Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8024N09.3 |
| Conread position: | 18-178 |
| Cow position: | chr10:48643745-48643904 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 83, 63 |
| Conread position: | 19-369 |
| Cow position: | chr10:35361400-35361054 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 132 |
| Conread position: | 89-233 |
| Cow position: | chr10:61515068-61514918 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 19-176 |
| Cow position: | chr11:19684065-19683895 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 89, 51 |
| Conread position: | 24-369 |
| Cow position: | chr11:19674540-19674179 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 266 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 84, 26 |
| Conread position: | 19-369 |
| Cow position: | chr12:35146215-35146557 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 22-349 |
| Cow position: | chr12:38389301-38388983 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 158, 49 |
| Conread position: | 57-355 |
| Cow position: | chr12:48078497-48078804 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 28 |
| Conread position: | 18-178 |
| Cow position: | chr13:44411976-44412138 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 90, 118 |
| Conread position: | 18-242 |
| Cow position: | chr13:36326276-36326505 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 90, 32 |
| Conread position: | 13-369 |
| Cow position: | chr14:17931245-17930909 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 159, 82 |
| Conread position: | 18-260 |
| Cow position: | chr14:33454905-33455154 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 116, 122 |
| Conread position: | 22-178 |
| Cow position: | chr16:30029757-30029594 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 163-367 |
| Cow position: | chr17:19122584-19122372 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 18-176 |
| Cow position: | chr18:21336287-21336121 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 75, 158 |
| Conread position: | 18-176 |
| Cow position: | chr18:24101294-24101130 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 90, 160 |
| Conread position: | 18-178 |
| Cow position: | chr18:5007016-5007174 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 91, 17 |
| Conread position: | 18-369 |
| Cow position: | chr19:54684890-54684521 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 19-275 |
| Cow position: | chr19:33886599-33886336 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 13 |
| Conread position: | 176-369 |
| Cow position: | chr19:44519194-44518995 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 101, 18 |
| Conread position: | 17-178 |
| Cow position: | chr2:9674311-9674135 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 44-178 |
| Cow position: | chr2:46579093-46579230 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 64, 43 |
| Conread position: | 50-366 |
| Cow position: | chr2:68632945-68633257 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 130, 59 |
| Conread position: | 18-176 |
| Cow position: | chr20:34993638-34993797 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 123, 73 |
| Conread position: | 18-344 |
| Cow position: | chr20:35205021-35205357 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 16 |
| Conread position: | 19-178 |
| Cow position: | chr21:41534279-41534442 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 137 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 24-178 |
| Cow position: | chr21:35196156-35195995 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 176-370 |
| Cow position: | chr21:35894978-35894782 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 74, 12 |
| Conread position: | 24-178 |
| Cow position: | chr22:10088708-10088555 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 116, 25 |
| Conread position: | 18-178 |
| Cow position: | chr23:40758661-40758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 90, 80 |
| Conread position: | 19-178 |
| Cow position: | chr23:36419423-36419587 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 18-178 |
| Cow position: | chr24:6103437-6103272 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 156-369 |
| Cow position: | chr24:6103277-6103062 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 88 |
| Conread position: | 21-368 |
| Cow position: | chr26:1060361-1059997 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 85, 102 |
| Conread position: | 18-369 |
| Cow position: | chr27:24761317-24760950 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 90, 192 |
| Conread position: | 18-369 |
| Cow position: | chr27:25298262-25298624 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 177 |
| Conread position: | 13-171 |
| Cow position: | chr29:5972539-5972707 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 13-178 |
| Cow position: | chr29:17363179-17363016 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 95, 33 |
| Conread position: | 18-178 |
| Cow position: | chr29:16749695-16749527 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 18-178 |
| Cow position: | chr29:17683411-17683243 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 19-179 |
| Cow position: | chr29:438268-438434 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 20-178 |
| Cow position: | chr29:10624062-10624216 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 86, 112 |
| Conread position: | 139-369 |
| Cow position: | chr29:13563798-13564039 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 7, 149 |
| Conread position: | 18-167 |
| Cow position: | chr3:78196341-78196495 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 90, 73 |
| Conread position: | 23-177 |
| Cow position: | chr3:59003971-59003813 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 93, 131 |
| Conread position: | 176-369 |
| Cow position: | chr3:30995686-30995490 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 122, 25 |
| Conread position: | 18-178 |
| Cow position: | chr4:11164848-11164682 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 19-178 |
| Cow position: | chr4:28697309-28697472 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 95, 47 |
| Conread position: | 18-178 |
| Cow position: | chr5:2474338-2474507 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 171-369 |
| Cow position: | chr5:9819647-9819852 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 7, 31 |
| Conread position: | 24-369 |
| Cow position: | chr6:59195322-59194946 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 264 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 18-185 |
| Cow position: | chr7:39963425-39963601 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 19-176 |
| Cow position: | chr7:8301037-8301198 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 95, 32 |
| Conread position: | 19-178 |
| Cow position: | chr7:44949484-44949327 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 89, 121 |
| Conread position: | 176-367 |
| Cow position: | chr7:15387512-15387314 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 74, 25 |
| Conread position: | 13-178 |
| Cow position: | chr8:9478313-9478483 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 18-192 |
| Cow position: | chr8:51963262-51963443 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 88, 57 |
| Conread position: | 24-369 |
| Cow position: | chr8:32338789-32339127 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 154, 85 |
| Conread position: | 183-369 |
| Cow position: | chr8:61278415-61278606 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 68, 16 |
| Conread position: | 75-394 |
| Cow position: | chrX:42548682-42549005 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 8, 61 |