Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8025I13.3 |
| Conread position: | 305-713 |
| Cow position: | chr1:10897436-10897827 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 95, 16 |
| Conread position: | 447-760 |
| Cow position: | chr1:58704255-58704569 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 77, 55 |
| Conread position: | 452-721 |
| Cow position: | chr1:97250435-97250158 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 124, 28 |
| Conread position: | 467-690 |
| Cow position: | chr1:54099268-54099041 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 13, 9 |
| Conread position: | 491-760 |
| Cow position: | chr1:78787255-78786981 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 342-753 |
| Cow position: | chr10:64789352-64789754 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 17, 59 |
| Conread position: | 553-835 |
| Cow position: | chr10:31976010-31975710 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 77 |
| Conread position: | 339-661 |
| Cow position: | chr11:52243463-52243151 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 24, 56 |
| Conread position: | 432-693 |
| Cow position: | chr11:34289389-34289134 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 93, 182 |
| Conread position: | 574-756 |
| Cow position: | chr11:23403353-23403171 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 41, 30 |
| Conread position: | 640-759 |
| Cow position: | chr11:16883662-16883543 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 89, 65 |
| Conread position: | 414-661 |
| Cow position: | chr13:33486495-33486735 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 162, 7 |
| Conread position: | 602-848 |
| Cow position: | chr13:51942258-51942015 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 110 |
| Conread position: | 418-659 |
| Cow position: | chr14:11675952-11675713 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 157, 51 |
| Conread position: | 457-723 |
| Cow position: | chr14:34109667-34109932 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 119, 65 |
| Conread position: | 167-841 |
| Cow position: | chr15:40743320-40742657 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 26 |
| Conread position: | 457-724 |
| Cow position: | chr15:46456224-46456489 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 69, 80 |
| Conread position: | 485-790 |
| Cow position: | chr16:45099038-45099343 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 41, 94 |
| Conread position: | 342-657 |
| Cow position: | chr17:12138822-12139150 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 24, 74 |
| Conread position: | 475-876 |
| Cow position: | chr17:38595046-38595464 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 345-648 |
| Cow position: | chr18:33192508-33192198 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 451-813 |
| Cow position: | chr18:16750601-16750229 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 85, 43 |
| Conread position: | 488-661 |
| Cow position: | chr18:5734556-5734728 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 85, 56 |
| Conread position: | 553-744 |
| Cow position: | chr18:5214043-5213849 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 23, 29 |
| Conread position: | 601-760 |
| Cow position: | chr18:5650321-5650483 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 16, 11 |
| Conread position: | 451-755 |
| Cow position: | chr2:68648350-68648046 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 222 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 86, 18 |
| Conread position: | 457-659 |
| Cow position: | chr2:27168023-27167825 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 85, 17 |
| Conread position: | 463-756 |
| Cow position: | chr2:45503799-45503502 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 131 |
| Conread position: | 497-708 |
| Cow position: | chr2:5696424-5696223 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 79, 28 |
| Conread position: | 459-724 |
| Cow position: | chr20:12713421-12713686 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 63, 158 |
| Conread position: | 467-661 |
| Cow position: | chr20:33709179-33708988 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 109, 162 |
| Conread position: | 468-744 |
| Cow position: | chr20:10059311-10059578 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 8, 18 |
| Conread position: | 553-801 |
| Cow position: | chr20:6959322-6959567 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 44 |
| Conread position: | 339-661 |
| Cow position: | chr21:20155878-20156195 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 31, 62 |
| Conread position: | 342-661 |
| Cow position: | chr21:39094916-39095240 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 116 |
| Conread position: | 474-661 |
| Cow position: | chr21:35083958-35083778 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 102, 49 |
| Conread position: | 485-759 |
| Cow position: | chr21:28685733-28685999 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 41, 126 |
| Conread position: | 487-760 |
| Cow position: | chr21:41294605-41294328 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 39, 90 |
| Conread position: | 556-725 |
| Cow position: | chr21:35052618-35052789 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 20, 101 |
| Conread position: | 427-756 |
| Cow position: | chr22:13973736-13974064 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 90, 172 |
| Conread position: | 451-831 |
| Cow position: | chr22:38732665-38733049 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 539-755 |
| Cow position: | chr22:37562486-37562708 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 37, 11 |
| Conread position: | 601-722 |
| Cow position: | chr22:40799748-40799870 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 457-760 |
| Cow position: | chr23:9048797-9049091 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 70, 116 |
| Conread position: | 439-754 |
| Cow position: | chr24:4399845-4400145 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 93, 115 |
| Conread position: | 473-756 |
| Cow position: | chr24:19051817-19051539 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 52, 116 |
| Conread position: | 342-659 |
| Cow position: | chr25:8906925-8907241 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 73 |
| Conread position: | 465-742 |
| Cow position: | chr25:36485931-36485662 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 14, 97 |
| Conread position: | 553-761 |
| Cow position: | chr25:22522321-22522109 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 463-848 |
| Cow position: | chr26:8626751-8627140 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 123 |
| Conread position: | 533-760 |
| Cow position: | chr26:17682453-17682227 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 43, 68 |
| Conread position: | 460-804 |
| Cow position: | chr27:11947556-11947195 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 246 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 423-661 |
| Cow position: | chr28:10567211-10566974 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 153, 187 |
| Conread position: | 495-669 |
| Cow position: | chr28:19430800-19430975 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 458-754 |
| Cow position: | chr29:27039039-27039330 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 132, 48 |
| Conread position: | 340-663 |
| Cow position: | chr3:74217669-74217337 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 28, 137 |
| Conread position: | 450-755 |
| Cow position: | chr3:72549070-72549364 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 75, 98 |
| Conread position: | 457-811 |
| Cow position: | chr3:44808628-44808975 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 119, 60 |
| Conread position: | 475-831 |
| Cow position: | chr4:18507779-18507399 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 37, 98 |
| Conread position: | 342-652 |
| Cow position: | chr5:36379635-36379946 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 24, 47 |
| Conread position: | 416-659 |
| Cow position: | chr5:52844623-52844383 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 10, 71 |
| Conread position: | 430-849 |
| Cow position: | chr5:22897429-22897850 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 280 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 12, 66 |
| Conread position: | 477-837 |
| Cow position: | chr5:18827633-18827991 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 48, 117 |
| Conread position: | 566-760 |
| Cow position: | chr5:21590864-21591054 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 10, 37 |
| Conread position: | 544-759 |
| Cow position: | chr6:47910930-47910719 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 16 |
| Conread position: | 429-661 |
| Cow position: | chr7:19894979-19895209 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 147, 40 |
| Conread position: | 431-725 |
| Cow position: | chr7:38239141-38238846 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 184, 145 |
| Conread position: | 447-584 |
| Cow position: | chr7:41968576-41968715 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 598-760 |
| Cow position: | chr7:3276488-3276331 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 342-759 |
| Cow position: | chr8:41932271-41932690 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 281 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 10, 109 |
| Conread position: | 342-770 |
| Cow position: | chr8:48764092-48764520 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 288 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 20, 60 |
| Conread position: | 430-723 |
| Cow position: | chr8:11635970-11635672 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 96, 238 |
| Conread position: | 457-649 |
| Cow position: | chr8:41209045-41208847 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 68, 88 |
| Conread position: | 575-760 |
| Cow position: | chr8:58503877-58503690 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 51, 27 |
| Conread position: | 342-661 |
| Cow position: | chr9:18564560-18564243 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 430-726 |
| Cow position: | chr9:10942905-10943206 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 46, 72 |
| Conread position: | 510-717 |
| Cow position: | chr9:43727947-43728151 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 66, 34 |
| Conread position: | 339-725 |
| Cow position: | chrX:27524475-27524848 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 21, 63 |
| Conread position: | 368-755 |
| Cow position: | chrX:26127613-26127994 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 173, 23 |
| Conread position: | 415-661 |
| Cow position: | chrX:26194667-26194432 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 13, 56 |
| Conread position: | 464-724 |
| Cow position: | chrX:27620718-27620454 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 61, 161 |
| Conread position: | 497-759 |
| Cow position: | chrX:3804017-3804273 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 80, 52 |