Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8025A24.3 |
| Conread position: | 7-179 |
| Cow position: | chr10:49930926-49930753 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 103 |
| Conread position: | 11-474 |
| Cow position: | chr10:9100670-9100197 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 99 |
| Conread position: | 22-354 |
| Cow position: | chr10:15841525-15841172 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 42, 127 |
| Conread position: | 11-172 |
| Cow position: | chr11:74193181-74193015 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 11-218 |
| Cow position: | chr11:64761741-64761524 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 15-167 |
| Cow position: | chr11:72462547-72462700 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 42, 143 |
| Conread position: | 11-184 |
| Cow position: | chr12:8106760-8106938 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 109 |
| Conread position: | 11-472 |
| Cow position: | chr13:36243183-36242713 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 304 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 53, 203 |
| Conread position: | 11-515 |
| Cow position: | chr13:19596845-19596322 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 328 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 53, 362 |
| Conread position: | 15-454 |
| Cow position: | chr13:19169370-19169813 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 282 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 50, 219 |
| Conread position: | 11-173 |
| Cow position: | chr14:40251480-40251317 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 127 |
| Conread position: | 12-207 |
| Cow position: | chr14:29635186-29635385 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 11-166 |
| Cow position: | chr15:34252099-34252256 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 53, 116 |
| Conread position: | 10-152 |
| Cow position: | chr16:14744964-14744821 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 54, 85 |
| Conread position: | 11-468 |
| Cow position: | chr16:40563725-40564194 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 53, 217 |
| Conread position: | 23-471 |
| Cow position: | chr16:38349451-38348999 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 299 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 42, 252 |
| Conread position: | 11-459 |
| Cow position: | chr17:40224329-40224790 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 300 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 44, 221 |
| Conread position: | 11-468 |
| Cow position: | chr17:25591125-25591594 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 301 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 53, 355 |
| Conread position: | 19-218 |
| Cow position: | chr17:18897652-18897448 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 45, 144 |
| Conread position: | 11-242 |
| Cow position: | chr18:8287488-8287249 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 16-153 |
| Cow position: | chr18:19467965-19467825 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 23-208 |
| Cow position: | chr18:15887564-15887757 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 41, 77 |
| Conread position: | 1-185 |
| Cow position: | chr19:34391522-34391332 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 11-173 |
| Cow position: | chr19:2116668-2116505 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 53, 150 |
| Conread position: | 21-167 |
| Cow position: | chr19:39936546-39936399 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 43, 105 |
| Conread position: | 6-462 |
| Cow position: | chr21:40772775-40773242 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 15-208 |
| Cow position: | chr21:29529810-29529605 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 33-475 |
| Cow position: | chr21:15263450-15263893 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 292 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 31, 188 |
| Conread position: | 11-163 |
| Cow position: | chr22:18288187-18288031 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 53, 111 |
| Conread position: | 12-324 |
| Cow position: | chr22:2083480-2083148 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 52, 107 |
| Conread position: | 15-489 |
| Cow position: | chr23:6689728-6690218 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 308 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 26, 64 |
| Conread position: | 9-301 |
| Cow position: | chr24:19566349-19566655 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 7, 225 |
| Conread position: | 11-159 |
| Cow position: | chr24:854068-853917 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 15-153 |
| Cow position: | chr24:31185741-31185881 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 50, 124 |
| Conread position: | 23-215 |
| Cow position: | chr24:39433176-39432978 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 8-307 |
| Cow position: | chr26:32982589-32982284 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 58, 219 |
| Conread position: | 17-471 |
| Cow position: | chr26:16853305-16852836 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 159 |
| Conread position: | 15-167 |
| Cow position: | chr27:617469-617316 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 15-328 |
| Cow position: | chr27:693862-693545 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 224, 52 |
| Conread position: | 15-483 |
| Cow position: | chr27:5830105-5829622 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 10, 19 |
| Conread position: | 24-491 |
| Cow position: | chr27:25659483-25659016 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 307 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 40, 199 |
| Conread position: | 45-472 |
| Cow position: | chr27:17719350-17719786 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 282 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 19, 88 |
| Conread position: | 11-166 |
| Cow position: | chr28:10611144-10610986 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 132 |
| Conread position: | 15-177 |
| Cow position: | chr28:20543080-20543243 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 150 |
| Conread position: | 24-474 |
| Cow position: | chr28:22535823-22535379 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 295 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 41, 21 |
| Conread position: | 11-156 |
| Cow position: | chr29:20494076-20494224 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 11-509 |
| Cow position: | chr29:1995042-1995564 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 329 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 55, 133 |
| Conread position: | 21-471 |
| Cow position: | chr29:31823467-31823009 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 299 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 58, 117 |
| Conread position: | 11-383 |
| Cow position: | chr5:60640026-60640384 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 270 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 71, 137 |
| Conread position: | 433-744 |
| Cow position: | chr5:60640397-60640729 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 11-461 |
| Cow position: | chr6:16505115-16504659 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 295 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 130 |
| Conread position: | 11-472 |
| Cow position: | chr6:32834777-32834300 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 306 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 73, 220 |
| Conread position: | 11-494 |
| Cow position: | chr7:130064-130560 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 10 |
| Conread position: | 22-215 |
| Cow position: | chr7:43303241-43303435 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 61, 11 |
| Conread position: | 6-355 |
| Cow position: | chr8:38895964-38896323 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 58, 5 |
| Conread position: | 11-472 |
| Cow position: | chr8:21690495-21690967 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 72, 127 |
| Conread position: | 11-472 |
| Cow position: | chr8:25136263-25136735 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 307 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 53, 151 |
| Conread position: | 7-299 |
| Cow position: | chr9:23367428-23367124 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 57, 153 |
| Conread position: | 11-181 |
| Cow position: | chr9:33988052-33987874 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 11-458 |
| Cow position: | chr9:29853789-29854244 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 157 |
| Conread position: | 11-179 |
| Cow position: | chrX:15308184-15308010 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 11-479 |
| Cow position: | chrX:6641280-6640797 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 307 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 53, 220 |
| Conread position: | 12-277 |
| Cow position: | chrX:6025897-6025619 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 52, 94 |
| Conread position: | 15-218 |
| Cow position: | chrX:20805899-20805686 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 21-184 |
| Cow position: | chrX:28855318-28855487 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 24-167 |
| Cow position: | chrX:44724900-44724754 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 40, 0 |