Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8030H10.5 |
| Conread position: | 333-606 |
| Cow position: | chr1:31271661-31271938 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 82, 52 |
| Conread position: | 338-601 |
| Cow position: | chr1:42080577-42080308 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 56 |
| Conread position: | 333-601 |
| Cow position: | chr10:7501388-7501113 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 82, 108 |
| Conread position: | 333-603 |
| Cow position: | chr10:24098975-24099244 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 83, 52 |
| Conread position: | 333-619 |
| Cow position: | chr10:47963143-47963436 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 90, 58 |
| Conread position: | 335-580 |
| Cow position: | chr10:49141040-49140800 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 38, 34 |
| Conread position: | 336-601 |
| Cow position: | chr10:51724359-51724624 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 122, 26 |
| Conread position: | 344-607 |
| Cow position: | chr10:44721137-44720880 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 49-257 |
| Cow position: | chr11:9241063-9241271 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 153, 173 |
| Conread position: | 333-605 |
| Cow position: | chr11:9241205-9241475 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 57 |
| Conread position: | 334-589 |
| Cow position: | chr11:54316913-54316655 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 32, 45 |
| Conread position: | 334-606 |
| Cow position: | chr11:56106309-56106577 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 50 |
| Conread position: | 336-601 |
| Cow position: | chr11:40492275-40492009 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 80, 15 |
| Conread position: | 336-597 |
| Cow position: | chr12:27781860-27781594 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 337-606 |
| Cow position: | chr12:48468894-48468618 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 68, 100 |
| Conread position: | 440-602 |
| Cow position: | chr12:11689237-11689397 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 143, 43 |
| Conread position: | 333-601 |
| Cow position: | chr13:12877192-12877474 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 82, 43 |
| Conread position: | 333-605 |
| Cow position: | chr13:47687484-47687221 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 83, 28 |
| Conread position: | 335-606 |
| Cow position: | chr13:22568776-22569054 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 49 |
| Conread position: | 337-606 |
| Cow position: | chr13:2832910-2833189 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 142 |
| Conread position: | 333-601 |
| Cow position: | chr14:24479325-24479607 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 52 |
| Conread position: | 334-606 |
| Cow position: | chr14:41511924-41511647 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 57, 104 |
| Conread position: | 335-601 |
| Cow position: | chr16:4796865-4797149 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 80, 50 |
| Conread position: | 333-601 |
| Cow position: | chr17:29695663-29695940 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 39, 61 |
| Conread position: | 422-605 |
| Cow position: | chr17:5390130-5389947 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 112 |
| Conread position: | 333-575 |
| Cow position: | chr18:18381686-18381931 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 83, 33 |
| Conread position: | 333-604 |
| Cow position: | chr18:42362949-42362678 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 52, 95 |
| Conread position: | 334-601 |
| Cow position: | chr18:31383221-31382939 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 81, 58 |
| Conread position: | 333-605 |
| Cow position: | chr19:17732862-17732585 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 79, 58 |
| Conread position: | 334-607 |
| Cow position: | chr19:4424838-4424559 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 66, 51 |
| Conread position: | 335-601 |
| Cow position: | chr19:38439962-38439686 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 123 |
| Conread position: | 318-601 |
| Cow position: | chr2:32928590-32928879 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 20, 180 |
| Conread position: | 332-601 |
| Cow position: | chr2:76812613-76812345 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 81, 6 |
| Conread position: | 333-579 |
| Cow position: | chr2:11013805-11013562 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 21 |
| Conread position: | 333-580 |
| Cow position: | chr2:44439382-44439627 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 58 |
| Conread position: | 333-580 |
| Cow position: | chr2:52627891-52628145 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 52, 122 |
| Conread position: | 333-605 |
| Cow position: | chr2:7427722-7427993 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 82, 51 |
| Conread position: | 338-603 |
| Cow position: | chr2:41050117-41050391 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 77, 176 |
| Conread position: | 421-601 |
| Cow position: | chr2:72087262-72087441 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 162, 25 |
| Conread position: | 437-606 |
| Cow position: | chr2:72244463-72244627 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 146, 11 |
| Conread position: | 334-580 |
| Cow position: | chr21:14509107-14508861 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 81, 51 |
| Conread position: | 335-606 |
| Cow position: | chr21:5053358-5053633 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 50, 151 |
| Conread position: | 336-580 |
| Cow position: | chr21:34337615-34337372 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 81, 55 |
| Conread position: | 337-606 |
| Cow position: | chr21:29653887-29653606 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 333-564 |
| Cow position: | chr22:42487830-42488065 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 82, 43 |
| Conread position: | 340-606 |
| Cow position: | chr22:13643424-13643691 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 76, 41 |
| Conread position: | 345-580 |
| Cow position: | chr22:39923832-39923595 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 47 |
| Conread position: | 345-602 |
| Cow position: | chr22:22309050-22308787 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 40 |
| Conread position: | 335-580 |
| Cow position: | chr23:12196385-12196635 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 76, 63 |
| Conread position: | 422-607 |
| Cow position: | chr23:9261276-9261458 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 318-571 |
| Cow position: | chr24:2449393-2449647 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 97, 22 |
| Conread position: | 333-601 |
| Cow position: | chr24:16536863-16537133 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 72, 52 |
| Conread position: | 336-590 |
| Cow position: | chr24:19711822-19711564 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 110, 47 |
| Conread position: | 335-600 |
| Cow position: | chr25:25604573-25604829 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 46, 41 |
| Conread position: | 336-590 |
| Cow position: | chr26:6672210-6672457 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 106, 34 |
| Conread position: | 342-588 |
| Cow position: | chr26:16975081-16974830 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 74, 49 |
| Conread position: | 333-601 |
| Cow position: | chr27:14426313-14426584 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 83, 51 |
| Conread position: | 333-586 |
| Cow position: | chr28:24542733-24542483 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 82, 52 |
| Conread position: | 333-604 |
| Cow position: | chr28:617214-616939 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 82, 57 |
| Conread position: | 333-590 |
| Cow position: | chr3:73407819-73407551 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 52 |
| Conread position: | 341-601 |
| Cow position: | chr3:41854581-41854837 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 41, 29 |
| Conread position: | 333-602 |
| Cow position: | chr4:55127126-55126853 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 80, 52 |
| Conread position: | 346-603 |
| Cow position: | chr4:65341921-65342191 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 71, 14 |
| Conread position: | 335-561 |
| Cow position: | chr5:24345273-24345498 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 79, 41 |
| Conread position: | 336-581 |
| Cow position: | chr5:67624044-67623801 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 63, 49 |
| Conread position: | 337-571 |
| Cow position: | chr5:54329235-54329004 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 39 |
| Conread position: | 340-614 |
| Cow position: | chr5:48248143-48247866 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 62, 45 |
| Conread position: | 59-204 |
| Cow position: | chr6:51935312-51935168 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 333-581 |
| Cow position: | chr6:32446117-32446371 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 21, 38 |
| Conread position: | 336-601 |
| Cow position: | chr7:13497648-13497916 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 79, 48 |
| Conread position: | 333-601 |
| Cow position: | chr8:39363084-39362815 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 43, 52 |
| Conread position: | 333-601 |
| Cow position: | chr8:40272533-40272811 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 193 |
| Conread position: | 333-601 |
| Cow position: | chr8:54518951-54518679 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 38, 58 |
| Conread position: | 332-601 |
| Cow position: | chrX:27073683-27073416 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 73, 6 |
| Conread position: | 333-570 |
| Cow position: | chrX:20834505-20834749 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 80, 13 |
| Conread position: | 333-579 |
| Cow position: | chrX:4502436-4502178 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 82, 51 |
| Conread position: | 333-579 |
| Cow position: | chrX:35820380-35820638 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 42, 178 |
| Conread position: | 333-593 |
| Cow position: | chrX:7316882-7316618 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 82, 52 |
| Conread position: | 333-598 |
| Cow position: | chrX:37942843-37943107 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 31, 50 |
| Conread position: | 333-600 |
| Cow position: | chrX:11114627-11114894 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 82, 89 |
| Conread position: | 335-601 |
| Cow position: | chrX:25039495-25039221 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 44, 35 |
| Conread position: | 336-571 |
| Cow position: | chrX:17901611-17901854 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 56, 34 |