position:chr7:31094441-31094157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:539-862
               
               
               Cow position:chr7:19466345-19466030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):18, 110

               
               
               Conread position:539-862
               
               
               Cow position:chr7:43908114-43908423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):60, 42

               
               
               Conread position:539-864
               
               
               Cow position:chr7:53382108-53382411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):60, 157

               
               
               Conread position:540-803
               
               
               Cow position:chr7:20537271-20537536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):59, 249

               
               
               Conread position:540-808
               
               
               Cow position:chr7:40074583-40074858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):59, 45

               
               
               Conread position:540-859
               
               
               Cow position:chr7:50566291-50565969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):57, 83

               
               
               Conread position:541-790
               
               
               Cow position:chr7:37361790-37362033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):58, 93

               
               
               Conread position:541-809
               
               
               Cow position:chr7:25512214-25511948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:541-852
               
               
               Cow position:chr7:21166338-21166022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 217

               
               
               Conread position:541-856
               
               
               Cow position:chr7:14481971-14482289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):23, 116

               
               
               Conread position:541-862
               
               
               Cow position:chr7:20219926-20219614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):211, 57

               
               
               Conread position:541-862
               
               
               Cow position:chr7:20534785-20535100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:541-862
               
               
               Cow position:chr7:36996284-36996586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:542-805
               
               
               Cow position:chr7:33989867-33990123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 59

               
               
               Conread position:542-839
               
               
               Cow position:chr7:15534162-15533873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):152, 54

               
               
               Conread position:542-843
               
               
               Cow position:chr7:63707394-63707107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):248, 60

               
               
               Conread position:542-862
               
               
               Cow position:chr7:37568946-37569280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 235

               
               
               Conread position:543-737
               
               
               Cow position:chr7:14542147-14541965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):56, 91

               
               
               Conread position:543-862
               
               
               Cow position:chr7:33514798-33515121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):15, 109

               
               
               Conread position:544-711
               
               
               Cow position:chr7:28584159-28584325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 95

               
               
               Conread position:544-862
               
               
               Cow position:chr7:21009026-21008694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):151, 53

               
               
               Conread position:546-862
               
               
               Cow position:chr7:42593365-42593036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 107

               
               
               Conread position:547-861
               
               
               Cow position:chr7:8658429-8658741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 80

               
               
               Conread position:548-750
               
               
               Cow position:chr7:8102338-8102538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):54, 85

               
               
               Conread position:548-861
               
               
               Cow position:chr7:12227248-12226932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 52

               
               
               Conread position:548-863
               
               
               Cow position:chr7:32260285-32259969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):51, 61

               
               
               Conread position:550-861
               
               
               Cow position:chr7:60869866-60870153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):49, 86

               
               
               Conread position:550-864
               
               
               Cow position:chr7:11714508-11714212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):47, 91

               
               
               Conread position:551-861
               
               
               Cow position:chr7:8110331-8110018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):7, 95

               
               
               Conread position:551-864
               
               
               Cow position:chr7:35300500-35300191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 112

               
               
               Conread position:553-862
               
               
               Cow position:chr7:39094004-39093695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):201, 49

               
               
               Conread position:555-862
               
               
               Cow position:chr7:13963129-13963438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 8

               
               
               Conread position:555-862
               
               
               Cow position:chr7:29682524-29682220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):217, 44

               
               
               Conread position:555-862
               
               
               Cow position:chr7:30017591-30017294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 13

               
               
               Conread position:555-862
               
               
               Cow position:chr7:40308592-40308289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 90

               
               
               Conread position:556-797
               
               
               Cow position:chr7:33298519-33298283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):46, 128

               
               
               Conread position:556-862
               
               
               Cow position:chr7:54513485-54513180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 227

               
               
               Conread position:556-862
               
               
               Cow position:chr7:60732715-60732402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 77

               
               
               Conread position:556-862
               
               
               Cow position:chr7:67873116-67873424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 10

               
               
               Conread position:557-802
               
               
               Cow position:chr7:18288342-18288097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:565-862
               
               
               Cow position:chr7:428849-428559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 74

               
               
               Conread position:566-808
               
               
               Cow position:chr7:24460893-24461124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 43

               
               
               Conread position:566-860
               
               
               Cow position:chr7:1761660-1761957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):33, 52

               
               
               Conread position:567-864
               
               
               Cow position:chr7:36856479-36856765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):205, 32

               
               
               Conread position:570-796
               
               
               Cow position:chr7:29121840-29122064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):29, 85

               
               
               Conread position:570-854
               
               
               Cow position:chr7:40484260-40484541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:571-861
               
               
               Cow position:chr7:168729-168431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):28, 150

               
               
               Conread position:571-862
               
               
               Cow position:chr7:33719973-33720263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):28, 84

               
               
               Conread position:571-862
               
               
               Cow position:chr7:41615049-41614750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):31, 196

               
               
               Conread position:572-838
               
               
               Cow position:chr7:32221995-32222267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):105, 26

               
               
               Conread position:572-840
               
               
               Cow position:chr7:56886568-56886306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 9

               
               
               Conread position:578-862
               
               
               Cow position:chr7:7535480-7535763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):21, 74

               
               
               Conread position:583-864
               
               
               Cow position:chr7:8821423-8821701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 172

               
               
               Conread position:584-862
               
               
               Cow position:chr7:17750884-17750613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:584-862
               
               
               Cow position:chr7:38429759-38429489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 68

               
               
               Conread position:585-862
               
               
               Cow position:chr7:54013322-54013606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):14, 55

               
               
               Conread position:587-862
               
               
               Cow position:chr7:23761929-23762195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:593-862
               
               
               Cow position:chr7:12495148-12494893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):6, 46

               
               
               Conread position:594-856
               
               
               Cow position:chr7:50493954-50494219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):5, 239

               
               
               Conread position:596-862
               
               
               Cow position:chr7:8089126-8089390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 52

               
               
               Conread position:598-860
               
               
               Cow position:chr7:26263692-26263428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):57, 195

               
               
               Conread position:601-862
               
               
               Cow position:chr7:29505083-29505340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:603-862
               
               
               Cow position:chr7:9070433-9070681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 50

               
               
               Conread position:605-793
               
               
               Cow position:chr7:61699722-61699533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):51, 34

               
               
               Conread position:609-803
               
               
               Cow position:chr7:49405268-49405457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:609-861
               
               
               Cow position:chr7:50166005-50166255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 15

               
               
               Conread position:609-864
               
               
               Cow position:chr7:23624686-23624435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):143, 6

               
               
               Conread position:614-862
               
               
               Cow position:chr7:14316924-14317167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:614-862
               
               
               Cow position:chr7:53785996-53785761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):118, 24

               
               
               Conread position:615-860
               
               
               Cow position:chr7:37498212-37497962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:624-863
               
               
               Cow position:chr7:32884155-32884385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):19, 87

               
               
               Conread position:630-839
               
               
               Cow position:chr7:11487677-11487466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):23, 90

               
               
               Conread position:630-862
               
               
               Cow position:chr7:26871994-26871762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:630-863
               
               
               Cow position:chr7:56557151-56556924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 95

               
               
               Conread position:632-862
               
               
               Cow position:chr7:12488434-12488652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):134, 19

               
               
               Conread position:633-862
               
               
               Cow position:chr7:26909762-26909535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 67

               
               
               Conread position:634-789
               
               
               Cow position:chr7:52517325-52517482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:636-859
               
               
               Cow position:chr7:18247826-18247612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:640-864
               
               
               Cow position:chr7:58330822-58330596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):133, 123

               
               
               Conread position:651-860
               
               
               Cow position:chr7:9077792-9077582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):103, 126

               
               
               Conread position:651-862
               
               
               Cow position:chr7:6044119-6043909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):42, 126

               
               
               Conread position:651-862
               
               
               Cow position:chr7:10415116-10414912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:651-862
               
               
               Cow position:chr7:11796884-11796675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:651-862
               
               
               Cow position:chr7:35088675-35088888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:652-862
               
               
               Cow position:chr7:6469640-6469854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:652-864
               
               
               Cow position:chr7:9660296-9660499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:662-845
               
               
               Cow position:chr7:11960426-11960605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:662-861
               
               
               Cow position:chr7:62498020-62497826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):69, 112

               
               
               Conread position:662-862
               
               
               Cow position:chr7:9816027-9816228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):135, 81

               
               
               Conread position:662-862
               
               
               Cow position:chr7:39947220-39947019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):177, 125

               
               
               Conread position:670-861
               
               
               Cow position:chr7:6821082-6821274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):103, 114

               
               
               Conread position:673-862
               
               
               Cow position:chr7:11785004-11784817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:674-861
               
               
               Cow position:chr7:40311021-40310833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:677-862
               
               
               Cow position:chr7:46191915-46191731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:680-862
               
               
               Cow position:chr7:11054598-11054782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):92, 137

               
               
               Conread position:681-859
               
               
               Cow position:chr7:12918529-12918357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:681-862
               
               
               Cow position:chr7:23671800-23671981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:688-864
               
               
               Cow position:chr7:10438383-10438557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:715-862
               
               
               Cow position:chr7:39988816-39988961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:719-862
               
               
               Cow position:chr7:10441882-10441741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:487-860
               
               
               Cow position:chr8:6193786-6194177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):27, 15

               
               
               Conread position:527-796
               
               
               Cow position:chr8:6076681-6076421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):256, 69

               
               
               Conread position:527-845
               
               
               Cow position:chr8:538054-537728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):7, 102

               
               
               Conread position:527-861
               
               
               Cow position:chr8:8190202-8189862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 252

               
               
               Conread position:527-862
               
               
               Cow position:chr8:20107919-20107597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 7

               
               
               Conread position:527-862
               
               
               Cow position:chr8:30324179-30324514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):30, 40

               
               
               Conread position:527-862
               
               
               Cow position:chr8:32133136-32133461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):72, 84

               
               
               Conread position:527-862
               
               
               Cow position:chr8:37636125-37635799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 7

               
               
               Conread position:529-823
               
               
               Cow position:chr8:4649024-4648729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):9, 258

               
               
               Conread position:529-862
               
               
               Cow position:chr8:58058605-58058938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):9, 258

               
               
               Conread position:530-686
               
               
               Cow position:chr8:46616280-46616432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):69, 89

               
               
               Conread position:530-771
               
               
               Cow position:chr8:554319-554078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):69, 110

               
               
               Conread position:530-774
               
               
               Cow position:chr8:17103553-17103317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):72, 118

               
               
               Conread position:530-808
               
               
               Cow position:chr8:40032946-40032677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 109

               
               
               Conread position:530-824
               
               
               Cow position:chr8:38681749-38682036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):111, 69

               
               
               Conread position:530-836
               
               
               Cow position:chr8:43439477-43439783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):109, 186

               
               
               Conread position:530-836
               
               
               Cow position:chr8:53633364-53633059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):27, 140

               
               
               Conread position:530-845
               
               
               Cow position:chr8:33125371-33125674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 69

               
               
               Conread position:530-853
               
               
               Cow position:chr8:29030232-29029892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 276

               
               
               Conread position:530-861
               
               
               Cow position:chr8:42762564-42762238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 119

               
               
               Conread position:530-861
               
               
               Cow position:chr8:58636631-58636927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:530-862
               
               
               Cow position:chr8:948413-948725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:530-862
               
               
               Cow position:chr8:1620861-1620527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):37, 69

               
               
               Conread position:530-862
               
               
               Cow position:chr8:2865775-2866107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):222, 68

               
               
               Conread position:530-862
               
               
               Cow position:chr8:18730307-18730655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):42, 128

               
               
               Conread position:530-862
               
               
               Cow position:chr8:22273727-22274060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:530-862
               
               
               Cow position:chr8:38893876-38894216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 58

               
               
               Conread position:530-862
               
               
               Cow position:chr8:61567500-61567175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):69, 31

               
               
               Conread position:531-778
               
               
               Cow position:chr8:6485065-6484816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:531-803
               
               
               Cow position:chr8:38861829-38861564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):68, 50

               
               
               Conread position:531-828
               
               
               Cow position:chr8:19011927-19011637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):68, 103

               
               
               Conread position:531-842
               
               
               Cow position:chr8:6951399-6951699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:531-852
               
               
               Cow position:chr8:43858188-43857870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:533-685
               
               
               Cow position:chr8:6675017-6675169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:533-692
               
               
               Cow position:chr8:39721537-39721697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:533-695
               
               
               Cow position:chr8:51480960-51480800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:533-707
               
               
               Cow position:chr8:17669869-17669693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):66, 97

               
               
               Conread position:533-745
               
               
               Cow position:chr8:10297865-10297656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):66, 91

               
               
               Conread position:533-746
               
               
               Cow position:chr8:37334042-37334254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 87

               
               
               Conread position:533-750
               
               
               Cow position:chr8:2814492-2814710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):57, 120

               
               
               Conread position:533-750
               
               
               Cow position:chr8:28294972-28294761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:533-754
               
               
               Cow position:chr8:3338955-3339169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 112

               
               
               Conread position:533-754
               
               
               Cow position:chr8:10263293-10263075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:533-754
               
               
               Cow position:chr8:20683839-20684062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):39, 119

               
               
               Conread position:533-774
               
               
               Cow position:chr8:16031704-16031469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):69, 92

               
               
               Conread position:533-784
               
               
               Cow position:chr8:5979811-5980059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):82, 66

               
               
               Conread position:533-784
               
               
               Cow position:chr8:39630644-39630892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):66, 77

               
               
               Conread position:533-787
               
               
               Cow position:chr8:8577707-8577952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:533-787
               
               
               Cow position:chr8:29026766-29026514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):28, 115

               
               
               Conread position:533-788
               
               
               Cow position:chr8:13374417-13374669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 27

               
               
               Conread position:533-788
               
               
               Cow position:chr8:32093748-32093997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):69, 117

               
               
               Conread position:533-792
               
               
               Cow position:chr8:29625092-29624841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:533-797
               
               
               Cow position:chr8:33432126-33432392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):148, 66

               
               
               Conread position:533-797
               
               
               Cow position:chr8:35990920-35991185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):66, 47

               
               
               Conread position:533-798
               
               
               Cow position:chr8:6724466-6724210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:533-799
               
               
               Cow position:chr8:4924438-4924703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:533-803
               
               
               Cow position:chr8:33974430-33974694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):29, 34

               
               
               Conread position:533-804
               
               
               Cow position:chr8:24980569-24980839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):206, 127

               
               
               Conread position:533-805
               
               
               Cow position:chr8:24201776-24202058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):65, 234

               
               
               Conread position:533-806
               
               
               Cow position:chr8:2931825-2931559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):143, 63

               
               
               Conread position:533-806
               
               
               Cow position:chr8:12798802-12799059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):103, 50

               
               
               Conread position:533-807
               
               
               Cow position:chr8:1394098-1394375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:533-807
               
               
               Cow position:chr8:45287413-45287158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:533-808
               
               
               Cow position:chr8:21382823-21382547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):66, 190

               
               
               Conread position:533-808
               
               
               Cow position:chr8:23179674-23179402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):66, 179

               
               
               Conread position:533-808
               
               
               Cow position:chr8:28987576-28987841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:533-808
               
               
               Cow position:chr8:50708922-50709196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):66, 252

               
               
               Conread position:533-808
               
               
               Cow position:chr8:57389157-57389423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):66, 135

               
               
               Conread position:533-809
               
               
               Cow position:chr8:2829907-2830177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):67, 59

               
               
               Conread position:533-811
               
               
               Cow position:chr8:53214456-53214183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):65, 82

               
               
               Conread position:533-812
               
               
               Cow position:chr8:60463388-60463651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:533-819
               
               
               Cow position:chr8:25455278-25455556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:533-837
               
               
               Cow position:chr8:16653289-16653597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):7, 61

               
               
               Conread position:533-837
               
               
               Cow position:chr8:31297137-31297445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:533-838
               
               
               Cow position:chr8:53338790-53338490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 37

               
               
               Conread position:533-845
               
               
               Cow position:chr8:16413940-16413630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 120

               
               
               Conread position:533-845
               
               
               Cow position:chr8:35563201-35563522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):65, 246

               
               
               Conread position:533-845
               
               
               Cow position:chr8:39181899-39181591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):28, 101

               
               
               Conread position:533-852
               
               
               Cow position:chr8:36249551-36249231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 69

               
               
               Conread position:533-852
               
               
               Cow position:chr8:48775686-48776007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 123

               
               
               Conread position:533-858
               
               
               Cow position:chr8:20926771-20926433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):34, 113

               
               
               Conread position:533-859
               
               
               Cow position:chr8:37292216-37291892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 93

               
               
               Conread position:533-861
               
               
               Cow position:chr8:17180156-17179845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:533-861
               
               
               Cow position:chr8:19717225-19716920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:533-861
               
               
               Cow position:chr8:38711471-38711783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:533-861
               
               
               Cow position:chr8:41627250-41626917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:533-861
               
               
               Cow position:chr8:41905746-41905424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):222, 18

               
               
               Conread position:533-861
               
               
               Cow position:chr8:41914654-41914332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):222, 18

               
               
               Conread position:533-862
               
               
               Cow position:chr8:1187786-1188110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):26, 37

               
               
               Conread position:533-862
               
               
               Cow position:chr8:3015343-3015678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 258

               
               
               Conread position:533-862
               
               
               Cow position:chr8:4500361-4500685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):64, 113

               
               
               Conread position:533-862
               
               
               Cow position:chr8:6073945-6073623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:533-862
               
               
               Cow position:chr8:8668330-8667988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 15

               
               
               Conread position:533-862
               
               
               Cow position:chr8:8987073-8986732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):217, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr8:9641227-9641555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):32, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr8:9942657-9942326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 102

               
               
               Conread position:533-862
               
               
               Cow position:chr8:10337154-10336846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr8:10970701-10971032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr8:11612417-11612747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):62, 100

               
               
               Conread position:533-862
               
               
               Cow position:chr8:15394990-15394661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):34, 16

               
               
               Conread position:533-862
               
               
               Cow position:chr8:15426623-15426947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):66, 62

               
               
               Conread position:533-862
               
               
               Cow position:chr8:19980206-19979890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):135, 67

               
               
               Conread position:533-862
               
               
               Cow position:chr8:20783395-20783065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):34, 119

               
               
               Conread position:533-862
               
               
               Cow position:chr8:21220024-21220352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 69

               
               
               Conread position:533-862
               
               
               Cow position:chr8:23018637-23018319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr8:24328977-24328650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):30, 59

               
               
               Conread position:533-862
               
               
               Cow position:chr8:26008750-26009081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 80

               
               
               Conread position:533-862
               
               
               Cow position:chr8:27730912-27731237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:533-862
               
               
               Cow position:chr8:35971720-35972046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 116

               
               
               Conread position:533-862
               
               
               Cow position:chr8:36375639-36375325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr8:37391487-37391161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 58

               
               
               Conread position:533-862
               
               
               Cow position:chr8:39807464-39807797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr8:40280558-40280884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):105, 65

               
               
               Conread position:533-862
               
               
               Cow position:chr8:43112966-43112654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr8:46235573-46235903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 76

               
               
               Conread position:533-862
               
               
               Cow position:chr8:47284196-47283870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):24, 66

               
               
               Conread position:533-862
               
               
               Cow position:chr8:50310985-50310655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 119

               
               
               Conread position:533-862
               
               
               Cow position:chr8:54052179-54052494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):69, 89

               
               
               Conread position:533-862
               
               
               Cow position:chr8:55716630-55716948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:533-862
               
               
               Cow position:chr8:55884841-55885169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 92

               
               
               Conread position:533-862
               
               
               Cow position:chr8:55897935-55897621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):219, 42

               
               
               Conread position:533-862
               
               
               Cow position:chr8:59250602-59250921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):69, 77

               
               
               Conread position:533-864
               
               
               Cow position:chr8:11278246-11277906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 300

               
               
               Conread position:533-864
               
               
               Cow position:chr8:19995861-19995532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):66, 82

               
               
               Conread position:533-864
               
               
               Cow position:chr8:21858835-21858511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:533-864
               
               
               Cow position:chr8:28229592-28229277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):65, 58

               
               
               Conread position:533-864
               
               
               Cow position:chr8:32621122-32620780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 235

               
               
               Conread position:533-864
               
               
               Cow position:chr8:32854942-32854636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):182, 64

               
               
               Conread position:533-864
               
               
               Cow position:chr8:33406974-33406656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 64

               
               
               Conread position:533-864
               
               
               Cow position:chr8:38572404-38572071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 116

               
               
               Conread position:533-864
               
               
               Cow position:chr8:42794444-42794114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):66, 41

               
               
               Conread position:533-864
               
               
               Cow position:chr8:59766470-59766793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):69, 77

               
               
               Conread position:533-864
               
               
               Cow position:chr8:61537971-61537650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):152, 66

               
               
               Conread position:534-750
               
               
               Cow position:chr8:25388013-25388224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):65, 109

               
               
               Conread position:534-754
               
               
               Cow position:chr8:2897747-2897525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:534-774
               
               
               Cow position:chr8:37192240-37192474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 86

               
               
               Conread position:534-804
               
               
               Cow position:chr8:28313851-28313582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:534-836
               
               
               Cow position:chr8:37882214-37882515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):23, 119

               
               
               Conread position:534-846
               
               
               Cow position:chr8:29765127-29765449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):23, 229

               
               
               Conread position:534-846
               
               
               Cow position:chr8:35580765-35580455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 77

               
               
               Conread position:534-846
               
               
               Cow position:chr8:36055529-36055217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 54

               
               
               Conread position:534-853
               
               
               Cow position:chr8:1297383-1297699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):65, 47

               
               
               Conread position:534-860
               
               
               Cow position:chr8:10456336-10456657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 115

               
               
               Conread position:534-860
               
               
               Cow position:chr8:33640234-33640558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 7

               
               
               Conread position:534-861
               
               
               Cow position:chr8:1999489-1999828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):31, 229

               
               
               Conread position:534-862
               
               
               Cow position:chr8:3446228-3445900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:534-862
               
               
               Cow position:chr8:6233027-6232701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):65, 225

               
               
               Conread position:534-862
               
               
               Cow position:chr8:8324003-8323669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 121

               
               
               Conread position:534-862
               
               
               Cow position:chr8:15187125-15187447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 69

               
               
               Conread position:534-862
               
               
               Cow position:chr8:19284373-19284698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):65, 14

               
               
               Conread position:534-862
               
               
               Cow position:chr8:24867871-24867549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):268, 63

               
               
               Conread position:534-862
               
               
               Cow position:chr8:28228118-28228436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):22, 67

               
               
               Conread position:534-862
               
               
               Cow position:chr8:34769372-34769695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 103

               
               
               Conread position:534-862
               
               
               Cow position:chr8:37298349-37298675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):23, 60

               
               
               Conread position:534-862
               
               
               Cow position:chr8:54302899-54303209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):65, 99

               
               
               Conread position:534-862
               
               
               Cow position:chr8:61128826-61128504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 122

               
               
               Conread position:535-732
               
               
               Cow position:chr8:25579409-25579605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):64, 56

               
               
               Conread position:535-782
               
               
               Cow position:chr8:6531289-6531533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):64, 9

               
               
               Conread position:535-842
               
               
               Cow position:chr8:45447230-45446925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):64, 131

               
               
               Conread position:535-845
               
               
               Cow position:chr8:13660907-13661210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):248, 30

               
               
               Conread position:535-847
               
               
               Cow position:chr8:10400178-10400479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):111, 11

               
               
               Conread position:535-848
               
               
               Cow position:chr8:60126724-60127029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 98

               
               
               Conread position:535-859
               
               
               Cow position:chr8:59345693-59346014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):23, 119

               
               
               Conread position:535-860
               
               
               Cow position:chr8:1023836-1024155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 114

               
               
               Conread position:535-861
               
               
               Cow position:chr8:19642342-19642663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):24, 112

               
               
               Conread position:535-862
               
               
               Cow position:chr8:1303777-1304103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):62, 171

               
               
               Conread position:535-862
               
               
               Cow position:chr8:12058589-12058922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):30, 195

               
               
               Conread position:535-862
               
               
               Cow position:chr8:25349584-25349899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):80, 64

               
               
               Conread position:535-862
               
               
               Cow position:chr8:34259032-34259350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):23, 118

               
               
               Conread position:535-862
               
               
               Cow position:chr8:34477991-34478328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 113

               
               
               Conread position:535-862
               
               
               Cow position:chr8:43903637-43903970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):23, 56

               
               
               Conread position:535-862
               
               
               Cow position:chr8:48528091-48527767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):67, 42

               
               
               Conread position:535-862
               
               
               Cow position:chr8:52925845-52925535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):64, 112

               
               
               Conread position:535-862
               
               
               Cow position:chr8:54437142-54436813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:536-750
               
               
               Cow position:chr8:35211050-35210847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:536-792
               
               
               Cow position:chr8:18207261-18207015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):63, 89

               
               
               Conread position:536-804
               
               
               Cow position:chr8:20073310-20073042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):60, 75

               
               
               Conread position:539-782
               
               
               Cow position:chr8:5866952-5867195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):60, 79

               
               
               Conread position:539-807
               
               
               Cow position:chr8:39174370-39174101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 248

               
               
               Conread position:539-862
               
               
               Cow position:chr8:24371840-24371516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):68, 26

               
               
               Conread position:539-864
               
               
               Cow position:chr8:46952393-46952716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):26, 88

               
               
               Conread position:540-859
               
               
               Cow position:chr8:57397655-57397336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):59, 39

               
               
               Conread position:541-862
               
               
               Cow position:chr8:20212631-20212301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 118

               
               
               Conread position:542-816
               
               
               Cow position:chr8:58875942-58876220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):57, 241

               
               
               Conread position:542-860
               
               
               Cow position:chr8:9401802-9402122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 104

               
               
               Conread position:542-861
               
               
               Cow position:chr8:44449718-44449410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):212, 102

               
               
               Conread position:542-862
               
               
               Cow position:chr8:28321853-28322170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:543-808
               
               
               Cow position:chr8:54147544-54147808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):56, 77

               
               
               Conread position:543-862
               
               
               Cow position:chr8:12213893-12214196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):56, 79

               
               
               Conread position:543-862
               
               
               Cow position:chr8:19475206-19474883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 111

               
               
               Conread position:545-862
               
               
               Cow position:chr8:54031755-54032071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 161

               
               
               Conread position:546-862
               
               
               Cow position:chr8:18057634-18057926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):53, 94

               
               
               Conread position:546-862
               
               
               Cow position:chr8:37347577-37347252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):19, 305

               
               
               Conread position:547-860
               
               
               Cow position:chr8:834294-834608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):46, 189

               
               
               Conread position:548-843
               
               
               Cow position:chr8:53229915-53230195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:550-845
               
               
               Cow position:chr8:6224548-6224259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:550-862
               
               
               Cow position:chr8:19204558-19204246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:552-862
               
               
               Cow position:chr8:54177824-54177516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):50, 98

               
               
               Conread position:553-861
               
               
               Cow position:chr8:46874445-46874746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:554-782
               
               
               Cow position:chr8:14383298-14383070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):45, 71

               
               
               Conread position:555-861
               
               
               Cow position:chr8:4524975-4525272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 86

               
               
               Conread position:556-864
               
               
               Cow position:chr8:61067186-61067483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):46, 10

               
               
               Conread position:557-862
               
               
               Cow position:chr8:31985159-31985455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):175, 39

               
               
               Conread position:565-808
               
               
               Cow position:chr8:55871800-55871553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 210

               
               
               Conread position:565-862
               
               
               Cow position:chr8:46082069-46082361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):34, 146

               
               
               Conread position:565-862
               
               
               Cow position:chr8:57406662-57406965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 34

               
               
               Conread position:566-793
               
               
               Cow position:chr8:40579509-40579286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:566-861
               
               
               Cow position:chr8:36768377-36768674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 67

               
               
               Conread position:566-862
               
               
               Cow position:chr8:16144031-16144330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:566-862
               
               
               Cow position:chr8:52197556-52197259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 91

               
               
               Conread position:567-859
               
               
               Cow position:chr8:53552582-53552866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):35, 81

               
               
               Conread position:567-862
               
               
               Cow position:chr8:4203950-4203654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):32, 97

               
               
               Conread position:568-770
               
               
               Cow position:chr8:29262680-29262884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 150

               
               
               Conread position:568-823
               
               
               Cow position:chr8:17167471-17167727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):31, 47

               
               
               Conread position:569-742
               
               
               Cow position:chr8:1182969-1183139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 74

               
               
               Conread position:569-862
               
               
               Cow position:chr8:20911182-20910879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):36, 287

               
               
               Conread position:570-862
               
               
               Cow position:chr8:8097357-8097068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):32, 76

               
               
               Conread position:575-862
               
               
               Cow position:chr8:26284943-26284657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):31, 56

               
               
               Conread position:576-862
               
               
               Cow position:chr8:43940986-43940700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:577-862
               
               
               Cow position:chr8:16957544-16957808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):22, 11

               
               
               Conread position:583-787
               
               
               Cow position:chr8:20657443-20657239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):19, 67

               
               
               Conread position:583-862
               
               
               Cow position:chr8:18728705-18728980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):16, 97

               
               
               Conread position:583-862
               
               
               Cow position:chr8:61157317-61157034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):16, 207

               
               
               Conread position:584-806
               
               
               Cow position:chr8:15856891-15857114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):18, 214

               
               
               Conread position:586-864
               
               
               Cow position:chr8:53746653-53746373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):51, 13

               
               
               Conread position:587-863
               
               
               Cow position:chr8:45859732-45860009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):12, 46

               
               
               Conread position:588-862
               
               
               Cow position:chr8:32130161-32130428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):11, 56

               
               
               Conread position:589-862
               
               
               Cow position:chr8:49305820-49305551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):205, 10

               
               
               Conread position:590-845
               
               
               Cow position:chr8:20320419-20320669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):9, 56

               
               
               Conread position:590-862
               
               
               Cow position:chr8:21911565-21911840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 55

               
               
               Conread position:590-862
               
               
               Cow position:chr8:47169869-47170142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):12, 187

               
               
               Conread position:593-864
               
               
               Cow position:chr8:5468160-5467884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):124, 9

               
               
               Conread position:601-854
               
               
               Cow position:chr8:32278411-32278156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):51, 69

               
               
               Conread position:601-862
               
               
               Cow position:chr8:41219264-41219526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:603-784
               
               
               Cow position:chr8:6248936-6248757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:603-862
               
               
               Cow position:chr8:18171077-18170803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:604-807
               
               
               Cow position:chr8:47500743-47500947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):41, 184

               
               
               Conread position:604-862
               
               
               Cow position:chr8:36531661-36531402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):195, 35

               
               
               Conread position:604-862
               
               
               Cow position:chr8:52772872-52773131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 47

               
               
               Conread position:605-862
               
               
               Cow position:chr8:55089908-55089660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):41, 33

               
               
               Conread position:606-862
               
               
               Cow position:chr8:5437705-5437958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):31, 169

               
               
               Conread position:606-862
               
               
               Cow position:chr8:60339974-60339731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):153, 17

               
               
               Conread position:610-862
               
               
               Cow position:chr8:5729998-5730227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:610-862
               
               
               Cow position:chr8:58393509-58393755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:615-862
               
               
               Cow position:chr8:37559083-37559321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:615-864
               
               
               Cow position:chr8:9655528-9655772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):168, 34

               
               
               Conread position:617-862
               
               
               Cow position:chr8:11863906-11864148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):136, 31

               
               
               Conread position:627-861
               
               
               Cow position:chr8:34060200-34059966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):25, 160

               
               
               Conread position:633-864
               
               
               Cow position:chr8:55070691-55070917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:640-864
               
               
               Cow position:chr8:38639213-38639434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:647-862
               
               
               Cow position:chr8:3914574-3914795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):132, 122

               
               
               Conread position:651-862
               
               
               Cow position:chr8:3887319-3887529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):139, 195

               
               
               Conread position:661-861
               
               
               Cow position:chr8:28209979-28210182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:662-859
               
               
               Cow position:chr8:48555658-48555468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:662-862
               
               
               Cow position:chr8:24905464-24905675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):111, 7

               
               
               Conread position:662-862
               
               
               Cow position:chr8:55194171-55194372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):149, 114

               
               
               Conread position:662-864
               
               
               Cow position:chr8:47410080-47410281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):99, 93

               
               
               Conread position:663-862
               
               
               Cow position:chr8:11124563-11124369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):104, 52

               
               
               Conread position:676-862
               
               
               Cow position:chr8:6675209-6675391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:677-864
               
               
               Cow position:chr8:29934054-29934244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):78, 114

               
               
               Conread position:680-862
               
               
               Cow position:chr8:61848711-61848530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):124, 96

               
               
               Conread position:680-864
               
               
               Cow position:chr8:25640085-25639906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:684-862
               
               
               Cow position:chr8:30868709-30868532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:687-862
               
               
               Cow position:chr8:29173232-29173404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:692-861
               
               
               Cow position:chr8:3793180-3793349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):111, 92

               
               
               Conread position:515-862
               
               
               Cow position:chr9:8901035-8901386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 30

               
               
               Conread position:522-808
               
               
               Cow position:chr9:50543243-50543529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):80, 31

               
               
               Conread position:527-798
               
               
               Cow position:chr9:18072939-18073188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:527-862
               
               
               Cow position:chr9:17799805-17799478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):72, 225

               
               
               Conread position:527-862
               
               
               Cow position:chr9:22151909-22152239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):78, 15

               
               
               Conread position:527-862
               
               
               Cow position:chr9:30138304-30137966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):71, 214

               
               
               Conread position:527-864
               
               
               Cow position:chr9:53257881-53258215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 75

               
               
               Conread position:530-674
               
               
               Cow position:chr9:60037826-60037680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:530-812
               
               
               Cow position:chr9:62357356-62357634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):69, 139

               
               
               Conread position:530-862
               
               
               Cow position:chr9:17740775-17741096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):69, 89

               
               
               Conread position:530-862
               
               
               Cow position:chr9:18381032-18380711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):30, 51

               
               
               Conread position:530-862
               
               
               Cow position:chr9:22443449-22443780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:530-862
               
               
               Cow position:chr9:35027993-35028324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):31, 71

               
               
               Conread position:530-862
               
               
               Cow position:chr9:45285358-45285696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 21

               
               
               Conread position:530-862
               
               
               Cow position:chr9:60394878-60395206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):69, 104

               
               
               Conread position:530-864
               
               
               Cow position:chr9:13670805-13670477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):119, 65

               
               
               Conread position:530-864
               
               
               Cow position:chr9:34697124-34697461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):31, 112

               
               
               Conread position:531-808
               
               
               Cow position:chr9:51204892-51204624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):67, 77

               
               
               Conread position:531-864
               
               
               Cow position:chr9:21030484-21030145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):31, 125

               
               
               Conread position:531-864
               
               
               Cow position:chr9:29006733-29006401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 12

               
               
               Conread position:533-677
               
               
               Cow position:chr9:41652955-41652813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:533-695
               
               
               Cow position:chr9:1712307-1712467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):65, 76

               
               
               Conread position:533-732
               
               
               Cow position:chr9:38344060-38343862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 182

               
               
               Conread position:533-750
               
               
               Cow position:chr9:8534515-8534736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 72

               
               
               Conread position:533-754
               
               
               Cow position:chr9:23430976-23431198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):120, 64

               
               
               Conread position:533-754
               
               
               Cow position:chr9:35904576-35904796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):66, 111

               
               
               Conread position:533-761
               
               
               Cow position:chr9:44914918-44915154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):34, 94

               
               
               Conread position:533-774
               
               
               Cow position:chr9:5509891-5509655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):66, 76

               
               
               Conread position:533-774
               
               
               Cow position:chr9:19493293-19493536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):66, 223

               
               
               Conread position:533-786
               
               
               Cow position:chr9:44921221-44921484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-797
               
               
               Cow position:chr9:43871149-43870884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):23, 246

               
               
               Conread position:533-801
               
               
               Cow position:chr9:7634443-7634176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 237

               
               
               Conread position:533-802
               
               
               Cow position:chr9:28354688-28354421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):163, 66

               
               
               Conread position:533-803
               
               
               Cow position:chr9:21888339-21888071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):34, 120

               
               
               Conread position:533-803
               
               
               Cow position:chr9:64091854-64091582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):64, 121

               
               
               Conread position:533-807
               
               
               Cow position:chr9:3738052-3738325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):69, 95

               
               
               Conread position:533-807
               
               
               Cow position:chr9:42445809-42446083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):26, 255

               
               
               Conread position:533-807
               
               
               Cow position:chr9:50139455-50139182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 67

               
               
               Conread position:533-808
               
               
               Cow position:chr9:4267814-4268086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):66, 90

               
               
               Conread position:533-808
               
               
               Cow position:chr9:8563007-8562720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):66, 193

               
               
               Conread position:533-808
               
               
               Cow position:chr9:9654142-9654411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):66, 127

               
               
               Conread position:533-808
               
               
               Cow position:chr9:18216934-18217201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-809
               
               
               Cow position:chr9:1938299-1938021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):179, 29

               
               
               Conread position:533-811
               
               
               Cow position:chr9:31078915-31079182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):66, 9

               
               
               Conread position:533-824
               
               
               Cow position:chr9:46316616-46316899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 55

               
               
               Conread position:533-839
               
               
               Cow position:chr9:766983-767284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):66, 102

               
               
               Conread position:533-843
               
               
               Cow position:chr9:13205398-13205710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):89, 64

               
               
               Conread position:533-844
               
               
               Cow position:chr9:9403006-9403314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:533-845
               
               
               Cow position:chr9:9815585-9815270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):37, 86

               
               
               Conread position:533-845
               
               
               Cow position:chr9:33119716-33120031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:533-851
               
               
               Cow position:chr9:9552257-9551946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):69, 27

               
               
               Conread position:533-854
               
               
               Cow position:chr9:23388508-23388829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):64, 85

               
               
               Conread position:533-856
               
               
               Cow position:chr9:25964658-25964992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 103

               
               
               Conread position:533-858
               
               
               Cow position:chr9:44709995-44709679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):27, 118

               
               
               Conread position:533-861
               
               
               Cow position:chr9:6192293-6192613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):69, 45

               
               
               Conread position:533-861
               
               
               Cow position:chr9:11299521-11299829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 101

               
               
               Conread position:533-861
               
               
               Cow position:chr9:55118249-55117926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):66, 106

               
               
               Conread position:533-861
               
               
               Cow position:chr9:55287728-55288045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):98, 66

               
               
               Conread position:533-861
               
               
               Cow position:chr9:56773249-56772905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):66, 61

               
               
               Conread position:533-861
               
               
               Cow position:chr9:58979567-58979249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):67, 92

               
               
               Conread position:533-861
               
               
               Cow position:chr9:61303173-61302847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 242

               
               
               Conread position:533-862
               
               
               Cow position:chr9:5226998-5227317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):32, 174

               
               
               Conread position:533-862
               
               
               Cow position:chr9:5501027-5500707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):66, 228

               
               
               Conread position:533-862
               
               
               Cow position:chr9:8998526-8998196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):66, 224

               
               
               Conread position:533-862
               
               
               Cow position:chr9:9595785-9596107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:533-862
               
               
               Cow position:chr9:9723714-9724036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:533-862
               
               
               Cow position:chr9:9753219-9753559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 105

               
               
               Conread position:533-862
               
               
               Cow position:chr9:10118495-10118823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):66, 117

               
               
               Conread position:533-862
               
               
               Cow position:chr9:13169496-13169822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 9

               
               
               Conread position:533-862
               
               
               Cow position:chr9:15805755-15806083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):25, 43

               
               
               Conread position:533-862
               
               
               Cow position:chr9:19555544-19555232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):14, 92

               
               
               Conread position:533-862
               
               
               Cow position:chr9:20091211-20090903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):158, 57

               
               
               Conread position:533-862
               
               
               Cow position:chr9:26403955-26403638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):30, 118

               
               
               Conread position:533-862
               
               
               Cow position:chr9:26477386-26477055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):34, 116

               
               
               Conread position:533-862
               
               
               Cow position:chr9:28726551-28726886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-862
               
               
               Cow position:chr9:30124090-30123773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):66, 82

               
               
               Conread position:533-862
               
               
               Cow position:chr9:33218782-33219114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):93, 64

               
               
               Conread position:533-862
               
               
               Cow position:chr9:34286970-34286641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 30

               
               
               Conread position:533-862
               
               
               Cow position:chr9:34374762-34375084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):45, 70

               
               
               Conread position:533-862
               
               
               Cow position:chr9:34689433-34689762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):113, 6

               
               
               Conread position:533-862
               
               
               Cow position:chr9:35167342-35167012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 90

               
               
               Conread position:533-862
               
               
               Cow position:chr9:38793183-38792858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):33, 29

               
               
               Conread position:533-862
               
               
               Cow position:chr9:41679915-41679605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):65, 101

               
               
               Conread position:533-862
               
               
               Cow position:chr9:41728426-41728103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 21

               
               
               Conread position:533-862
               
               
               Cow position:chr9:42497999-42497671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 211

               
               
               Conread position:533-862
               
               
               Cow position:chr9:48628197-48627866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 55

               
               
               Conread position:533-862
               
               
               Cow position:chr9:52578367-52578695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):63, 50

               
               
               Conread position:533-862
               
               
               Cow position:chr9:56032159-56032474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):234, 16

               
               
               Conread position:533-863
               
               
               Cow position:chr9:64106077-64105745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):53, 255

               
               
               Conread position:533-864
               
               
               Cow position:chr9:10144306-10144645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):21, 119

               
               
               Conread position:533-864
               
               
               Cow position:chr9:30477611-30477931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:534-699
               
               
               Cow position:chr9:29034863-29035031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:534-753
               
               
               Cow position:chr9:43875553-43875768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):65, 26

               
               
               Conread position:534-754
               
               
               Cow position:chr9:24873000-24872785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):218, 62

               
               
               Conread position:534-782
               
               
               Cow position:chr9:60027366-60027119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):68, 40

               
               
               Conread position:534-789
               
               
               Cow position:chr9:5209749-5209498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):65, 94

               
               
               Conread position:534-791
               
               
               Cow position:chr9:5763465-5763717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:534-807
               
               
               Cow position:chr9:11319465-11319735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):65, 90

               
               
               Conread position:534-830
               
               
               Cow position:chr9:48106949-48107236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):24, 65

               
               
               Conread position:534-842
               
               
               Cow position:chr9:44831886-44832185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:534-844
               
               
               Cow position:chr9:20848100-20847802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):68, 188

               
               
               Conread position:534-860
               
               
               Cow position:chr9:29184964-29185295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):62, 231

               
               
               Conread position:534-860
               
               
               Cow position:chr9:51720733-51721042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):33, 128

               
               
               Conread position:534-861
               
               
               Cow position:chr9:5456005-5456328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 103

               
               
               Conread position:534-862
               
               
               Cow position:chr9:4341001-4341313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 98

               
               
               Conread position:534-862
               
               
               Cow position:chr9:5263669-5263347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):65, 43

               
               
               Conread position:534-862
               
               
               Cow position:chr9:5433807-5433488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):28, 121

               
               
               Conread position:534-862
               
               
               Cow position:chr9:11123316-11123637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):65, 29

               
               
               Conread position:534-862
               
               
               Cow position:chr9:12225812-12226142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):31, 66

               
               
               Conread position:534-862
               
               
               Cow position:chr9:17871935-17872264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 247

               
               
               Conread position:534-862
               
               
               Cow position:chr9:36490723-36491061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:534-862
               
               
               Cow position:chr9:55256382-55256706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 129

               
               
               Conread position:535-699
               
               
               Cow position:chr9:28773289-28773126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 116

               
               
               Conread position:535-808
               
               
               Cow position:chr9:9405883-9406155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):100, 64

               
               
               Conread position:535-845
               
               
               Cow position:chr9:39011309-39011610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:535-857
               
               
               Cow position:chr9:26279009-26279325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):64, 27

               
               
               Conread position:535-862
               
               
               Cow position:chr9:21459990-21460310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):108, 27

               
               
               Conread position:535-862
               
               
               Cow position:chr9:32307069-32307391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 90

               
               
               Conread position:535-862
               
               
               Cow position:chr9:36410188-36410507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 117

               
               
               Conread position:535-862
               
               
               Cow position:chr9:45141437-45141753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 14

               
               
               Conread position:535-862
               
               
               Cow position:chr9:55795924-55795601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):64, 27

               
               
               Conread position:536-809
               
               
               Cow position:chr9:50080879-50081143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):21, 103

               
               
               Conread position:536-861
               
               
               Cow position:chr9:19067944-19067613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):237, 49

               
               
               Conread position:536-862
               
               
               Cow position:chr9:34957888-34958209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 62

               
               
               Conread position:536-864
               
               
               Cow position:chr9:8723960-8723636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):108, 58

               
               
               Conread position:539-754
               
               
               Cow position:chr9:49292982-49293193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:168
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):60, 92

               
               
               Conread position:539-862
               
               
               Cow position:chr9:6397617-6397943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):19, 113

               
               
               Conread position:539-862
               
               
               Cow position:chr9:24887363-24887048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 107

               
               
               Conread position:539-862
               
               
               Cow position:chr9:25804998-25804671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 64

               
               
               Conread position:539-862
               
               
               Cow position:chr9:28747360-28747675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 41

               
               
               Conread position:539-863
               
               
               Cow position:chr9:12910238-12910558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 108

               
               
               Conread position:541-861
               
               
               Cow position:chr9:53762859-53762543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):96, 111

               
               
               Conread position:541-864
               
               
               Cow position:chr9:30402258-30402588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):20, 217

               
               
               Conread position:542-691
               
               
               Cow position:chr9:42509275-42509129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:542-861
               
               
               Cow position:chr9:10905653-10905976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 11

               
               
               Conread position:542-861
               
               
               Cow position:chr9:52637999-52638326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):16, 225

               
               
               Conread position:543-798
               
               
               Cow position:chr9:5219009-5219264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 97

               
               
               Conread position:543-862
               
               
               Cow position:chr9:20942449-20942776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):17, 108

               
               
               Conread position:543-862
               
               
               Cow position:chr9:26344809-26345119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:544-862
               
               
               Cow position:chr9:51620596-51620287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):55, 104

               
               
               Conread position:544-862
               
               
               Cow position:chr9:59013175-59013495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):92, 175

               
               
               Conread position:545-859
               
               
               Cow position:chr9:52267599-52267916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):57, 95

               
               
               Conread position:545-859
               
               
               Cow position:chr9:56453486-56453192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:545-860
               
               
               Cow position:chr9:9516611-9516903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:545-860
               
               
               Cow position:chr9:27279467-27279151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:546-862
               
               
               Cow position:chr9:43757694-43757387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):53, 63

               
               
               Conread position:553-843
               
               
               Cow position:chr9:7953049-7952759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):237, 44

               
               
               Conread position:554-862
               
               
               Cow position:chr9:32669799-32670103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):45, 94

               
               
               Conread position:558-802
               
               
               Cow position:chr9:6596090-6596328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 92

               
               
               Conread position:565-861
               
               
               Cow position:chr9:31359738-31359449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):142, 37

               
               
               Conread position:566-854
               
               
               Cow position:chr9:34284084-34283804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):33, 44

               
               
               Conread position:566-862
               
               
               Cow position:chr9:6189235-6189520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):36, 82

               
               
               Conread position:566-862
               
               
               Cow position:chr9:34410259-34410550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):33, 67

               
               
               Conread position:566-862
               
               
               Cow position:chr9:40005612-40005320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:567-861
               
               
               Cow position:chr9:41283149-41282856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:567-862
               
               
               Cow position:chr9:13743797-13744091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):32, 78

               
               
               Conread position:569-862
               
               
               Cow position:chr9:8636803-8636521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):30, 84

               
               
               Conread position:570-860
               
               
               Cow position:chr9:44822177-44822477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):63, 29

               
               
               Conread position:583-860
               
               
               Cow position:chr9:9311979-9311704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):19, 8

               
               
               Conread position:583-862
               
               
               Cow position:chr9:6952226-6951955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 132

               
               
               Conread position:585-859
               
               
               Cow position:chr9:33584565-33584838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):14, 90

               
               
               Conread position:585-862
               
               
               Cow position:chr9:53109370-53109094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):14, 126

               
               
               Conread position:585-862
               
               
               Cow position:chr9:58131846-58132105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):17, 60

               
               
               Conread position:586-864
               
               
               Cow position:chr9:38941315-38941596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):16, 60

               
               
               Conread position:586-864
               
               
               Cow position:chr9:54493254-54492979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):13, 9

               
               
               Conread position:587-861
               
               
               Cow position:chr9:17840561-17840835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):62, 17

               
               
               Conread position:589-862
               
               
               Cow position:chr9:23955870-23956134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):10, 59

               
               
               Conread position:593-799
               
               
               Cow position:chr9:28754929-28754724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):6, 181

               
               
               Conread position:594-809
               
               
               Cow position:chr9:32981963-32982180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):5, 56

               
               
               Conread position:601-862
               
               
               Cow position:chr9:9460076-9459832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):91, 43

               
               
               Conread position:602-861
               
               
               Cow position:chr9:29194923-29195188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):170, 19

               
               
               Conread position:609-862
               
               
               Cow position:chr9:8628823-8629069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:610-862
               
               
               Cow position:chr9:37199215-37198970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):197, 33

               
               
               Conread position:614-863
               
               
               Cow position:chr9:34024789-34024541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:615-862
               
               
               Cow position:chr9:9686327-9686575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):175, 23

               
               
               Conread position:624-862
               
               
               Cow position:chr9:33823199-33822960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):25, 226

               
               
               Conread position:640-862
               
               
               Cow position:chr9:12337965-12337743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):170, 9

               
               
               Conread position:641-861
               
               
               Cow position:chr9:57131558-57131342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:641-862
               
               
               Cow position:chr9:63361656-63361868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:651-862
               
               
               Cow position:chr9:22440429-22440630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):120, 62

               
               
               Conread position:651-862
               
               
               Cow position:chr9:43159805-43159598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:651-864
               
               
               Cow position:chr9:5104350-5104569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):138, 75

               
               
               Conread position:653-860
               
               
               Cow position:chr9:52518772-52518976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):44, 107

               
               
               Conread position:661-862
               
               
               Cow position:chr9:5342205-5342403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:661-862
               
               
               Cow position:chr9:21292364-21292564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):36, 126

               
               
               Conread position:661-862
               
               
               Cow position:chr9:22165670-22165874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:661-862
               
               
               Cow position:chr9:59897632-59897439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:663-862
               
               
               Cow position:chr9:4241447-4241250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):95, 122

               
               
               Conread position:663-864
               
               
               Cow position:chr9:36628159-36627963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:664-864
               
               
               Cow position:chr9:42586516-42586707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:672-862
               
               
               Cow position:chr9:12773721-12773537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:675-862
               
               
               Cow position:chr9:24079331-24079148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:680-862
               
               
               Cow position:chr9:19718316-19718491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 74

               
               
               Conread position:680-862
               
               
               Cow position:chr9:34707288-34707467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:680-862
               
               
               Cow position:chr9:40603692-40603510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):35, 40

               
               
               Conread position:680-862
               
               
               Cow position:chr9:42508856-42508671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):53, 105

               
               
               Conread position:682-862
               
               
               Cow position:chr9:26394328-26394505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:686-862
               
               
               Cow position:chr9:40984523-40984347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):125, 99

               
               
               Conread position:687-862
               
               
               Cow position:chr9:32052293-32052119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):142, 97

               
               
               Conread position:688-862
               
               
               Cow position:chr9:19771378-19771203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 36

               
               
               Conread position:715-862
               
               
               Cow position:chr9:12269019-12268878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:526-862
               
               
               Cow position:chrX:8730965-8731309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:239
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):38, 85

               
               
               Conread position:527-790
               
               
               Cow position:chrX:39558469-39558210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 8

               
               
               Conread position:527-823
               
               
               Cow position:chrX:878497-878207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):97, 70

               
               
               Conread position:527-858
               
               
               Cow position:chrX:40035562-40035228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 44

               
               
               Conread position:527-862
               
               
               Cow position:chrX:34792429-34792108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):7, 122

               
               
               Conread position:528-862
               
               
               Cow position:chrX:42381221-42380897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):37, 58

               
               
               Conread position:529-846
               
               
               Cow position:chrX:14275852-14275549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):109, 44

               
               
               Conread position:529-862
               
               
               Cow position:chrX:40826873-40826535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):16, 108

               
               
               Conread position:529-862
               
               
               Cow position:chrX:46587699-46588035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 229

               
               
               Conread position:530-789
               
               
               Cow position:chrX:37986116-37986366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):101, 63

               
               
               Conread position:530-807
               
               
               Cow position:chrX:11717901-11717626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 33

               
               
               Conread position:530-862
               
               
               Cow position:chrX:4632969-4632639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):27, 72

               
               
               Conread position:530-862
               
               
               Cow position:chrX:20340005-20339680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):69, 21

               
               
               Conread position:530-862
               
               
               Cow position:chrX:33855350-33855011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):69, 224

               
               
               Conread position:530-862
               
               
               Cow position:chrX:37072291-37072601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:530-862
               
               
               Cow position:chrX:45502035-45502350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):155, 45

               
               
               Conread position:530-864
               
               
               Cow position:chrX:24331661-24331994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 135

               
               
               Conread position:531-750
               
               
               Cow position:chrX:7509026-7509241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):67, 117

               
               
               Conread position:531-754
               
               
               Cow position:chrX:21566286-21566513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:531-794
               
               
               Cow position:chrX:7571788-7572050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:531-844
               
               
               Cow position:chrX:6413928-6414234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):24, 122

               
               
               Conread position:531-862
               
               
               Cow position:chrX:27432030-27431709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):67, 109

               
               
               Conread position:531-862
               
               
               Cow position:chrX:38094639-38094311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):34, 184

               
               
               Conread position:532-758
               
               
               Cow position:chrX:45414415-45414193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):67, 115

               
               
               Conread position:532-862
               
               
               Cow position:chrX:41526636-41526319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:532-862
               
               
               Cow position:chrX:44054687-44055018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 123

               
               
               Conread position:533-694
               
               
               Cow position:chrX:34990921-34991082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):105, 66

               
               
               Conread position:533-711
               
               
               Cow position:chrX:13785477-13785297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-711
               
               
               Cow position:chrX:26875997-26875818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-711
               
               
               Cow position:chrX:34192559-34192733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:533-774
               
               
               Cow position:chrX:11939041-11938807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):157, 66

               
               
               Conread position:533-782
               
               
               Cow position:chrX:37232299-37232541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):66, 112

               
               
               Conread position:533-783
               
               
               Cow position:chrX:42171410-42171162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):66, 213

               
               
               Conread position:533-788
               
               
               Cow position:chrX:9365789-9365536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):66, 92

               
               
               Conread position:533-789
               
               
               Cow position:chrX:7646142-7646397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):179, 59

               
               
               Conread position:533-790
               
               
               Cow position:chrX:45845985-45846244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):66, 156

               
               
               Conread position:533-790
               
               
               Cow position:chrX:48014327-48014578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):104, 27

               
               
               Conread position:533-803
               
               
               Cow position:chrX:31311915-31312182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):105, 66

               
               
               Conread position:533-804
               
               
               Cow position:chrX:23091767-23092027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):124, 31

               
               
               Conread position:533-804
               
               
               Cow position:chrX:34401884-34402162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 132

               
               
               Conread position:533-806
               
               
               Cow position:chrX:39415481-39415212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):48, 65

               
               
               Conread position:533-808
               
               
               Cow position:chrX:616376-616098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):66, 120

               
               
               Conread position:533-808
               
               
               Cow position:chrX:619118-618848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):66, 194

               
               
               Conread position:533-808
               
               
               Cow position:chrX:17725860-17726134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):66, 117

               
               
               Conread position:533-808
               
               
               Cow position:chrX:29680374-29680104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 129

               
               
               Conread position:533-808
               
               
               Cow position:chrX:34502808-34503080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):66, 126

               
               
               Conread position:533-808
               
               
               Cow position:chrX:40269374-40269652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-809
               
               
               Cow position:chrX:36067903-36068178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):66, 16

               
               
               Conread position:533-813
               
               
               Cow position:chrX:38006878-38006605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):66, 127

               
               
               Conread position:533-818
               
               
               Cow position:chrX:14599419-14599704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):66, 92

               
               
               Conread position:533-827
               
               
               Cow position:chrX:24288038-24287753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 32

               
               
               Conread position:533-836
               
               
               Cow position:chrX:40557795-40557490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):66, 295

               
               
               Conread position:533-837
               
               
               Cow position:chrX:31252304-31252598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:533-838
               
               
               Cow position:chrX:34532407-34532709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):65, 76

               
               
               Conread position:533-845
               
               
               Cow position:chrX:7721875-7722175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 47

               
               
               Conread position:533-850
               
               
               Cow position:chrX:13647899-13647581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 82

               
               
               Conread position:533-852
               
               
               Cow position:chrX:21642592-21642276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 46

               
               
               Conread position:533-852
               
               
               Cow position:chrX:47484382-47484057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):30, 122

               
               
               Conread position:533-853
               
               
               Cow position:chrX:23514129-23513801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):66, 87

               
               
               Conread position:533-854
               
               
               Cow position:chrX:31294671-31294362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:533-857
               
               
               Cow position:chrX:35542781-35543094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):66, 86

               
               
               Conread position:533-859
               
               
               Cow position:chrX:34565169-34565497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:533-860
               
               
               Cow position:chrX:1616158-1615845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):65, 168

               
               
               Conread position:533-860
               
               
               Cow position:chrX:13177579-13177271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):143, 62

               
               
               Conread position:533-860
               
               
               Cow position:chrX:38963991-38964310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:533-861
               
               
               Cow position:chrX:11633564-11633896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):26, 109

               
               
               Conread position:533-861
               
               
               Cow position:chrX:22074686-22075009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):134, 64

               
               
               Conread position:533-861
               
               
               Cow position:chrX:25816014-25815685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):104, 28

               
               
               Conread position:533-861
               
               
               Cow position:chrX:34543672-34544000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):37, 68

               
               
               Conread position:533-861
               
               
               Cow position:chrX:35273242-35273586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):65, 52

               
               
               Conread position:533-861
               
               
               Cow position:chrX:43115037-43115363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 92

               
               
               Conread position:533-862
               
               
               Cow position:chrX:4399015-4399333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):113, 67

               
               
               Conread position:533-862
               
               
               Cow position:chrX:5118616-5118283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 80

               
               
               Conread position:533-862
               
               
               Cow position:chrX:6544142-6544460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):110, 94

               
               
               Conread position:533-862
               
               
               Cow position:chrX:9201436-9201758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 117

               
               
               Conread position:533-862
               
               
               Cow position:chrX:11655978-11656293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 90

               
               
               Conread position:533-862
               
               
               Cow position:chrX:12979941-12979620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):123, 66

               
               
               Conread position:533-862
               
               
               Cow position:chrX:13912965-13913290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):120, 32

               
               
               Conread position:533-862
               
               
               Cow position:chrX:15007264-15006944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 129

               
               
               Conread position:533-862
               
               
               Cow position:chrX:16762652-16762983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):31, 70

               
               
               Conread position:533-862
               
               
               Cow position:chrX:20584210-20584527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 246

               
               
               Conread position:533-862
               
               
               Cow position:chrX:21986406-21986086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):66, 158

               
               
               Conread position:533-862
               
               
               Cow position:chrX:25207957-25207646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):32, 71

               
               
               Conread position:533-862
               
               
               Cow position:chrX:26881682-26881347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 223

               
               
               Conread position:533-862
               
               
               Cow position:chrX:29542333-29542013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):65, 208

               
               
               Conread position:533-862
               
               
               Cow position:chrX:29601944-29601614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-862
               
               
               Cow position:chrX:30962988-30962660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 101

               
               
               Conread position:533-862
               
               
               Cow position:chrX:31442936-31442624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):24, 65

               
               
               Conread position:533-862
               
               
               Cow position:chrX:31729329-31729652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):69, 33

               
               
               Conread position:533-862
               
               
               Cow position:chrX:32820914-32821255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):24, 119

               
               
               Conread position:533-862
               
               
               Cow position:chrX:34315411-34315742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):109, 32

               
               
               Conread position:533-862
               
               
               Cow position:chrX:34411730-34412063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 16

               
               
               Conread position:533-862
               
               
               Cow position:chrX:34554610-34554939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 68

               
               
               Conread position:533-862
               
               
               Cow position:chrX:38218597-38218928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):94, 29

               
               
               Conread position:533-862
               
               
               Cow position:chrX:38853084-38853426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):250, 96

               
               
               Conread position:533-862
               
               
               Cow position:chrX:40320291-40320622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 116

               
               
               Conread position:533-862
               
               
               Cow position:chrX:40685445-40685114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:533-862
               
               
               Cow position:chrX:41027043-41027375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):24, 31

               
               
               Conread position:533-862
               
               
               Cow position:chrX:42247299-42246966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:533-862
               
               
               Cow position:chrX:42927933-42927615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:533-864
               
               
               Cow position:chrX:22482800-22482472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 64

               
               
               Conread position:533-864
               
               
               Cow position:chrX:27705467-27705804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):23, 98

               
               
               Conread position:533-864
               
               
               Cow position:chrX:37781225-37780895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 227

               
               
               Conread position:533-864
               
               
               Cow position:chrX:41870959-41871274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:533-864
               
               
               Cow position:chrX:45976806-45977141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):33, 248

               
               
               Conread position:534-774
               
               
               Cow position:chrX:42470054-42469815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):110, 41

               
               
               Conread position:534-778
               
               
               Cow position:chrX:33539052-33539300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):64, 108

               
               
               Conread position:534-806
               
               
               Cow position:chrX:1503225-1503484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:534-808
               
               
               Cow position:chrX:27394132-27393868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):65, 32

               
               
               Conread position:534-809
               
               
               Cow position:chrX:33493665-33493936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):65, 34

               
               
               Conread position:534-822
               
               
               Cow position:chrX:7710656-7710362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 116

               
               
               Conread position:534-852
               
               
               Cow position:chrX:11844360-11844035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):33, 68

               
               
               Conread position:534-854
               
               
               Cow position:chrX:41068610-41068927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 7

               
               
               Conread position:534-859
               
               
               Cow position:chrX:12309498-12309173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):33, 10

               
               
               Conread position:534-860
               
               
               Cow position:chrX:46072933-46072617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):65, 254

               
               
               Conread position:534-862
               
               
               Cow position:chrX:4403201-4403533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):24, 69

               
               
               Conread position:534-862
               
               
               Cow position:chrX:4768631-4768943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):80, 28

               
               
               Conread position:534-862
               
               
               Cow position:chrX:8925588-8925895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):65, 112

               
               
               Conread position:534-862
               
               
               Cow position:chrX:10831606-10831266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):65, 235

               
               
               Conread position:534-862
               
               
               Cow position:chrX:25035497-25035166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):31, 104

               
               
               Conread position:534-862
               
               
               Cow position:chrX:29723628-29723966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 114

               
               
               Conread position:534-862
               
               
               Cow position:chrX:38549339-38549661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):65, 27

               
               
               Conread position:534-862
               
               
               Cow position:chrX:38654543-38654217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):65, 50

               
               
               Conread position:534-862
               
               
               Cow position:chrX:41879045-41878722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 57

               
               
               Conread position:534-864
               
               
               Cow position:chrX:9651138-9650810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):238, 247

               
               
               Conread position:535-670
               
               
               Cow position:chrX:4750416-4750281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:535-754
               
               
               Cow position:chrX:26625782-26625565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):110, 62

               
               
               Conread position:535-780
               
               
               Cow position:chrX:19273834-19273575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):64, 233

               
               
               Conread position:535-784
               
               
               Cow position:chrX:29120934-29121183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):67, 110

               
               
               Conread position:535-784
               
               
               Cow position:chrX:30543399-30543148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):64, 27

               
               
               Conread position:535-808
               
               
               Cow position:chrX:5017526-5017263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):64, 164

               
               
               Conread position:535-816
               
               
               Cow position:chrX:42235640-42235353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):32, 26

               
               
               Conread position:535-823
               
               
               Cow position:chrX:41884526-41884239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):64, 249

               
               
               Conread position:535-844
               
               
               Cow position:chrX:5919384-5919689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):211, 59

               
               
               Conread position:535-858
               
               
               Cow position:chrX:27145511-27145810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):64, 75

               
               
               Conread position:535-861
               
               
               Cow position:chrX:12249691-12250029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):39, 46

               
               
               Conread position:535-862
               
               
               Cow position:chrX:6407437-6407759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):117, 54

               
               
               Conread position:535-862
               
               
               Cow position:chrX:30133434-30133109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 222

               
               
               Conread position:535-862
               
               
               Cow position:chrX:31436366-31436684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:535-862
               
               
               Cow position:chrX:32420107-32420426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):25, 91

               
               
               Conread position:535-862
               
               
               Cow position:chrX:45430128-45429815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:535-864
               
               
               Cow position:chrX:14884070-14883740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 230

               
               
               Conread position:536-809
               
               
               Cow position:chrX:8797141-8797408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):27, 164

               
               
               Conread position:536-816
               
               
               Cow position:chrX:29194123-29194398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):231, 111

               
               
               Conread position:536-864
               
               
               Cow position:chrX:29544989-29544669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):22, 112

               
               
               Conread position:537-774
               
               
               Cow position:chrX:35224187-35224422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):62, 9

               
               
               Conread position:538-778
               
               
               Cow position:chrX:37574742-37574970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):221, 50

               
               
               Conread position:538-861
               
               
               Cow position:chrX:47344186-47344513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):61, 43

               
               
               Conread position:539-861
               
               
               Cow position:chrX:35822234-35822545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 112

               
               
               Conread position:539-862
               
               
               Cow position:chrX:29229902-29230222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):66, 92

               
               
               Conread position:539-862
               
               
               Cow position:chrX:34505155-34504838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 57

               
               
               Conread position:540-771
               
               
               Cow position:chrX:45403937-45403704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 217

               
               
               Conread position:540-862
               
               
               Cow position:chrX:8869509-8869189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 23

               
               
               Conread position:541-807
               
               
               Cow position:chrX:6690363-6690101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 49

               
               
               Conread position:541-845
               
               
               Cow position:chrX:169646-169343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):16, 52

               
               
               Conread position:541-861
               
               
               Cow position:chrX:17231625-17231951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):26, 50

               
               
               Conread position:542-852
               
               
               Cow position:chrX:31949041-31948729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):23, 57

               
               
               Conread position:542-862
               
               
               Cow position:chrX:26492901-26493222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 105

               
               
               Conread position:542-862
               
               
               Cow position:chrX:34376842-34377154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 43

               
               
               Conread position:543-749
               
               
               Cow position:chrX:31515065-31515275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 72

               
               
               Conread position:543-809
               
               
               Cow position:chrX:45174745-45175011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):54, 32

               
               
               Conread position:543-861
               
               
               Cow position:chrX:33000799-33001112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 89

               
               
               Conread position:543-862
               
               
               Cow position:chrX:12290622-12290933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):14, 52

               
               
               Conread position:543-864
               
               
               Cow position:chrX:17794879-17795196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):113, 52

               
               
               Conread position:544-862
               
               
               Cow position:chrX:24365930-24365607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 206

               
               
               Conread position:545-860
               
               
               Cow position:chrX:46291036-46291354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):54, 80

               
               
               Conread position:545-864
               
               
               Cow position:chrX:34313927-34314238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 98

               
               
               Conread position:547-861
               
               
               Cow position:chrX:15231758-15231445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):11, 56

               
               
               Conread position:548-862
               
               
               Cow position:chrX:10516157-10516469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):107, 45

               
               
               Conread position:548-864
               
               
               Cow position:chrX:45110557-45110868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):51, 88

               
               
               Conread position:550-862
               
               
               Cow position:chrX:9252256-9251948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):49, 10

               
               
               Conread position:551-862
               
               
               Cow position:chrX:42855360-42855678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:551-864
               
               
               Cow position:chrX:34837150-34836855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):208, 36

               
               
               Conread position:552-862
               
               
               Cow position:chrX:38560462-38560765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):44, 74

               
               
               Conread position:553-862
               
               
               Cow position:chrX:47345240-47345545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:555-862
               
               
               Cow position:chrX:161321-161615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):44, 71

               
               
               Conread position:555-862
               
               
               Cow position:chrX:1466069-1466378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 85

               
               
               Conread position:556-845
               
               
               Cow position:chrX:918818-918528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 178

               
               
               Conread position:556-862
               
               
               Cow position:chrX:29050156-29050457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 150

               
               
               Conread position:556-862
               
               
               Cow position:chrX:31250296-31250605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 94

               
               
               Conread position:559-862
               
               
               Cow position:chrX:41238439-41238147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:565-803
               
               
               Cow position:chrX:5135607-5135367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):40, 216

               
               
               Conread position:565-862
               
               
               Cow position:chrX:41192626-41192904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 34

               
               
               Conread position:566-858
               
               
               Cow position:chrX:4296900-4296613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 67

               
               
               Conread position:566-862
               
               
               Cow position:chrX:27261107-27261405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 26

               
               
               Conread position:566-862
               
               
               Cow position:chrX:40680530-40680830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 190

               
               
               Conread position:566-862
               
               
               Cow position:chrX:48071080-48071377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 53

               
               
               Conread position:567-862
               
               
               Cow position:chrX:39220000-39220303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):218, 86

               
               
               Conread position:568-862
               
               
               Cow position:chrX:22115396-22115099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):12, 73

               
               
               Conread position:568-864
               
               
               Cow position:chrX:36866092-36866390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):31, 85

               
               
               Conread position:569-838
               
               
               Cow position:chrX:4515606-4515879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:569-862
               
               
               Cow position:chrX:4153113-4152829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):30, 207

               
               
               Conread position:575-862
               
               
               Cow position:chrX:1088208-1087933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:578-809
               
               
               Cow position:chrX:32623498-32623731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):21, 202

               
               
               Conread position:581-863
               
               
               Cow position:chrX:4279183-4278903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):21, 59

               
               
               Conread position:582-862
               
               
               Cow position:chrX:20957184-20957454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):206, 57

               
               
               Conread position:583-859
               
               
               Cow position:chrX:12437334-12437071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 74

               
               
               Conread position:587-788
               
               
               Cow position:chrX:46429881-46429679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):6, 13

               
               
               Conread position:590-864
               
               
               Cow position:chrX:19469563-19469298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):13, 73

               
               
               Conread position:592-862
               
               
               Cow position:chrX:5134420-5134689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):10, 60

               
               
               Conread position:593-862
               
               
               Cow position:chrX:35985764-35986030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):6, 108

               
               
               Conread position:598-862
               
               
               Cow position:chrX:22393034-22392773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:601-862
               
               
               Cow position:chrX:27306407-27306654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:602-862
               
               
               Cow position:chrX:6599828-6599559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):188, 0

               
               
               Conread position:603-862
               
               
               Cow position:chrX:11326143-11325893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):62, 153

               
               
               Conread position:606-861
               
               
               Cow position:chrX:24749047-24749301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):179, 43

               
               
               Conread position:606-862
               
               
               Cow position:chrX:16984587-16984850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):29, 161

               
               
               Conread position:609-864
               
               
               Cow position:chrX:19394515-19394772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):164, 40

               
               
               Conread position:610-862
               
               
               Cow position:chrX:40532080-40531811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):157, 39

               
               
               Conread position:614-862
               
               
               Cow position:chrX:38642217-38642457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:620-864
               
               
               Cow position:chrX:28940219-28940461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):117, 31

               
               
               Conread position:631-862
               
               
               Cow position:chrX:16836303-16836079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:632-862
               
               
               Cow position:chrX:43008593-43008825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):140, 122

               
               
               Conread position:635-862
               
               
               Cow position:chrX:12972668-12972893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):39, 144

               
               
               Conread position:635-862
               
               
               Cow position:chrX:32943090-32942865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 209

               
               
               Conread position:643-862
               
               
               Cow position:chrX:2935952-2936168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:643-862
               
               
               Cow position:chrX:10252203-10251987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):52, 71

               
               
               Conread position:650-860
               
               
               Cow position:chrX:41941625-41941836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):117, 102

               
               
               Conread position:651-862
               
               
               Cow position:chrX:39290362-39290570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):190, 112

               
               
               Conread position:661-862
               
               
               Cow position:chrX:3806695-3806893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):106, 93

               
               
               Conread position:661-862
               
               
               Cow position:chrX:38587830-38587630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):127, 189

               
               
               Conread position:661-862
               
               
               Cow position:chrX:42450001-42449798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):91, 100

               
               
               Conread position:662-862
               
               
               Cow position:chrX:27668944-27668747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:662-864
               
               
               Cow position:chrX:29467764-29467565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:663-862
               
               
               Cow position:chrX:32208807-32208612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:664-845
               
               
               Cow position:chrX:20583682-20583861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 90

               
               
               Conread position:664-862
               
               
               Cow position:chrX:31479987-31480181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:673-859
               
               
               Cow position:chrX:32866900-32867082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:674-862
               
               
               Cow position:chrX:41453328-41453514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:680-862
               
               
               Cow position:chrX:8326936-8327120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:680-862
               
               
               Cow position:chrX:23359079-23358902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:680-862
               
               
               Cow position:chrX:41858849-41858669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:683-862
               
               
               Cow position:chrX:34991399-34991576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):77, 72

               
               
               Conread position:685-862
               
               
               Cow position:chrX:6480559-6480380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:689-861
               
               
               Cow position:chrX:31983544-31983364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:690-862
               
               
               Cow position:chrX:23471824-23471653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:702-864
               
               
               Cow position:chrX:42875266-42875426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:715-862
               
               
               Cow position:chrX:14135745-14135890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:717-862
               
               
               Cow position:chrX:4486955-4486809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:719-862
               
               
               Cow position:chrX:40556388-40556248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 66

               
               
               Conread position:729-862
               
               
               Cow position:chrX:31279843-31279712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):55, 0