Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8030O19.5 |
| Conread position: | 157-338 |
| Cow position: | chr11:84483707-84483888 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 86, 77 |
| Conread position: | 16-514 |
| Cow position: | chr14:433901-434393 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 319 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 150, 44 |
| Conread position: | 110-598 |
| Cow position: | chr14:3061229-3060738 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 304 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 27, 65 |
| Conread position: | 145-564 |
| Cow position: | chr14:680515-680940 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 206 |
| Conread position: | 145-588 |
| Cow position: | chr14:3061617-3061168 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 18, 261 |
| Conread position: | 157-590 |
| Cow position: | chr14:433865-434301 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 267 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 92, 73 |
| Conread position: | 158-590 |
| Cow position: | chr14:3061349-3060914 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 262 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 202, 407 |
| Conread position: | 167-476 |
| Cow position: | chr14:3061004-3060692 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 190, 229 |
| Conread position: | 167-598 |
| Cow position: | chr14:25895263-25895697 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 263 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 76, 66 |
| Conread position: | 179-476 |
| Cow position: | chr14:3061496-3061196 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 143, 138 |
| Conread position: | 2-888 |
| Cow position: | chr15:48468681-48469552 (view UCSC Genome Browser custom track) |
| Alignm length: | 890 |
| Alignm identity: | 767 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 874, 670 |
| Conread position: | 1-476 |
| Cow position: | chr17:44467684-44468153 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 295 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 239, 61 |
| Conread position: | 16-557 |
| Cow position: | chr17:41440780-41440245 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 334 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 319, 80 |
| Conread position: | 16-598 |
| Cow position: | chr17:41440948-41440372 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 351 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 65, 61 |
| Conread position: | 145-590 |
| Cow position: | chr17:41441083-41440632 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 281 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 13, 348 |
| Conread position: | 157-693 |
| Cow position: | chr17:44467495-44468036 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 346 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 155, 170 |
| Conread position: | 179-476 |
| Cow position: | chr17:44467937-44468237 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 72, 67 |
| Conread position: | 182-598 |
| Cow position: | chr17:41440877-41440456 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 270 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 5, 223 |
| Conread position: | 14-503 |
| Cow position: | chr18:56391341-56390858 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 308 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 130, 51 |
| Conread position: | 102-598 |
| Cow position: | chr18:56391597-56391099 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 319 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 69, 13 |
| Conread position: | 118-598 |
| Cow position: | chr18:56391498-56391015 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 304 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 25, 42 |
| Conread position: | 145-629 |
| Cow position: | chr18:55497581-55497090 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 26, 175 |
| Conread position: | 159-566 |
| Cow position: | chr18:44817883-44818295 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 256 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 191, 246 |
| Conread position: | 167-629 |
| Cow position: | chr18:22844303-22843834 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 67, 74 |
| Conread position: | 190-620 |
| Cow position: | chr18:47846596-47846164 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 266 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 38, 52 |
| Conread position: | 16-590 |
| Cow position: | chr21:12659090-12659658 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 335 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 344, 36 |
| Conread position: | 166-563 |
| Cow position: | chr21:12659063-12659463 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 245 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 164, 170 |
| Conread position: | 167-598 |
| Cow position: | chr21:12659148-12659582 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 262 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 167, 150 |
| Conread position: | 179-560 |
| Cow position: | chr21:12659580-12659964 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 181, 228 |
| Conread position: | 179-563 |
| Cow position: | chr21:12658992-12659379 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 157, 137 |
| Conread position: | 187-560 |
| Cow position: | chr21:12659504-12659880 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 144, 161 |
| Conread position: | 110-463 |
| Cow position: | chr25:4657375-4657018 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 58, 41 |
| Conread position: | 110-598 |
| Cow position: | chr25:25652698-25653189 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 60, 33 |
| Conread position: | 110-598 |
| Cow position: | chr25:33530235-33530726 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 44, 59 |
| Conread position: | 117-598 |
| Cow position: | chr25:25652285-25652769 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 303 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 41, 33 |
| Conread position: | 119-598 |
| Cow position: | chr25:25652623-25653105 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 294 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 193, 227 |
| Conread position: | 149-468 |
| Cow position: | chr25:24385122-24384797 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 10, 86 |
| Conread position: | 157-549 |
| Cow position: | chr25:3636509-3636114 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 199, 254 |
| Conread position: | 157-587 |
| Cow position: | chr25:24385195-24384762 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 94, 86 |
| Conread position: | 157-613 |
| Cow position: | chr25:34473644-34474102 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 96, 88 |
| Conread position: | 158-474 |
| Cow position: | chr25:22941323-22941004 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 105, 100 |
| Conread position: | 160-521 |
| Cow position: | chr25:33530456-33530817 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 90, 11 |
| Conread position: | 164-566 |
| Cow position: | chr25:33529074-33529479 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 168, 184 |
| Conread position: | 164-598 |
| Cow position: | chr25:33530121-33530558 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 77, 69 |
| Conread position: | 177-621 |
| Cow position: | chr25:3664088-3664538 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 39, 48 |
| Conread position: | 178-599 |
| Cow position: | chr25:25652598-25653022 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 256 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 182, 0 |
| Conread position: | 188-598 |
| Cow position: | chr25:25652188-25652601 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 172, 219 |
| Conread position: | 190-625 |
| Cow position: | chr25:4657463-4657025 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 287-627 |
| Cow position: | chr25:4657450-4657104 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 43, 50 |
| Conread position: | 158-590 |
| Cow position: | chr28:34696134-34696569 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 202, 253 |
| Conread position: | 154-353 |
| Cow position: | chr3:20194496-20194695 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 158, 168 |
| Conread position: | 157-598 |
| Cow position: | chr3:20194775-20195219 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 278 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 93, 89 |
| Conread position: | 15-557 |
| Cow position: | chr4:65350049-65350582 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 329 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 285, 75 |
| Conread position: | 52-566 |
| Cow position: | chr4:65349822-65350342 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 322 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 26, 20 |
| Conread position: | 96-590 |
| Cow position: | chr4:65261646-65261147 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 297 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 12, 317 |
| Conread position: | 109-592 |
| Cow position: | chr4:65703578-65703093 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 303 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 37, 48 |
| Conread position: | 117-540 |
| Cow position: | chr4:65121546-65121972 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 134, 129 |
| Conread position: | 132-560 |
| Cow position: | chr4:65350324-65350753 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 277 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 14, 160 |
| Conread position: | 147-589 |
| Cow position: | chr4:65703624-65703179 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 212, 337 |
| Conread position: | 153-591 |
| Cow position: | chr4:65350010-65350451 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 266 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 183, 178 |
| Conread position: | 187-540 |
| Cow position: | chr4:65703668-65703312 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 113, 121 |
| Conread position: | 145-564 |
| Cow position: | chr6:49428266-49428691 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 14, 99 |
| Conread position: | 157-590 |
| Cow position: | chr6:49428533-49428969 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 170, 161 |
| Conread position: | 163-563 |
| Cow position: | chr6:49428791-49429194 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 171, 148 |
| Conread position: | 8-609 |
| Cow position: | chr7:12293429-12294024 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 370 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 135, 82 |
| Conread position: | 93-619 |
| Cow position: | chr7:12293254-12293782 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 328 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 77, 22 |