Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8031E09.3 |
| Conread position: | 103-316 |
| Cow position: | chr10:17787441-17787220 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 16, 50 |
| Conread position: | 116-312 |
| Cow position: | chr10:69231944-69231748 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 118-312 |
| Cow position: | chr10:29853110-29852914 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 64, 19 |
| Conread position: | 118-332 |
| Cow position: | chr10:34539620-34539840 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 56, 26 |
| Conread position: | 119-336 |
| Cow position: | chr10:21003574-21003356 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 122, 34 |
| Conread position: | 82-325 |
| Cow position: | chr11:57584868-57585117 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 37, 66 |
| Conread position: | 94-265 |
| Cow position: | chr11:17090838-17091012 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 83, 32 |
| Conread position: | 104-312 |
| Cow position: | chr11:26131668-26131454 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 104-318 |
| Cow position: | chr11:46112692-46112910 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 105-318 |
| Cow position: | chr11:25170701-25170487 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 51 |
| Conread position: | 118-320 |
| Cow position: | chr11:75571540-75571741 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 127, 15 |
| Conread position: | 120-308 |
| Cow position: | chr11:50546293-50546113 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 51, 32 |
| Conread position: | 103-263 |
| Cow position: | chr12:22843541-22843377 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 49 |
| Conread position: | 109-317 |
| Cow position: | chr12:10613303-10613093 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 73, 17 |
| Conread position: | 104-312 |
| Cow position: | chr13:59643961-59644175 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 103-317 |
| Cow position: | chr14:28136541-28136324 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 37 |
| Conread position: | 117-325 |
| Cow position: | chr14:39449276-39449064 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 100-320 |
| Cow position: | chr15:17248431-17248654 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 50 |
| Conread position: | 115-317 |
| Cow position: | chr15:23416353-23416152 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 64, 38 |
| Conread position: | 92-265 |
| Cow position: | chr16:15517967-15517790 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 104-278 |
| Cow position: | chr16:37391658-37391838 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 113-317 |
| Cow position: | chr16:28048325-28048117 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 64, 41 |
| Conread position: | 104-265 |
| Cow position: | chr17:19150158-19150325 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 15, 49 |
| Conread position: | 117-335 |
| Cow position: | chr17:10425777-10425554 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 60, 26 |
| Conread position: | 104-335 |
| Cow position: | chr18:18647491-18647730 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 15, 49 |
| Conread position: | 104-304 |
| Cow position: | chr19:8697647-8697441 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 14, 41 |
| Conread position: | 105-321 |
| Cow position: | chr19:44117-44338 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 94, 43 |
| Conread position: | 106-330 |
| Cow position: | chr19:7119292-7119066 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 108, 46 |
| Conread position: | 109-317 |
| Cow position: | chr19:13579720-13579506 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 8, 45 |
| Conread position: | 96-312 |
| Cow position: | chr2:46311565-46311347 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 9 |
| Conread position: | 109-306 |
| Cow position: | chr2:43813861-43814063 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 11, 45 |
| Conread position: | 113-317 |
| Cow position: | chr2:81010081-81010289 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 128, 191 |
| Conread position: | 104-312 |
| Cow position: | chr20:7548541-7548332 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 44 |
| Conread position: | 120-311 |
| Cow position: | chr20:33769815-33770017 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 90-317 |
| Cow position: | chr21:34601316-34601081 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 11, 88 |
| Conread position: | 115-322 |
| Cow position: | chr21:2402676-2402466 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 60, 38 |
| Conread position: | 149-303 |
| Cow position: | chr21:21075791-21075635 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 97 |
| Conread position: | 93-317 |
| Cow position: | chr22:29796285-29796055 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 87, 10 |
| Conread position: | 103-331 |
| Cow position: | chr22:28309599-28309374 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 17, 41 |
| Conread position: | 104-318 |
| Cow position: | chr23:40092575-40092360 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 119-317 |
| Cow position: | chr23:16920452-16920654 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 118-318 |
| Cow position: | chr24:28061663-28061461 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 64, 38 |
| Conread position: | 62-312 |
| Cow position: | chr25:7589168-7588917 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 28, 96 |
| Conread position: | 115-295 |
| Cow position: | chr26:7901312-7901492 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 56, 38 |
| Conread position: | 1-321 |
| Cow position: | chr28:22252645-22252967 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 146 |
| Conread position: | 112-325 |
| Cow position: | chr28:3481113-3480897 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 68, 41 |
| Conread position: | 115-316 |
| Cow position: | chr28:30618004-30618200 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 139, 37 |
| Conread position: | 149-320 |
| Cow position: | chr28:14174342-14174523 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 444-815 |
| Cow position: | chr28:22253186-22253528 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 11 |
| Conread position: | 71-268 |
| Cow position: | chr29:5951900-5952094 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 97, 21 |
| Conread position: | 113-334 |
| Cow position: | chr29:18064384-18064156 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 40 |
| Conread position: | 101-312 |
| Cow position: | chr3:36465059-36465270 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 19, 44 |
| Conread position: | 103-317 |
| Cow position: | chr3:11780331-11780117 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 74, 19 |
| Conread position: | 105-332 |
| Cow position: | chr3:42751110-42750877 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 15, 40 |
| Conread position: | 109-317 |
| Cow position: | chr3:77212327-77212112 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 66, 9 |
| Conread position: | 118-311 |
| Cow position: | chr4:23499589-23499393 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 122, 29 |
| Conread position: | 84-265 |
| Cow position: | chr5:31059833-31060019 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 104-314 |
| Cow position: | chr5:51845550-51845340 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 17, 49 |
| Conread position: | 104-309 |
| Cow position: | chr6:52271869-52272076 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 20, 45 |
| Conread position: | 104-329 |
| Cow position: | chr6:9344215-9344443 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 140, 48 |
| Conread position: | 123-317 |
| Cow position: | chr6:30715824-30715625 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 56, 17 |
| Conread position: | 83-317 |
| Cow position: | chr7:12658001-12657760 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 98-285 |
| Cow position: | chr7:15368886-15368695 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 80, 55 |
| Conread position: | 105-322 |
| Cow position: | chr7:51926535-51926316 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 121-326 |
| Cow position: | chr7:68110725-68110936 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 58, 31 |
| Conread position: | 100-333 |
| Cow position: | chr8:32643660-32643423 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 6, 54 |
| Conread position: | 104-265 |
| Cow position: | chr8:33838993-33838826 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 49 |
| Conread position: | 120-340 |
| Cow position: | chr8:24391849-24391627 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 59, 24 |
| Conread position: | 96-316 |
| Cow position: | chr9:14041524-14041749 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 33, 46 |
| Conread position: | 105-315 |
| Cow position: | chr9:57168016-57167810 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 39 |
| Conread position: | 120-346 |
| Cow position: | chr9:35737902-35737671 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 62, 13 |