Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8028L16.5 |
| Conread position: | 21-1292 |
| Cow position: | chr1:32209853-32211133 (view UCSC Genome Browser custom track) |
| Alignm length: | 1302 |
| Alignm identity: | 1018 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 43 |
| Conread position: | 713-882 |
| Cow position: | chr1:87550752-87550585 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 33, 38 |
| Conread position: | 752-912 |
| Cow position: | chr1:73499358-73499517 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 83, 27 |
| Conread position: | 716-917 |
| Cow position: | chr10:37719889-37720092 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 719-911 |
| Cow position: | chr10:48337973-48338166 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 24, 43 |
| Conread position: | 720-911 |
| Cow position: | chr11:15208034-15208225 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 60 |
| Conread position: | 722-888 |
| Cow position: | chr11:21004844-21005010 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 24, 39 |
| Conread position: | 724-883 |
| Cow position: | chr11:68149930-68149773 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 57 |
| Conread position: | 707-888 |
| Cow position: | chr13:38886293-38886473 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 72 |
| Conread position: | 724-911 |
| Cow position: | chr13:55543678-55543864 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 724-925 |
| Cow position: | chr13:34397562-34397762 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 729-903 |
| Cow position: | chr13:35549731-35549559 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 724-885 |
| Cow position: | chr14:7059094-7059258 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 142, 54 |
| Conread position: | 720-889 |
| Cow position: | chr15:5694857-5694693 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 725-916 |
| Cow position: | chr15:20084430-20084624 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 727-874 |
| Cow position: | chr15:48261871-48262018 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 706-911 |
| Cow position: | chr16:22874145-22874346 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 41, 21 |
| Conread position: | 720-911 |
| Cow position: | chr16:42601617-42601809 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 23, 61 |
| Conread position: | 721-877 |
| Cow position: | chr16:2896535-2896376 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 25, 59 |
| Conread position: | 723-883 |
| Cow position: | chr16:48508936-48508779 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 724-911 |
| Cow position: | chr16:11033494-11033308 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 86, 15 |
| Conread position: | 720-926 |
| Cow position: | chr18:20608271-20608067 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 41 |
| Conread position: | 725-904 |
| Cow position: | chr18:48405391-48405212 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 727-917 |
| Cow position: | chr18:30764984-30765167 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 726-885 |
| Cow position: | chr19:2451316-2451474 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 35 |
| Conread position: | 720-885 |
| Cow position: | chr2:81865208-81865376 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 26, 60 |
| Conread position: | 722-904 |
| Cow position: | chr2:38633293-38633474 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 39 |
| Conread position: | 724-879 |
| Cow position: | chr2:84237359-84237515 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 73 |
| Conread position: | 729-913 |
| Cow position: | chr2:57569494-57569310 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 724-916 |
| Cow position: | chr20:1519619-1519429 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 56 |
| Conread position: | 723-918 |
| Cow position: | chr22:10711009-10711204 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 28, 22 |
| Conread position: | 724-880 |
| Cow position: | chr23:29961811-29961655 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 728-932 |
| Cow position: | chr23:12048839-12049041 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 721-885 |
| Cow position: | chr25:12499913-12499752 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 721-918 |
| Cow position: | chr25:14156287-14156482 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 59 |
| Conread position: | 727-921 |
| Cow position: | chr25:28172931-28173127 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 19, 53 |
| Conread position: | 726-917 |
| Cow position: | chr29:11317351-11317159 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 53 |
| Conread position: | 724-913 |
| Cow position: | chr3:19701397-19701578 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 21 |
| Conread position: | 720-933 |
| Cow position: | chr4:20892102-20891890 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 47, 40 |
| Conread position: | 724-922 |
| Cow position: | chr4:36870215-36870014 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 50, 193 |
| Conread position: | 725-914 |
| Cow position: | chr4:49652486-49652671 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 699-913 |
| Cow position: | chr5:70294215-70294430 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 714-912 |
| Cow position: | chr5:50099001-50098797 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 718-904 |
| Cow position: | chr5:39710904-39711087 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 28, 62 |
| Conread position: | 725-912 |
| Cow position: | chr5:40640998-40641183 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 60 |
| Conread position: | 745-916 |
| Cow position: | chr5:34564585-34564753 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 55, 34 |
| Conread position: | 722-924 |
| Cow position: | chr6:54981423-54981624 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 113, 57 |
| Conread position: | 723-873 |
| Cow position: | chr7:34135602-34135751 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 57 |
| Conread position: | 724-888 |
| Cow position: | chr7:42457793-42457954 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 724-889 |
| Cow position: | chr7:23774307-23774141 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 23, 56 |
| Conread position: | 728-922 |
| Cow position: | chr7:29411272-29411465 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 52 |
| Conread position: | 707-921 |
| Cow position: | chr8:7734372-7734581 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 130, 35 |
| Conread position: | 720-920 |
| Cow position: | chr8:34973856-34973654 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 26, 41 |
| Conread position: | 722-904 |
| Cow position: | chr8:13740031-13739850 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 26, 40 |
| Conread position: | 724-911 |
| Cow position: | chr8:18354116-18353932 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 21, 37 |
| Conread position: | 726-887 |
| Cow position: | chr8:16668080-16668239 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 53 |
| Conread position: | 726-935 |
| Cow position: | chr8:29461250-29461457 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 20, 32 |
| Conread position: | 717-908 |
| Cow position: | chr9:50762754-50762565 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 31, 21 |
| Conread position: | 712-885 |
| Cow position: | chrX:19143547-19143377 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 724-908 |
| Cow position: | chrX:35476979-35477165 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 22, 108 |
| Conread position: | 726-885 |
| Cow position: | chrX:18885992-18885838 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 729-887 |
| Cow position: | chrX:31288556-31288398 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 34 |